View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_29 (Length: 247)
Name: NF12578_low_29
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 35573956 - 35574173
Alignment:
| Q |
22 |
acacactcatccaatggctgatcgtgttcaccctaaatcctctccaccttccaagtccaacaccgctccatcatcgtcaccgccgccgtccggaacctat |
121 |
Q |
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| T |
35573956 |
acacactcatccaatggctgatcgtgttcaccctaaatcctctccaccttccaagtccaacaccgttccatcatcgtcaccgccgccgtccggaacctat |
35574055 |
T |
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| Q |
122 |
gtcatccagctccccaaggatcaaacctaccgcatccctccaccagaaaatgcacaacgttacgccaactacactcgccgcaaaagtcgccggtgcggat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574056 |
gtcatccagctccccaaggatcaaacctaccgcatccctccaccagagaatgcacaacgttacgccaactacactcgccgcaaaagtcgccggtgcggat |
35574155 |
T |
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| Q |
222 |
gctgttgctgtctgtgct |
239 |
Q |
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||||||||||||| |||| |
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| T |
35574156 |
gctgttgctgtctttgct |
35574173 |
T |
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