View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_24 (Length: 288)
Name: NF12578_low_24
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_24 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 33410339 - 33410601
Alignment:
| Q |
14 |
agatgaaaacacagagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
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|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
|
| Q |
114 |
cagtgatcagcaacaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33410538 |
T |
|
| Q |
214 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttga |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
33410539 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttga |
33410601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 33424241 - 33424503
Alignment:
| Q |
14 |
agatgaaaacacagagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
|
| Q |
114 |
cagtgatcagcaacaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33424440 |
T |
|
| Q |
214 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttga |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
33424441 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttga |
33424503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 33416188 - 33416450
Alignment:
| Q |
14 |
agatgaaaacacagagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
113 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
|
| Q |
114 |
cagtgatcagcaacaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
213 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
33416387 |
T |
|
| Q |
214 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttga |
276 |
Q |
| |
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||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
33416388 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttga |
33416450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 33428351 - 33428086
Alignment:
| Q |
11 |
cacagatgaaaacacagagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcc |
110 |
Q |
| |
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||||||||||| ||||| || |||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| |||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
|
| Q |
111 |
gaacagtgatcagcaacaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaa |
210 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||| || |||| || ||||| |||| ||||||||||| |||||||||||||| |||| |||||||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaa |
33428152 |
T |
|
| Q |
211 |
aagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttga |
276 |
Q |
| |
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||||||| || ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
33428151 |
aagtgcatctctgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttga |
33428086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 33436405 - 33436626
Alignment:
| Q |
26 |
agagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagca |
125 |
Q |
| |
|
|||||| |||| |||||| || ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||| ||||| |||||||| |
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| T |
33436405 |
agagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaacaatgatcagct |
33436504 |
T |
|
| Q |
126 |
acaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaa |
225 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | || |
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| T |
33436505 |
acgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgcagtccttaa |
33436604 |
T |
|
| Q |
226 |
agagtgtgccatttactttgaa |
247 |
Q |
| |
|
| ||||| ||||| |||||||| |
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| T |
33436605 |
aaagtgtaccattcactttgaa |
33436626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 5372 - 5180
Alignment:
| Q |
26 |
agagtgggcatcagaagaaggtggaggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagca |
125 |
Q |
| |
|
|||||| |||| |||||| || |||| |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||| ||||| |||||||| |
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|
| T |
5372 |
agagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaacaatgatcagct |
5273 |
T |
|
| Q |
126 |
acaccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcag |
218 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272 |
acgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcag |
5180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 24985253 - 24985049
Alignment:
| Q |
53 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagcaacaccacaaacataccactttcttcct |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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|
| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
|
| Q |
153 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacat |
252 |
Q |
| |
|
|| ||||| |||||||| | |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24985054 |
T |
|
| Q |
253 |
tgtgc |
257 |
Q |
| |
|
||||| |
|
|
| T |
24985053 |
tgtgc |
24985049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 24991083 - 24990879
Alignment:
| Q |
53 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcagcaacaccacaaacataccactttcttcct |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||| | || |||| || ||||| |||||||||||||||||| |
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| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
|
| Q |
153 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacat |
252 |
Q |
| |
|
|| ||||| |||||||| | |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24990884 |
T |
|
| Q |
253 |
tgtgc |
257 |
Q |
| |
|
||||| |
|
|
| T |
24990883 |
tgtgc |
24990879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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