View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_3 (Length: 523)
Name: NF12578_low_3
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 38226893 - 38226396
Alignment:
| Q |
16 |
aagtgttggcatccatgcttcatagtttaatttatctatcaagaatactaaaacaacataaaattgcgaaaattga--------tcggtgttaacctgca |
107 |
Q |
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| T |
38226893 |
aagtgttggcatccatgcttcatagtttaatttatctatcaagaatactaaaacaacataaaattgcgaaaattgaaaaattgattggttttaacctgca |
38226794 |
T |
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| Q |
108 |
acctcgagtacaagtatcaccaagaatcataatagtagcggtagcggtacccgtttcaccaccagaccaacactctcccatattagggcacttcgcctcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226793 |
acctcgagtacaagtatcaccaagaatcataatagtagcggtagcggtacccgtttcaccaccagaccaacactctcccatattagggcacttcgcctcc |
38226694 |
T |
|
| Q |
208 |
tcacaaaccgtatgaagcttcaattctctcagtttcttcttaatctgcacatacttccaaccaccaggaatcgattccttcatccatttcggtttcggaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226693 |
tcacaaaccgtatgaagcttcaattctctcagtttcttcttaatctgcacatacttccaaccaccaggaatcgattccttcatccatttcggtttcggaa |
38226594 |
T |
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| Q |
308 |
gcggattcttcttcgttcccacttcaacagagtacgcgttgttcgatttcaaggaaatgaagtctgatagggatggggattcccttgcaagacgagctcg |
407 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226593 |
gcggattcttcttcgttccaacttcaacagagtatgcgttgttcgatttcaaggaaatgaagtctgatagggatggggattcccttgcaagacgagctcg |
38226494 |
T |
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| Q |
408 |
gagttcggtcagattctgtggaaattcggaggatgatacggtggttgttgtggtggcggtggtgaaagagaagggttttgtggtggatttgaggtttt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226493 |
gagttcggtcagattctgtggaaattcggaggatgatacggtggttgttgtggtggcggtggtgaaagagaagggttttgtggtggatttgaggtttt |
38226396 |
T |
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