View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_low_34 (Length: 228)

Name: NF12578_low_34
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_low_34
NF12578_low_34
[»] chr5 (9 HSPs)
chr5 (49-189)||(41949333-41949473)
chr5 (49-189)||(41951731-41951871)
chr5 (118-190)||(15424587-15424660)
chr5 (49-86)||(43233926-43233963)
chr5 (49-86)||(21254249-21254286)
chr5 (49-86)||(21256721-21256758)
chr5 (49-86)||(26873161-26873198)
chr5 (129-181)||(4730610-4730662)
chr5 (119-181)||(41326269-41326331)
[»] chr3 (11 HSPs)
chr3 (49-190)||(17743000-17743141)
chr3 (49-190)||(19044320-19044461)
chr3 (59-190)||(4607434-4607565)
chr3 (49-180)||(40131944-40132075)
chr3 (80-179)||(52737859-52737957)
chr3 (122-181)||(19439476-19439535)
chr3 (44-86)||(548459-548501)
chr3 (48-86)||(782837-782875)
chr3 (49-86)||(10018777-10018814)
chr3 (49-86)||(10256091-10256128)
chr3 (49-86)||(10661756-10661793)
[»] chr8 (4 HSPs)
chr8 (49-189)||(5690756-5690896)
chr8 (122-181)||(26174272-26174331)
chr8 (122-181)||(26175417-26175476)
chr8 (49-78)||(12464815-12464844)
[»] chr7 (8 HSPs)
chr7 (91-181)||(34510703-34510793)
chr7 (91-181)||(34512813-34512903)
chr7 (122-181)||(40772944-40773003)
chr7 (49-86)||(41832707-41832744)
chr7 (49-86)||(8083389-8083426)
chr7 (49-86)||(25432168-25432205)
chr7 (49-86)||(41830301-41830338)
chr7 (122-179)||(35130554-35130611)
[»] chr2 (8 HSPs)
chr2 (49-181)||(30866088-30866220)
chr2 (49-179)||(45391828-45391957)
chr2 (122-181)||(12015081-12015140)
chr2 (48-86)||(24039559-24039597)
chr2 (49-86)||(24038364-24038401)
chr2 (49-86)||(31269463-31269500)
chr2 (48-110)||(600484-600546)
chr2 (48-86)||(31180318-31180356)
[»] chr4 (4 HSPs)
chr4 (49-180)||(21214926-21215058)
chr4 (122-184)||(13436506-13436568)
chr4 (14-48)||(29226630-29226664)
chr4 (49-86)||(2547121-2547158)
[»] chr1 (6 HSPs)
chr1 (46-93)||(2427325-2427372)
chr1 (49-135)||(26231118-26231203)
chr1 (49-135)||(29849987-29850072)
chr1 (58-152)||(26231336-26231429)
chr1 (63-165)||(35270117-35270218)
chr1 (49-110)||(12436295-12436356)
[»] chr6 (8 HSPs)
chr6 (122-181)||(29427349-29427408)
chr6 (124-181)||(14618810-14618867)
chr6 (49-181)||(6825508-6825641)
chr6 (49-86)||(30689634-30689671)
chr6 (137-181)||(6823124-6823168)
chr6 (122-181)||(10774589-10774648)
chr6 (57-107)||(3064727-3064777)
chr6 (49-86)||(8655827-8655864)
[»] scaffold0959 (1 HSPs)
scaffold0959 (49-86)||(408-445)
[»] scaffold0023 (1 HSPs)
scaffold0023 (49-86)||(111544-111581)
[»] scaffold0525 (1 HSPs)
scaffold0525 (47-86)||(2026-2065)
[»] scaffold0862 (1 HSPs)
scaffold0862 (49-86)||(323-360)
[»] scaffold0655 (1 HSPs)
scaffold0655 (50-86)||(746-782)
[»] scaffold0001 (1 HSPs)
scaffold0001 (137-181)||(144750-144794)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 41949333 - 41949473
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatcccac 41949432  T
Q  149 taataggattgttacaactatatatactactacttctctaa 189  Q
    |||| || |||||||||||||||||||||||||||| ||||    
T  41949433 taatggggttgttacaactatatatactactacttcactaa 41949473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 41951731 - 41951871
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgataataaaatgtaatattacaaatgaggaagttatcccac 41951830  T
Q  149 taataggattgttacaactatatatactactacttctctaa 189  Q
    |||| || |||||||||||||||||||||||||||| ||||    
T  41951831 taatggggttgttacaactatatatactactacttcactaa 41951871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 15424587 - 15424660
Alignment:
Q  118 tgtgatattacaaa-tgaggaagttatcccactaataggattgttacaactatatatactactacttctctaac 190  Q
    |||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  15424587 tgtgatattacaaaatgaggaagttatcccactaatggggttgttacaactatatatactactacttcactaac 15424660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 43233963 - 43233926
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaa 43233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 21254286 - 21254249
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaa 21254249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 21256758 - 21256721
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaa 21256721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 26873161 - 26873198
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaa 26873198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 4730662 - 4730610
Alignment:
Q  129 aaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||| |||||||||||| |||| ||||| |||||| |||||||||||||||    
T  4730662 aaatgatgaagttatcccattaatgggattattacaagtatatatactactac 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 41326269 - 41326331
Alignment:
Q  119 gtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||||||||||||||  | | | ||||||||| |||| |||||||| ||||||||||||||    
T  41326269 gtgatattacaaatgagtgaatcaacccactaatgggatggttacaaccatatatactactac 41326331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 17743141 - 17743000
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 17743042  T
Q  149 taataggattgttacaactatatatactactacttctctaac 190  Q
    ||||  |||||||||||||||||||||||||| ||| |||||    
T  17743041 taatgagattgttacaactatatatactactatttcactaac 17743000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 19044461 - 19044320
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 19044362  T
Q  149 taataggattgttacaactatatatactactacttctctaac 190  Q
    ||||  |||||||||||||||||||||||||| ||| |||||    
T  19044361 taatgagattgttacaactatatatactactatttcactaac 19044320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 4607565 - 4607434
Alignment:
Q  59 catggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggatt 158  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  4607565 catggtatccatggaaggaatgagagaattactatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaatggggtt 4607466  T
Q  159 gttacaactatatatactactacttctctaac 190  Q
    |||||||||||||||||||||||||| |||||    
T  4607465 gttacaactatatatactactacttcactaac 4607434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 40132075 - 40131944
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa-tagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag-gaagttatccc 146  Q
    ||||| |||| |||||||| |||||||||||||||||| ||| |   |  || |||||||||||  |||||   |||||||||||||| |||  ||||||    
T  40132075 tgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgata--aaaattgaatattacaaatgagtgaaagtatccc 40131978  T
Q  147 actaataggattgttacaactatatatactacta 180  Q
    ||||||||| |  |||||||||||||||||||||    
T  40131977 actaatagggtgattacaactatatatactacta 40131944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 52737859 - 52737957
Alignment:
Q  80 gagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaa-tgaggaagttatcccactaataggattgttacaactatatatactac 178  Q
    ||||||| |||||||||| |  |||||||||| |||   ||||||||||||| ||||  ||||| ||||||||| || | ||||||||||||||||||||    
T  52737859 gagagaaaagctatgaaact--tgtattgatattaatgagtgatattacaaaatgagtgagttaacccactaatggggtggttacaactatatatactac 52737956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 19439535 - 19439476
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||||| |||| ||||||||||||||||| ||  | |||||| |||||||||||||||    
T  19439535 atattacagatgatgaagttatcccactaatgggggtattacaagtatatatactactac 19439476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 548501 - 548459
Alignment:
Q  44 aagactgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||| |||||| |||| ||||||||||||||||||||||||||    
T  548501 aagaatgttagaaaacttggcatccatggaaggaatgagagaa 548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 782837 - 782875
Alignment:
Q  48 ctgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  782837 ctgttaggaaacatgacatccatggaaggaaggagagaa 782875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 10018777 - 10018814
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaa 10018814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 10256091 - 10256128
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaa 10256128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 10661756 - 10661793
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaa 10661793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 5690896 - 5690756
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatcccac 5690797  T
Q  149 taataggattgttacaactatatatactactacttctctaa 189  Q
    | || || |||||||||||||||||||||||||||| ||||    
T  5690796 tcatggggttgttacaactatatatactactacttcactaa 5690756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 26174331 - 26174272
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| |||||||||||||||||  | || |||||| |||||||||||||||    
T  26174331 atattacaaatgatgaagttatcccactaatgaggttattacaagtatatatactactac 26174272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 26175476 - 26175417
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| ||||||||||||||||  || || |||||| |||||||||||||||    
T  26175476 atattacaaatgatgaagttatcccactaaaggggttattacaattatatatactactac 26175417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaa 78  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 34510793 - 34510703
Alignment:
Q  91 tatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||    
T  34510793 tatgaaattgttctattgatagtaaaatgtaatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactac 34510703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 34512903 - 34512813
Alignment:
Q  91 tatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||    
T  34512903 tatgaaattgttctattgatagtaaaatgtaatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactac 34512813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 40772944 - 40773003
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  40772944 atattacaaatgatgaagttatcccactaatgggattattacaagtatatatactactac 40773003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41832744 - 41832707
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaa 41832707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 8083389 - 8083426
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaa 8083426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 25432205 - 25432168
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaa 25432168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41830338 - 41830301
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaa 41830301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 35130611 - 35130554
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactact 179  Q
    ||||||||||||||  | ||| ||||||||| || | |||||||||||||||||||||    
T  35130611 atattacaaatgagtgaattaacccactaatggggtggttacaactatatatactact 35130554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 30866220 - 30866088
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagct-atgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatccca 147  Q
    ||||||||||||||  ||||| ||| | || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| || |||| |||    
T  30866220 tgttaggaaacatgatatccaaggatg-aaggagagaaaagcttatgaaattgttctattgatagtaaaatgtgatattacaaatgagaaaattattcca 30866122  T
Q  148 ctaataggattgttacaactatatatactactac 181  Q
    ||||| || || |||||| |||||||||||||||    
T  30866121 ctaatggggttattacaagtatatatactactac 30866088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 45391828 - 45391957
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 148  Q
    ||||| ||||||||||||||||||| | || ||||||| | |||||||| | |||||||||| |||||   | |||||||||||||   | ||  |||||    
T  45391828 tgttatgaaacatggcatccatggatg-aaggagagaaaaactatgaaaatattgtattgatggtaaagaataatattacaaatgattgaattgacccac 45391926  T
Q  149 taataggattgttacaactatatatactact 179  Q
    |||| || | |||||||||||||||||||||    
T  45391927 taatggggtggttacaactatatatactact 45391957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 12015140 - 12015081
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| ||||||||||||||||| || || |||||| |||||||| ||||||    
T  12015140 atattacaaatgatgaagttatcccactaatggggttattacaagtatatatattactac 12015081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 24039597 - 24039559
Alignment:
Q  48 ctgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24039597 ctgttagaaaacatggcatccatggaaggaatgagagaa 24039559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 24038401 - 24038364
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaa 24038364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 31269463 - 31269500
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaa 31269500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 600484 - 600546
Alignment:
Q  48 ctgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgat 110  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||||| | || |||||||    
T  600484 ctgttaggaaacatgacatccatgaaaggaaagagagaaaagttatgaaagtattttattgat 600546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 31180356 - 31180318
Alignment:
Q  48 ctgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  31180356 ctgttaggaagcatggcatccatggaaggaaggagagaa 31180318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 21215058 - 21214926
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaa-tgaggaagttatccca 147  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||| |||   | ||| ||||    
T  21215058 tgttagtaaacatgacatccatggaaggaatgagagaaaagctatggaagtgttgtattgatagtaaaatatgatattacaaagtgattgaattagccca 21214959  T
Q  148 ctaataggattgttacaactatatatactacta 180  Q
    | | | || | ||||||||||||||||||||||    
T  21214958 cgactggggtggttacaactatatatactacta 21214926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 13436506 - 13436568
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactacttc 184  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13436506 atattacaaatgatgaagttatcccactaatgagattgttacaactatatatactactacttc 13436568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 29226630 - 29226664
Alignment:
Q  14 gcaaaggagtcaaaagttcttaaagatttgaagac 48  Q
    |||||||||||||||||||||||||||||||||||    
T  29226630 gcaaaggagtcaaaagttcttaaagatttgaagac 29226664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 2547158 - 2547121
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaa 2547121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 2427372 - 2427325
Alignment:
Q  46 gactgttaggaaacatggcatccatggaaggaatgagagaatagctat 93  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2427372 gactgttaggaaacatggcatccatggaaggaatgagagaaaagctat 2427325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 26231118 - 26231203
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag 135  Q
    ||||| ||||||||||||||||||| | || ||||||| || ||| ||| | ||||||| |||||||||||||||||||||||||||    
T  26231118 tgttatgaaacatggcatccatggatg-aaggagagaaaaggtattaaactattgtattcatagtaaaatgtgatattacaaatgag 26231203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 29849987 - 29850072
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag 135  Q
    ||||| ||||||||||||||||||| | || | ||||| | |||||||| | ||||||||||||||||| |||||||||||||||||    
T  29849987 tgttatgaaacatggcatccatggatg-aaggggagaaaaactatgaaactattgtattgatagtaaaaagtgatattacaaatgag 29850072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 26231336 - 26231429
Alignment:
Q  58 acatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaat 152  Q
    |||||||||||||||| | || ||||||| || |||||||   ||||||||||||||||  |||||||||||||||||  | || ||||||||||    
T  26231336 acatggcatccatggatg-aaggagagaaaagttatgaaacaattgtattgatagtaaagagtgatattacaaatgagtgaattgtcccactaat 26231429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 35270117 - 35270218
Alignment:
Q  63 gcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgtta 162  Q
    ||||||||||||| || ||||| | ||||| |||| | |||||||||||  |||  |||| ||||||||||| ||||||  |||||||||||| ||||||    
T  35270117 gcatccatggaagaaaagagaggaaagctacgaaactattgtattgatacgaaagagtgaaattacaaatgaagaagtt-gcccactaataggtttgtta 35270215  T
Q  163 caa 165  Q
    |||    
T  35270216 caa 35270218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 12436356 - 12436295
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgat 110  Q
    ||||| || ||||| |||||||| |||||||||||||| |||||||||| | ||||||||||    
T  12436356 tgttatgagacatgtcatccatgaaaggaatgagagaaaagctatgaaactattgtattgat 12436295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 29427408 - 29427349
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||    
T  29427408 atattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactac 29427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 14618810 - 14618867
Alignment:
Q  124 attacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||    
T  14618810 attacaaatgatgaagttatcccactaatggggttattacaagtatatatactactac 14618867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 6825508 - 6825641
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaa-ttgttgtattgatagtaaaatgtgatattac-aaatgag--gaagttatc 144  Q
    |||||||||||||||||||||||||||||| |||| || | |||  ||| |  ||||||||||||  |||||  ||||||| |||||||   ||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataa-atctaacaaactctttgtattgatag--aaatggaatattacaaaatgagaaaaagttatc 6825604  T
Q  145 ccactaataggattgttacaactatatatactactac 181  Q
    |||||||| || || |||||| |||||||||||||||    
T  6825605 ccactaatggggttattacaagtatatatactactac 6825641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 30689634 - 30689671
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaa 30689671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 6823124 - 6823168
Alignment:
Q  137 aagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  6823124 aagttatcccactaatagggttattacaagtatatatactactac 6823168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 10774589 - 10774648
Alignment:
Q  122 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 181  Q
    ||||||||||||| |||||||||||||||||  | || |||||| |||||||| ||||||    
T  10774589 atattacaaatgatgaagttatcccactaatgaggttattacaagtatatatattactac 10774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 3064727 - 3064777
Alignment:
Q  57 aacatggcatccatggaaggaatgagagaatagctatgaaattgttgtatt 107  Q
    ||||||||||||||| |||||||||||||| || ||||||| | |||||||    
T  3064727 aacatggcatccatgaaaggaatgagagaaaagttatgaaagtattgtatt 3064777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 8655827 - 8655864
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaa 8655864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 408 - 445
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||| |||||||||||||||||||||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaa 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 111544 - 111581
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||||||||||||||||||||||||||| |||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaa 111581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 2026 - 2065
Alignment:
Q  47 actgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  2026 actgttgggaaacatggcatccatggaaggaaggagagaa 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 360 - 323
Alignment:
Q  49 tgttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaa 323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 782 - 746
Alignment:
Q  50 gttaggaaacatggcatccatggaaggaatgagagaa 86  Q
    ||||||||||||||||||| | |||||||||||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaa 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 144750 - 144794
Alignment:
Q  137 aagttatcccactaataggattgttacaactatatatactactac 181  Q
    |||||||||||||||| || || |||||| |||||||||||||||    
T  144750 aagttatcccactaatggggttattacaagtatatatactactac 144794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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