View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_low_33 (Length: 229)

Name: NF12578_low_33
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_low_33
NF12578_low_33
[»] chr7 (32 HSPs)
chr7 (64-214)||(28032896-28033048)
chr7 (13-53)||(2103076-2103116)
chr7 (13-53)||(7176002-7176042)
chr7 (13-53)||(7275298-7275338)
chr7 (13-53)||(7799972-7800012)
chr7 (13-53)||(10091209-10091249)
chr7 (13-53)||(17212074-17212114)
chr7 (13-53)||(21217973-21218013)
chr7 (13-53)||(22119909-22119949)
chr7 (13-53)||(22299870-22299910)
chr7 (13-53)||(22703507-22703547)
chr7 (13-53)||(23854417-23854457)
chr7 (13-53)||(40543050-40543090)
chr7 (15-53)||(18044128-18044166)
chr7 (13-53)||(2751292-2751332)
chr7 (13-53)||(11997870-11997910)
chr7 (13-53)||(13332563-13332603)
chr7 (13-53)||(19421252-19421292)
chr7 (13-53)||(21835172-21835212)
chr7 (13-53)||(25333440-25333480)
chr7 (13-53)||(32849612-32849652)
chr7 (13-53)||(42913653-42913693)
chr7 (14-53)||(23012649-23012688)
chr7 (14-53)||(28003857-28003896)
chr7 (24-53)||(2344320-2344349)
chr7 (24-53)||(27312173-27312202)
chr7 (13-53)||(21370618-21370658)
chr7 (13-53)||(27009380-27009420)
chr7 (13-53)||(27704023-27704063)
chr7 (13-53)||(28089837-28089877)
chr7 (13-53)||(31197612-31197652)
chr7 (13-53)||(31713035-31713075)
[»] chr2 (22 HSPs)
chr2 (13-64)||(43374465-43374516)
chr2 (13-64)||(36242452-36242503)
chr2 (16-65)||(45271389-45271438)
chr2 (13-61)||(5394026-5394074)
chr2 (13-53)||(10582130-10582170)
chr2 (13-53)||(11941350-11941390)
chr2 (13-61)||(13266499-13266547)
chr2 (13-53)||(18976565-18976605)
chr2 (13-53)||(27290605-27290645)
chr2 (13-53)||(44946193-44946233)
chr2 (13-64)||(1191520-1191570)
chr2 (16-53)||(34516551-34516588)
chr2 (13-53)||(6714421-6714461)
chr2 (24-64)||(29698153-29698193)
chr2 (13-53)||(33827713-33827753)
chr2 (13-53)||(41314009-41314049)
chr2 (13-53)||(44976294-44976334)
chr2 (13-52)||(4567577-4567616)
chr2 (24-53)||(1845808-1845837)
chr2 (13-53)||(17324783-17324823)
chr2 (13-53)||(25293183-25293223)
chr2 (13-53)||(40997490-40997530)
[»] chr8 (22 HSPs)
chr8 (13-64)||(14632964-14633015)
chr8 (13-64)||(20469927-20469978)
chr8 (13-53)||(4718666-4718706)
chr8 (13-53)||(4698863-4698903)
chr8 (13-53)||(18532128-18532168)
chr8 (13-53)||(19471630-19471670)
chr8 (13-53)||(19542554-19542594)
chr8 (13-53)||(19590102-19590142)
chr8 (13-53)||(28193495-28193535)
chr8 (13-53)||(34237795-34237835)
chr8 (13-53)||(39349277-39349317)
chr8 (14-53)||(2618207-2618246)
chr8 (13-53)||(3734763-3734803)
chr8 (13-53)||(21603251-21603291)
chr8 (13-53)||(42643258-42643298)
chr8 (13-53)||(264539-264579)
chr8 (13-53)||(651342-651382)
chr8 (13-53)||(837077-837117)
chr8 (13-53)||(15259546-15259586)
chr8 (13-53)||(20305929-20305969)
chr8 (13-53)||(21092562-21092602)
chr8 (13-53)||(27746475-27746515)
[»] chr5 (30 HSPs)
chr5 (13-64)||(19456349-19456400)
chr5 (13-64)||(12398588-12398639)
chr5 (14-64)||(7151335-7151385)
chr5 (13-53)||(30485845-30485885)
chr5 (13-53)||(8484801-8484841)
chr5 (13-53)||(15641245-15641285)
chr5 (13-53)||(15971262-15971302)
chr5 (13-53)||(22392718-22392758)
chr5 (13-53)||(25586949-25586989)
chr5 (13-53)||(33709641-33709681)
chr5 (13-53)||(38631101-38631141)
chr5 (13-52)||(34049840-34049879)
chr5 (13-53)||(1827670-1827710)
chr5 (13-53)||(7085766-7085806)
chr5 (13-53)||(11926642-11926682)
chr5 (13-53)||(13038594-13038634)
chr5 (13-53)||(13108589-13108629)
chr5 (13-61)||(17015553-17015601)
chr5 (13-53)||(25750751-25750791)
chr5 (13-53)||(31288086-31288126)
chr5 (13-53)||(32059580-32059620)
chr5 (13-53)||(37495064-37495104)
chr5 (13-53)||(38684225-38684265)
chr5 (13-51)||(18207226-18207264)
chr5 (24-53)||(4603794-4603823)
chr5 (24-52)||(16616137-16616165)
chr5 (13-53)||(23270662-23270702)
chr5 (13-53)||(27498871-27498911)
chr5 (13-49)||(34310163-34310199)
chr5 (13-53)||(36954835-36954875)
[»] chr4 (27 HSPs)
chr4 (13-64)||(7392103-7392154)
chr4 (13-53)||(1985853-1985893)
chr4 (13-53)||(19660672-19660712)
chr4 (13-53)||(27528935-27528975)
chr4 (13-53)||(32986214-32986254)
chr4 (13-53)||(33696419-33696459)
chr4 (13-53)||(35229185-35229225)
chr4 (13-53)||(46714409-46714449)
chr4 (13-52)||(20078124-20078163)
chr4 (14-53)||(55961883-55961922)
chr4 (16-53)||(20566366-20566403)
chr4 (21-62)||(30879313-30879354)
chr4 (13-53)||(5609342-5609382)
chr4 (13-53)||(13873435-13873475)
chr4 (13-53)||(22625210-22625250)
chr4 (13-53)||(25852231-25852271)
chr4 (13-53)||(40058992-40059032)
chr4 (13-53)||(49287875-49287915)
chr4 (13-53)||(52983636-52983676)
chr4 (13-53)||(54127482-54127522)
chr4 (14-53)||(33992643-33992682)
chr4 (18-53)||(34722187-34722222)
chr4 (24-58)||(39288878-39288912)
chr4 (13-46)||(12500198-12500231)
chr4 (13-53)||(2351030-2351070)
chr4 (13-53)||(34844898-34844938)
chr4 (13-53)||(51535630-51535670)
[»] chr3 (32 HSPs)
chr3 (17-64)||(10083963-10084010)
chr3 (17-64)||(10190886-10190933)
chr3 (13-53)||(25289854-25289894)
chr3 (13-53)||(25379778-25379818)
chr3 (13-53)||(26108309-26108349)
chr3 (13-53)||(26174130-26174170)
chr3 (13-53)||(30807293-30807333)
chr3 (13-53)||(34492715-34492755)
chr3 (13-53)||(35492928-35492968)
chr3 (13-53)||(40940842-40940882)
chr3 (13-53)||(45529894-45529934)
chr3 (13-53)||(46576365-46576405)
chr3 (13-53)||(53424316-53424356)
chr3 (14-64)||(8958177-8958227)
chr3 (13-53)||(8456290-8456330)
chr3 (13-53)||(15566639-15566679)
chr3 (13-53)||(21362960-21363000)
chr3 (13-53)||(29915409-29915449)
chr3 (13-53)||(29964562-29964602)
chr3 (13-53)||(30257641-30257681)
chr3 (13-53)||(31537978-31538018)
chr3 (13-53)||(49258402-49258442)
chr3 (13-53)||(52455789-52455829)
chr3 (13-53)||(52821775-52821815)
chr3 (13-53)||(53234050-53234090)
chr3 (13-48)||(39041992-39042027)
chr3 (13-52)||(45272556-45272595)
chr3 (16-53)||(55287820-55287857)
chr3 (13-53)||(7485665-7485705)
chr3 (13-53)||(9842938-9842978)
chr3 (13-53)||(40133589-40133629)
chr3 (13-53)||(48977405-48977445)
[»] chr6 (20 HSPs)
chr6 (13-61)||(28968182-28968230)
chr6 (13-53)||(9238992-9239032)
chr6 (13-53)||(11448888-11448928)
chr6 (13-53)||(22576084-22576124)
chr6 (13-64)||(17706447-17706498)
chr6 (13-53)||(9843955-9843995)
chr6 (13-53)||(11007182-11007222)
chr6 (13-53)||(12591654-12591694)
chr6 (13-53)||(13753257-13753297)
chr6 (13-53)||(14212909-14212949)
chr6 (13-53)||(15360238-15360278)
chr6 (13-53)||(21148650-21148690)
chr6 (14-53)||(21982461-21982500)
chr6 (13-47)||(654286-654320)
chr6 (24-53)||(33499491-33499520)
chr6 (13-53)||(3222775-3222814)
chr6 (13-53)||(5360211-5360251)
chr6 (13-53)||(17081194-17081234)
chr6 (13-53)||(34147363-34147403)
chr6 (13-53)||(34159979-34160019)
[»] chr1 (25 HSPs)
chr1 (13-61)||(33905650-33905698)
chr1 (13-51)||(9500495-9500533)
chr1 (13-53)||(4621377-4621417)
chr1 (13-53)||(7197386-7197426)
chr1 (13-53)||(8077664-8077704)
chr1 (13-53)||(24674410-24674450)
chr1 (13-53)||(27455006-27455046)
chr1 (13-53)||(34778359-34778399)
chr1 (13-61)||(45859183-45859231)
chr1 (24-61)||(37351612-37351649)
chr1 (13-53)||(7578426-7578466)
chr1 (13-53)||(7766867-7766907)
chr1 (13-53)||(15059542-15059582)
chr1 (13-53)||(17935786-17935826)
chr1 (13-53)||(20487330-20487370)
chr1 (13-53)||(24122040-24122080)
chr1 (13-53)||(46113542-46113582)
chr1 (11-53)||(14258565-14258607)
chr1 (23-64)||(16539614-16539655)
chr1 (13-53)||(168218-168258)
chr1 (13-53)||(2272361-2272401)
chr1 (21-53)||(6776161-6776193)
chr1 (13-53)||(7946861-7946901)
chr1 (13-53)||(32930766-32930806)
chr1 (13-53)||(46607827-46607867)
[»] scaffold0623 (1 HSPs)
scaffold0623 (13-53)||(1196-1236)
[»] scaffold0459 (1 HSPs)
scaffold0459 (13-53)||(10833-10873)
[»] scaffold0366 (2 HSPs)
scaffold0366 (13-53)||(9439-9479)
scaffold0366 (13-53)||(12140-12180)
[»] scaffold0199 (1 HSPs)
scaffold0199 (13-53)||(8547-8587)
[»] scaffold0070 (1 HSPs)
scaffold0070 (13-53)||(40342-40382)
[»] scaffold0019 (1 HSPs)
scaffold0019 (13-51)||(161828-161866)
[»] scaffold0576 (1 HSPs)
scaffold0576 (13-53)||(5222-5262)
[»] scaffold0460 (1 HSPs)
scaffold0460 (13-53)||(8319-8359)
[»] scaffold0328 (1 HSPs)
scaffold0328 (13-53)||(15008-15048)
[»] scaffold0068 (1 HSPs)
scaffold0068 (13-53)||(41784-41824)
[»] scaffold0051 (1 HSPs)
scaffold0051 (17-53)||(53015-53051)
[»] scaffold0049 (1 HSPs)
scaffold0049 (13-53)||(66779-66819)
[»] scaffold0217 (1 HSPs)
scaffold0217 (13-52)||(7449-7488)
[»] scaffold0157 (1 HSPs)
scaffold0157 (13-46)||(20246-20279)
[»] scaffold0717 (1 HSPs)
scaffold0717 (13-53)||(98-138)
[»] scaffold0026 (1 HSPs)
scaffold0026 (13-53)||(97506-97546)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 28033048 - 28032896
Alignment:
Q  64 tcctacgactaatattgttttataacttactgatataataggcaatatactatataaaatttaaaagaatatgtatcgttagtgtaaatttgataaggag 163  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  28033048 tcctacgattaatattgttttataacttactgatataataggcaatatactatataaattttaaaagaatatgtatcgttaatataaatttgataaggag 28032949  T
Q  164 gtcgagggtgatctaggatttaaagga--tatagtatgttaaattggcaaatt 214  Q
    |||| |||||||||| |||||||||||  ||||||||||||||||||||||||    
T  28032948 gtcgtgggtgatctatgatttaaaggatatatagtatgttaaattggcaaatt 28032896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2103116 - 2103076
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2103116 gagacctctggaggagcaaactccaagatcccaagccaacc 2103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7176002 - 7176042
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7176002 gagacctctggaggagcaaactccaagatcccaagccaacc 7176042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 7275338 - 7275298
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7275338 gagacctctggaggagcaaactccaagatcccaagccaacc 7275298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7799972 - 7800012
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7799972 gagacctctggaggagcaaactccaagatcccaagccaacc 7800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 10091249 - 10091209
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  10091249 gagacctctggaggagcaaactccaagatcccaagccaacc 10091209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 17212114 - 17212074
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  17212114 gagacctctggaggagcaaactccaagatcccaagccaacc 17212074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 21217973 - 21218013
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  21217973 gagacctctggaggagcaaactccaagatcccaagccaacc 21218013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22119949 - 22119909
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22119949 gagacctctggaggagcaaactccaagatcccaagccaacc 22119909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22299910 - 22299870
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22299910 gagacctctggaggagcaaactccaagatcccaagccaacc 22299870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22703547 - 22703507
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22703547 gagacctctggaggagcaaactccaagatcccaagccaacc 22703507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 23854457 - 23854417
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  23854457 gagacctctggaggagcaaactccaagatcccaagccaacc 23854417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40543050 - 40543090
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  40543050 gagacctctggaggagcaaactccaagatcccaagccaacc 40543090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18044166 - 18044128
Alignment:
Q  15 gacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18044166 gacctctggaggagcaaactccaagatcccaagccaacc 18044128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2751332 - 2751292
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  2751332 gagacctttggaggagcaaactccaagatcccaagccaacc 2751292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 11997910 - 11997870
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  11997910 gagacctctagaggagcaaactccaagatcccaagccaacc 11997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13332563 - 13332603
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  13332563 gagacctcaggaggagcaaactccaagatcccaagccaacc 13332603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 19421292 - 19421252
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  19421292 gagacctctagaggagcaaactccaagatcccaagccaacc 19421252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 21835212 - 21835172
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  21835212 gagatctctggaggagcaaactccaagatcccaagccaacc 21835172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25333480 - 25333440
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  25333480 gagacctctggagaagcaaactccaagatcccaagccaacc 25333440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32849652 - 32849612
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  32849652 gagacctctggaggagcaaactccaagatcccaagtcaacc 32849612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 42913653 - 42913693
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  42913653 gagacctctagaggagcaaactccaagatcccaagccaacc 42913693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 23012649 - 23012688
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  23012649 agacctctggagaagcaaactccaagatcccaagccaacc 23012688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 28003896 - 28003857
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  28003896 agacttctggaggagcaaactccaagatcccaagccaacc 28003857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 2344349 - 2344320
Alignment:
Q  24 aggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||    
T  2344349 aggagcaaactccaagatcccaagccaacc 2344320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 27312202 - 27312173
Alignment:
Q  24 aggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||    
T  27312202 aggagcaaactccaagatcccaagccaacc 27312173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 21370658 - 21370618
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  21370658 gagacatctgaaggagtaaactccaagatcccaaaccaacc 21370618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 27009420 - 27009380
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  27009420 gagacctctggatgagcaaactccaagatccgaagccaacc 27009380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 27704063 - 27704023
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  27704063 gagacctctgtaggagcaaacttcaagatctcaagccaacc 27704023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 28089877 - 28089837
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| ||||||||||||||||||| ||||||||||    
T  28089877 gagacatctggaggagcaaactccaagatctcaagccaacc 28089837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 31197652 - 31197612
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  31197652 gagacatctggatgagcaaactccaagatcccaagccaacc 31197612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 31713035 - 31713075
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||| ||||||    
T  31713035 gagacctctcgaggagcaaactccaagatcccaaaccaacc 31713075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 43374465 - 43374516
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43374465 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 43374516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 36242452 - 36242503
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  36242452 gagacctctggaggagcaaatttcaagatcccaagccaaccccaaatgggtt 36242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 45271438 - 45271389
Alignment:
Q  16 acctctgaaggagcaaactccaagatcccaagccaaccccaaatgggttc 65  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  45271438 acctctggagaagcaaactctaagatcccaagccaaccccaaatgggttc 45271389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 5394074 - 5394026
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  5394074 gagacctttggaggagcaaactccaagatctcaagccaaccccaaatgg 5394026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 10582130 - 10582170
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  10582130 gagacctctggaggagcaaactccaagatcccaagccaacc 10582170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11941350 - 11941390
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  11941350 gagacctctggaggagcaaactccaagatcccaagccaacc 11941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 13266547 - 13266499
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  13266547 gagacctctaaaggagcaaattccaagatctcaagccaaccccaaatgg 13266499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 18976565 - 18976605
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  18976565 gagacctctggaggagcaaactccaagatcccaagccaacc 18976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 27290645 - 27290605
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27290645 gagacctctggaggagcaaactccaagatcccaagccaacc 27290605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 44946193 - 44946233
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44946193 gagacctctggaggagcaaactccaagatcccaagccaacc 44946233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 1191570 - 1191520
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  1191570 gagacctctggaggagcaaactccaagatctcaagccaa-cccaaatgggtt 1191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 34516551 - 34516588
Alignment:
Q  16 acctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  34516551 acctctggaggagcaaactccaagatcccaagccaacc 34516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 6714421 - 6714461
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  6714421 gagacctctggaggagcaaactccaagatctcaagccaacc 6714461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 29698193 - 29698153
Alignment:
Q  24 aggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  29698193 aggagcaaattccaagatcccaagccaaccccaaattggtt 29698153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 33827713 - 33827753
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  33827713 gagacctctggaggagcaatctccaagatcccaagccaacc 33827753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 41314049 - 41314009
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  41314049 gagacctctggaggagcaaactccaagatcccaaaccaacc 41314009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 44976294 - 44976334
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  44976294 gagacctctggaggagcaaaccccaagatcccaagccaacc 44976334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 4567577 - 4567616
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaac 52  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  4567577 gagacttctgaaggagcaaacttcaagatcccaagccaac 4567616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 1845808 - 1845837
Alignment:
Q  24 aggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||    
T  1845808 aggagcaaactccaagatcccaagccaacc 1845837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 17324823 - 17324783
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  17324823 gagacctctggaggagcaaactccaagataccaaaccaacc 17324783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25293223 - 25293183
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  25293223 gagacctctcgaggagcaaactccaagatcccaagtcaacc 25293183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40997490 - 40997530
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  40997490 gagacctttggaggagcaaactccaagatcccaagtcaacc 40997530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 14633015 - 14632964
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14633015 gagacctctggaggagcaaactccaagatcccaagccaaccccaaatgggtt 14632964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 20469978 - 20469927
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  20469978 gagacctctggaggagcaaactccaagatcccaagccaatcccaaatgggtt 20469927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 4718706 - 4718666
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4718706 gagacctctgaaggagcaaactccaagatcccaagccaacc 4718666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 4698863 - 4698903
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  4698863 gagacctctgaaggagcaaactccaagatcccaaaccaacc 4698903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 18532168 - 18532128
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  18532168 gagacctctggaggagcaaactccaagatcccaagccaacc 18532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 19471670 - 19471630
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  19471670 gagacctctggaggagcaaactccaagatcccaagccaacc 19471630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 19542594 - 19542554
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  19542594 gagacctctggaggagcaaactccaagatcccaagccaacc 19542554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 19590102 - 19590142
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  19590102 gagacctctggaggagcaaactccaagatcccaagccaacc 19590142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 28193535 - 28193495
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  28193535 gagacctctggaggagcaaactccaagatcccaagccaacc 28193495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 34237795 - 34237835
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  34237795 gagacctctggaggagcaaactccaagatcccaagccaacc 34237835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 39349317 - 39349277
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  39349317 gagacctctggaggagcaaactccaagatcccaagccaacc 39349277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 2618246 - 2618207
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2618246 agacctctggaggagcaaactccaagatcccaagccaacc 2618207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 3734763 - 3734803
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  3734763 gagacctttggaggagcaaactccaagatcccaagccaacc 3734803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 21603291 - 21603251
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  21603291 gagacctctggaggagcaaactctaagatcccaagccaacc 21603251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 42643258 - 42643298
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  42643258 gagacctctggaggagcaaactccaagatcccaagtcaacc 42643298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 264539 - 264579
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  264539 gagatctctggaggagcaaactcgaagatcccaagccaacc 264579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 651382 - 651342
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  651382 gagatctctggaggagcaaactcgaagatcccaagccaacc 651342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 837117 - 837077
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  837117 gagatctctggaggagcaaactcgaagatcccaagccaacc 837077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15259546 - 15259586
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||| ||||||||||||| ||||||    
T  15259546 gagacctctggaggagcaaaatccaagatcccaaaccaacc 15259586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 20305969 - 20305929
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||| |||||||||||||||||    
T  20305969 gagacctttggaggagcaaactctaagatcccaagccaacc 20305929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 21092602 - 21092562
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||| |||||||||||||||||    
T  21092602 gagacctttggaggagcaaactctaagatcccaagccaacc 21092562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27746475 - 27746515
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  27746475 gagacctttggaggagcaaactccaagatcccaaaccaacc 27746515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 19456349 - 19456400
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19456349 gagacctctggaggagcaaactccaagatcccaagccaaccccaaatgggtt 19456400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 12398588 - 12398639
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  12398588 gagacctttggaggagcaaactccaagatcccaagccaaccccaaatgggtt 12398639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 7151385 - 7151335
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7151385 agacctcttgaggagcaaactccaagatcccaagccaaccccaaatgggtt 7151335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 30485885 - 30485845
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30485885 gagacctctgaaggagcaaactccaagatcccaagccaacc 30485845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8484801 - 8484841
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8484801 gagacctctggaggagcaaactccaagatcccaagccaacc 8484841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15641245 - 15641285
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15641245 gagacctctggaggagcaaactccaagatcccaagccaacc 15641285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15971262 - 15971302
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15971262 gagacctctggaggagcaaactccaagatcccaagccaacc 15971302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22392758 - 22392718
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22392758 gagacctctggaggagcaaactccaagatcccaagccaacc 22392718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25586989 - 25586949
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  25586989 gagacctctggaggagcaaactccaagatcccaagccaacc 25586949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 33709641 - 33709681
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  33709641 gagacctctggaggagcaaactccaagatcccaagccaacc 33709681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38631101 - 38631141
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  38631101 gagacctctggaggagcaaactccaagatcccaagccaacc 38631141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 34049879 - 34049840
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaac 52  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  34049879 gagacctctggaggagcaaactccaagatcccaagccaac 34049840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1827670 - 1827710
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  1827670 gagacctctggaggagcaaactccaagatctcaagccaacc 1827710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7085766 - 7085806
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  7085766 gagacctctggaggagaaaactccaagatcccaagccaacc 7085806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11926642 - 11926682
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  11926642 gagacctctggaggagcaaactccaagatcccaaaccaacc 11926682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13038594 - 13038634
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  13038594 gagacctctggaggagcaaactccaagatcccaaaccaacc 13038634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13108589 - 13108629
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  13108589 gagatctctggaggagcaaactccaagatcccaagccaacc 13108629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 17015553 - 17015601
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    |||||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  17015553 gagacctctgaaagaggaaacttcaagatctcaagccaaccccaaatgg 17015601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 25750751 - 25750791
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  25750751 gagacctctggaggagcaaactccaagatcccaagtcaacc 25750791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 31288086 - 31288126
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  31288086 gagacctttggaggagcaaactccaagatcccaagccaacc 31288126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32059580 - 32059620
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  32059580 gagacctttggaggagcaaactccaagatcccaagccaacc 32059620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 37495104 - 37495064
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  37495104 gagacctctggaggagcaaactccaagatctcaagccaacc 37495064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 38684265 - 38684225
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  38684265 gagacctctggaggagcaaactccaagatcccaagtcaacc 38684225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 18207264 - 18207226
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaa 51  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  18207264 gagacctctggaggagcaaactccaagatcccaaaccaa 18207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 4603823 - 4603794
Alignment:
Q  24 aggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||    
T  4603823 aggagcaaactccaagatcccaagccaacc 4603794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 16616165 - 16616137
Alignment:
Q  24 aggagcaaactccaagatcccaagccaac 52  Q
    |||||||||||||||||||||||||||||    
T  16616165 aggagcaaactccaagatcccaagccaac 16616137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23270662 - 23270702
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || | ||||||||||||||||||||||||||||    
T  23270662 gagacctttggatgagcaaactccaagatcccaagccaacc 23270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27498871 - 27498911
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  27498871 gagacctctagaggagcaaactccaagattccaagccaacc 27498911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 34310199 - 34310163
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagcc 49  Q
    |||||||||| |||||||||||||||||| |||||||    
T  34310199 gagacctctggaggagcaaactccaagattccaagcc 34310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36954875 - 36954835
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  36954875 gagacctctagaggagcaaactccaagatcccaaggcaacc 36954835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7392103 - 7392154
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  7392103 gagacctttggaggagcaaactccaagatcccaagccaaccccaaatgggtt 7392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 1985893 - 1985853
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  1985893 gagacctctggaggagcaaactccaagatcccaagccaacc 1985853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 19660672 - 19660712
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  19660672 gagacctctggaggagcaaactccaagatcccaagccaacc 19660712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27528935 - 27528975
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27528935 gagacctctggaggagcaaactccaagatcccaagccaacc 27528975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32986254 - 32986214
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  32986254 gagacctctggaggagcaaactccaagatcccaagccaacc 32986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 33696419 - 33696459
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  33696419 gagacctctggaggagcaaactccaagatcccaagccaacc 33696459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 35229225 - 35229185
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  35229225 gagacctctggaggagcaaactccaagatcccaagccaacc 35229185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 46714449 - 46714409
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  46714449 gagacctctggaggagcaaactccaagatcccaagccaacc 46714409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 20078124 - 20078163
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaac 52  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  20078124 gagacctctggaggagcaaactccaagatcccaagccaac 20078163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 55961883 - 55961922
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  55961883 agacctctggaggagcaaactccaagatcccaagccaacc 55961922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 20566403 - 20566366
Alignment:
Q  16 acctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  20566403 acctctggaggagcaaactccaagatcccaagccaacc 20566366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 30879313 - 30879354
Alignment:
Q  21 tgaaggagcaaactccaagatcccaagccaaccccaaatggg 62  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  30879313 tgaaggagcaaactacaagatcccaaaccaaccccaaatggg 30879354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 5609342 - 5609382
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  5609342 gagaccactgaatgagcaaactccaagatcccaagccaacc 5609382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13873435 - 13873475
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  13873435 gagacctttgaaggagcaaactccaagatcccaagcaaacc 13873475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 22625210 - 22625250
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  22625210 gagacctctggaggagtaaactccaagatcccaagccaacc 22625250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25852271 - 25852231
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  25852271 gagacctttggaggagcaaactccaagatcccaagccaacc 25852231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40058992 - 40059032
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  40058992 gagacctctagaggagcaaactccaagatcccaagccaacc 40059032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 49287915 - 49287875
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  49287915 gagacctctggaggagcaaactccaagatcccaaaccaacc 49287875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 52983676 - 52983636
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  52983676 gagacctctggaggagcaaactccaagatctcaagccaacc 52983636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 54127482 - 54127522
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  54127482 gagacctttggaggagcaaactccaagatcccaagccaacc 54127522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 33992682 - 33992643
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  33992682 agacctctggaggagcaaactccaagatcccaaaccaacc 33992643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 34722222 - 34722187
Alignment:
Q  18 ctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34722222 ctctggaggagcaaactccaagatcccaagccaacc 34722187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 39288912 - 39288878
Alignment:
Q  24 aggagcaaactccaagatcccaagccaaccccaaa 58  Q
    ||||||||||||||||||||||| |||||||||||    
T  39288912 aggagcaaactccaagatcccaaaccaaccccaaa 39288878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 12500198 - 12500231
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaa 46  Q
    ||||||| ||||||||||||||||||||||||||    
T  12500198 gagacctttgaaggagcaaactccaagatcccaa 12500231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2351070 - 2351030
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  2351070 gagacctctggaggagcaaacttcaagattccaagccaacc 2351030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 34844898 - 34844938
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  34844898 gagacctctggaggagcaaactccaagatctcaagcaaacc 34844938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 51535670 - 51535630
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  51535670 gagacctgtggaggagcaaactccaagatcccaagtcaacc 51535630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 10083963 - 10084010
Alignment:
Q  17 cctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10083963 cctctggaggagcaaactccaagatcccaagccaaccccaaatgggtt 10084010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 10190886 - 10190933
Alignment:
Q  17 cctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10190886 cctctggaggagcaaactccaagatcccaagccaaccccaaatgggtt 10190933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 25289854 - 25289894
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  25289854 gagacctctggaggagcaaactccaagatcccaagccaacc 25289894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25379818 - 25379778
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  25379818 gagacctctggaggagcaaactccaagatcccaagccaacc 25379778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 26108349 - 26108309
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  26108349 gagacctctggaggagcaaactccaagatcccaagccaacc 26108309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 26174170 - 26174130
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  26174170 gagacctctggaggagcaaactccaagatcccaagccaacc 26174130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 30807293 - 30807333
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  30807293 gagacctctggaggagcaaactccaagatcccaagccaacc 30807333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 34492715 - 34492755
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  34492715 gagacctctggaggagcaaactccaagatcccaagccaacc 34492755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 35492968 - 35492928
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  35492968 gagacctctggaggagcaaactccaagatcccaagccaacc 35492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 40940882 - 40940842
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  40940882 gagacctctggaggagcaaactccaagatcccaagccaacc 40940842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 45529894 - 45529934
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  45529894 gagacctctggaggagcaaactccaagatcccaagccaacc 45529934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 46576405 - 46576365
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  46576405 gagacctctggaggagcaaactccaagatcccaagccaacc 46576365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 53424316 - 53424356
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  53424316 gagacctctggaggagcaaactccaagatcccaagccaacc 53424356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 8958177 - 8958227
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||| |||||||||| |||||||||||||||| ||| ||||||||||||    
T  8958177 agacctttgaaggagcagactccaagatcccaagtcaatcccaaatgggtt 8958227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8456290 - 8456330
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  8456290 gagacctctggaggagcaaactcgaagatcccaagccaacc 8456330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15566639 - 15566679
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  15566639 gagacctctggaggagcaaactccaagatctcaagccaacc 15566679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 21363000 - 21362960
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  21363000 gagacctctggaggagcaaactccaagatcccaagtcaacc 21362960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 29915409 - 29915449
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  29915409 gagacctctggaggagcaaactccaagatcccaagtcaacc 29915449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 29964562 - 29964602
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  29964562 gagacctctggaggagcaaactccaagatcccaagtcaacc 29964602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 30257681 - 30257641
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  30257681 gagacctttggaggagcaaactccaagatcccaagccaacc 30257641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 31537978 - 31538018
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  31537978 gagacctctggaggagcaaactccaagatcctaagccaacc 31538018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 49258402 - 49258442
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  49258402 gagacctctggaggagcaaactgcaagatcccaagccaacc 49258442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 52455789 - 52455829
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  52455789 gagacctctggaggagcaaactccaagatccctagccaacc 52455829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 52821775 - 52821815
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  52821775 gagacctctggaggagcaaactccaagatcccaagtcaacc 52821815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 53234050 - 53234090
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  53234050 gagacttctggaggagcaaactccaagatcccaagccaacc 53234090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 39041992 - 39042027
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagc 48  Q
    |||||||||| |||||||||||||||||||||||||    
T  39041992 gagacctctggaggagcaaactccaagatcccaagc 39042027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 45272556 - 45272595
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaac 52  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  45272556 gagacatctggaggagcaaactccaagatcccaagccaac 45272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 55287857 - 55287820
Alignment:
Q  16 acctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  55287857 acctctgaaggagcaaactctaagattccaagccaacc 55287820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7485665 - 7485705
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  7485665 gagacctttggaggagcaaactccaagatcccaagtcaacc 7485705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9842978 - 9842938
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  9842978 gagacctctggaggagaaaactccaagatcccaaaccaacc 9842938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40133589 - 40133629
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||| ||||||||||||||    
T  40133589 gagacctttggaggagcaaactccaaaatcccaagccaacc 40133629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 48977445 - 48977405
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  48977445 gagacctttggaggagcaaactccaagatcccaagtcaacc 48977405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 28968182 - 28968230
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28968182 gagacctctagaggagcaaactccaagatcccaagccaaccccaaatgg 28968230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9239032 - 9238992
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  9239032 gagacctctggaggagcaaactccaagatcccaagccaacc 9238992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 11448928 - 11448888
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  11448928 gagacctctggaggagcaaactccaagatcccaagccaacc 11448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22576124 - 22576084
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22576124 gagacctctggaggagcaaactccaagatcccaagccaacc 22576084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 17706447 - 17706498
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    ||||| |||| |||||||||||||||||||||||| ||||| ||||||||||    
T  17706447 gagacttctggaggagcaaactccaagatcccaagtcaaccacaaatgggtt 17706498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9843995 - 9843955
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  9843995 gagacctctagaggagcaaactccaagatcccaagccaacc 9843955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 11007222 - 11007182
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  11007222 gagacctttggaggagcaaactccaagatcccaagccaacc 11007182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 12591694 - 12591654
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  12591694 gagacctttggaggagcaaactccaagatcccaagccaacc 12591654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 13753297 - 13753257
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  13753297 gagacctctggaggagcaaactccaagatccaaagccaacc 13753257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 14212949 - 14212909
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  14212949 gagacctctggaggagcaaactccaagatcccgagccaacc 14212909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15360238 - 15360278
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  15360238 gagacctttggaggagcaaactccaagatcccaagccaacc 15360278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 21148650 - 21148690
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  21148650 gagacctctgaaaaagcaaactccaagatcccaagccaacc 21148690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 21982461 - 21982500
Alignment:
Q  14 agacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  21982461 agacctctggaggagcaaacttcaagatcccaagccaacc 21982500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 654286 - 654320
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaag 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  654286 gagacctctggaggagcaaactccaagatcccaag 654320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 33499520 - 33499491
Alignment:
Q  24 aggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||    
T  33499520 aggagcaaactccaagatcccaagccaacc 33499491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 3222775 - 3222814
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  3222775 gagacctctga-ggagcaaactgcaagatcccaagccaacc 3222814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 5360211 - 5360251
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||  || |||||||||||||||||||||||||||    
T  5360211 gagacctcttgagaagcaaactccaagatcccaagccaacc 5360251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 17081194 - 17081234
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| |||||||||||||||||||| |||||||||    
T  17081194 gagacatctggaggagcaaactccaagatcctaagccaacc 17081234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 34147403 - 34147363
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  34147403 gagacttctggaagagcaaactccaagatcccaagccaacc 34147363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 34160019 - 34159979
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  34160019 gagacttctggaagagcaaactccaagatcccaagccaacc 34159979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 33905650 - 33905698
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33905650 gagacctctggaggagcaaactccaagatcccaagccaaccctaaatgg 33905698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 9500495 - 9500533
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9500495 gagacctctgaaggagcaaactccaagatcccaagccaa 9500533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 4621377 - 4621417
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  4621377 gagacctctggaggagcaaactccaagatcccaagccaacc 4621417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7197386 - 7197426
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7197386 gagacctctggaggagcaaactccaagatcccaagccaacc 7197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 8077704 - 8077664
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8077704 gagacctctggaggagcaaactccaagatcccaagccaacc 8077664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 24674450 - 24674410
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  24674450 gagacctctggaggagcaaactccaagatcccaagccaacc 24674410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27455006 - 27455046
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27455006 gagacctctggaggagcaaactccaagatcccaagccaacc 27455046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 34778399 - 34778359
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  34778399 gagacctctggaggagcaaactccaagatcccaagccaacc 34778359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 45859183 - 45859231
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  45859183 gagacctctagaggagcaaactccaagatcccaagccaactccaaatgg 45859231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 37351612 - 37351649
Alignment:
Q  24 aggagcaaactccaagatcccaagccaaccccaaatgg 61  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37351612 aggagcaaactccaagatcccaagccaaccacaaatgg 37351649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 7578466 - 7578426
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  7578466 gagacctctggaggaacaaactccaagatcccaagccaacc 7578426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7766867 - 7766907
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  7766867 gagacctctggaggagcaaactccaagatcccaagctaacc 7766907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15059542 - 15059582
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  15059542 gagacctctggaggagcaaactccaagattccaagccaacc 15059582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 17935826 - 17935786
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  17935826 gagacctctggaggagcaaactccaagatcccaagtcaacc 17935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 20487330 - 20487370
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  20487330 gagacctctggaggagcaaactccaagatcccgagccaacc 20487370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 24122080 - 24122040
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  24122080 gagacctctggaggagcaaaccccaagatcccaagccaacc 24122040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 46113542 - 46113582
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  46113542 gagacctctggaggagcaaactccaagatcccaaaccaacc 46113582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 14258565 - 14258607
Alignment:
Q  11 cagagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| |||| |||| |||||||||||||||||||||||||    
T  14258565 cagagacatctggaggaacaaactccaagatcccaagccaacc 14258607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 16539655 - 16539614
Alignment:
Q  23 aaggagcaaactccaagatcccaagccaaccccaaatgggtt 64  Q
    |||||||  ||||||||||||||| |||||||||||||||||    
T  16539655 aaggagctcactccaagatcccaaaccaaccccaaatgggtt 16539614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 168258 - 168218
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| |||| |||||||||| |||||||||||||||||    
T  168258 gagacctttgaaagagcaaactctaagatcccaagccaacc 168218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2272401 - 2272361
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  2272401 gagacctctgtaggagcaaactctaagatcccaagtcaacc 2272361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 6776193 - 6776161
Alignment:
Q  21 tgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||||||||||||| ||||||    
T  6776193 tgaaggagcaaactccaagatcccaaaccaacc 6776161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 7946901 - 7946861
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  7946901 gagacctctggaggagcaaacttcaagatctcaagccaacc 7946861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32930806 - 32930766
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||||||||| |||||||||||| |||| ||||||    
T  32930806 gagacctctgaaggagtaaactccaagattccaaaccaacc 32930766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 46607867 - 46607827
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  46607867 gagacctttggaggagcaaactccaagatcccaagtcaacc 46607827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1196 - 1236
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  1196 gagacctctggaggagcaaactccaagatcccaagccaacc 1236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 10833 - 10873
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  10833 gagacctctggaggagcaaactccaagatcccaagccaacc 10873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 9439 - 9479
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  9439 gagacctctggaggagcaaactccaagatcccaagccaacc 9479  T

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Target: scaffold0366; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 12140 - 12180
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12140 gagacctctggaggagcaaactccaagatcccaagccaacc 12180  T

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Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8547 - 8587
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8547 gagacctctggaggagcaaactccaagatcccaagccaacc 8587  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 40382 - 40342
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40382 gagacctctgaaggagcaaactccaagatcctaagccaacc 40342  T

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Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 161866 - 161828
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaa 51  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  161866 gagacctctggaggagcaaactccaagatcccaagccaa 161828  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 5222 - 5262
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  5222 gagacctttggaggagcaaactccaagatcccaagccaacc 5262  T

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Target: scaffold0460 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8319 - 8359
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  8319 gagacctctggaggagcaaactccaagatcccgagccaacc 8359  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 15048 - 15008
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  15048 gagacctctggaggagcaaactccaagatcccaggccaacc 15008  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 41784 - 41824
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  41784 gagacctctggaggagcaaactccaagatcccaagtcaacc 41824  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 53015 - 53051
Alignment:
Q  17 cctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||| ||||||||||||||||||||||||||||||    
T  53015 cctctggaggagcaaactccaagatcccaagccaacc 53051  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 66819 - 66779
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  66819 gagacctttggaggagcaaactccaagatcccaagccaacc 66779  T

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Target: scaffold0217 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 7449 - 7488
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaac 52  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  7449 gagatctctggaggagcaaactccaagatcccaagccaac 7488  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 20279 - 20246
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaa 46  Q
    ||||||| ||||||||||||||||||||||||||    
T  20279 gagacctttgaaggagcaaactccaagatcccaa 20246  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 98 - 138
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    |||||||||| | ||||||||||||||||| ||||||||||    
T  98 gagacctctggacgagcaaactccaagatcacaagccaacc 138  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 97506 - 97546
Alignment:
Q  13 gagacctctgaaggagcaaactccaagatcccaagccaacc 53  Q
    ||||||| || ||||||||||| ||||||||||||||||||    
T  97506 gagacctttggaggagcaaactacaagatcccaagccaacc 97546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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