View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_low_35 (Length: 228)

Name: NF12578_low_35
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_low_35
NF12578_low_35
[»] chr7 (31 HSPs)
chr7 (20-174)||(21545632-21545786)
chr7 (56-174)||(29544675-29544793)
chr7 (28-174)||(20017109-20017254)
chr7 (56-174)||(7494852-7494969)
chr7 (25-168)||(20470620-20470763)
chr7 (69-174)||(9801729-9801833)
chr7 (56-118)||(315384-315446)
chr7 (80-169)||(18496725-18496814)
chr7 (28-174)||(21471952-21472096)
chr7 (83-174)||(23125056-23125147)
chr7 (98-177)||(30405746-30405825)
chr7 (28-118)||(7815534-7815624)
chr7 (25-159)||(10670385-10670518)
chr7 (59-174)||(22067647-22067761)
chr7 (54-174)||(24596843-24596963)
chr7 (93-174)||(5312664-5312745)
chr7 (62-170)||(9070548-9070655)
chr7 (107-163)||(12358655-12358711)
chr7 (80-166)||(1074616-1074702)
chr7 (28-174)||(7142254-7142398)
chr7 (108-174)||(22532538-22532604)
chr7 (80-131)||(4828986-4829037)
chr7 (127-174)||(9761328-9761374)
chr7 (78-174)||(20461509-20461607)
chr7 (69-169)||(7493474-7493573)
chr7 (80-140)||(8308901-8308961)
chr7 (80-174)||(20446358-20446451)
chr7 (104-162)||(14649663-14649721)
chr7 (28-113)||(2630290-2630375)
chr7 (69-174)||(7777895-7777998)
chr7 (66-99)||(9761283-9761316)
[»] scaffold0650 (1 HSPs)
scaffold0650 (25-174)||(5581-5728)
[»] chr1 (31 HSPs)
chr1 (56-174)||(11769835-11769953)
chr1 (69-174)||(18300857-18300962)
chr1 (69-174)||(30675640-30675744)
chr1 (83-172)||(52271113-52271202)
chr1 (45-169)||(26657637-26657760)
chr1 (80-169)||(26854185-26854274)
chr1 (69-177)||(50047327-50047435)
chr1 (56-171)||(23519610-23519724)
chr1 (75-156)||(25494349-25494430)
chr1 (28-174)||(30781916-30782061)
chr1 (66-164)||(9328333-9328430)
chr1 (53-174)||(25727748-25727868)
chr1 (53-174)||(25736156-25736276)
chr1 (56-147)||(12423756-12423847)
chr1 (63-174)||(26102212-26102323)
chr1 (83-174)||(19257674-19257763)
chr1 (90-174)||(25730446-25730530)
chr1 (68-161)||(23223581-23223675)
chr1 (80-177)||(15298736-15298832)
chr1 (80-168)||(25373907-25373995)
chr1 (66-164)||(9353178-9353275)
chr1 (80-174)||(25126635-25126729)
chr1 (64-164)||(9252459-9252558)
chr1 (80-120)||(23505965-23506005)
chr1 (80-139)||(25665635-25665694)
chr1 (104-174)||(31313707-31313777)
chr1 (54-157)||(21548820-21548923)
chr1 (131-174)||(34381866-34381909)
chr1 (104-174)||(27461070-27461140)
chr1 (46-98)||(12810436-12810489)
chr1 (58-134)||(23521562-23521638)
[»] chr6 (14 HSPs)
chr6 (28-174)||(17860262-17860407)
chr6 (78-172)||(26499710-26499804)
chr6 (56-173)||(30355473-30355590)
chr6 (39-174)||(15575080-15575214)
chr6 (91-174)||(33638381-33638464)
chr6 (80-174)||(24507308-24507401)
chr6 (90-156)||(33638259-33638325)
chr6 (70-113)||(15998726-15998769)
chr6 (104-174)||(9396496-9396566)
chr6 (78-169)||(26512642-26512733)
chr6 (78-169)||(26517758-26517849)
chr6 (117-171)||(12972287-12972341)
chr6 (124-168)||(16439619-16439663)
chr6 (95-159)||(24618053-24618117)
[»] chr5 (26 HSPs)
chr5 (56-174)||(26329911-26330028)
chr5 (64-174)||(16622526-16622635)
chr5 (56-174)||(25594534-25594651)
chr5 (69-174)||(11274184-11274289)
chr5 (56-172)||(24841911-24842026)
chr5 (35-174)||(17027683-17027821)
chr5 (78-174)||(7742733-7742829)
chr5 (80-174)||(30072271-30072365)
chr5 (28-177)||(25680740-25680888)
chr5 (78-174)||(18452675-18452771)
chr5 (45-174)||(22229960-22230088)
chr5 (25-174)||(24517501-24517650)
chr5 (80-152)||(19763751-19763823)
chr5 (78-174)||(16634202-16634298)
chr5 (83-165)||(22643773-22643855)
chr5 (80-169)||(23157669-23157758)
chr5 (80-168)||(18178263-18178351)
chr5 (80-174)||(19331665-19331759)
chr5 (80-174)||(26070629-26070723)
chr5 (56-174)||(12339856-12339973)
chr5 (69-169)||(17381895-17381998)
chr5 (88-159)||(24130798-24130869)
chr5 (115-174)||(24410830-24410889)
chr5 (106-168)||(20694801-20694863)
chr5 (105-174)||(20083622-20083691)
chr5 (78-110)||(15695105-15695137)
[»] chr4 (27 HSPs)
chr4 (27-174)||(15192359-15192505)
chr4 (25-174)||(12111138-12111285)
chr4 (80-169)||(31859766-31859855)
chr4 (28-174)||(5676355-5676501)
chr4 (25-174)||(34864107-34864254)
chr4 (56-174)||(17026538-17026655)
chr4 (28-174)||(27302933-27303078)
chr4 (44-168)||(47024595-47024718)
chr4 (78-158)||(17187344-17187424)
chr4 (56-174)||(1695688-1695805)
chr4 (28-174)||(5906576-5906722)
chr4 (80-174)||(13064581-13064675)
chr4 (45-174)||(18898138-18898266)
chr4 (45-174)||(51884758-51884886)
chr4 (64-168)||(10320070-10320173)
chr4 (80-154)||(21077408-21077482)
chr4 (80-177)||(22119773-22119869)
chr4 (83-158)||(33519201-33519276)
chr4 (88-174)||(7024092-7024178)
chr4 (84-174)||(19601954-19602043)
chr4 (80-174)||(23353777-23353867)
chr4 (56-168)||(25315073-25315184)
chr4 (80-174)||(29437626-29437710)
chr4 (86-139)||(20985264-20985317)
chr4 (126-174)||(9288365-9288413)
chr4 (80-174)||(26159911-26160004)
chr4 (121-174)||(18444405-18444458)
[»] chr3 (24 HSPs)
chr3 (83-174)||(19219079-19219170)
chr3 (45-174)||(10341942-10342071)
chr3 (56-166)||(25883267-25883376)
chr3 (80-174)||(19542989-19543083)
chr3 (78-174)||(19263767-19263866)
chr3 (80-168)||(18474331-18474419)
chr3 (56-174)||(1475121-1475238)
chr3 (28-138)||(18065987-18066098)
chr3 (28-174)||(16970617-16970762)
chr3 (28-140)||(11521354-11521466)
chr3 (80-174)||(8402416-8402511)
chr3 (87-168)||(23908143-23908224)
chr3 (45-166)||(27415332-27415451)
chr3 (80-174)||(21828998-21829092)
chr3 (88-174)||(25919345-25919430)
chr3 (96-174)||(28422608-28422685)
chr3 (93-174)||(11475002-11475083)
chr3 (45-174)||(33914398-33914526)
chr3 (82-169)||(30493132-30493219)
chr3 (73-171)||(21018036-21018133)
chr3 (88-168)||(26418881-26418961)
chr3 (80-155)||(5632408-5632482)
chr3 (127-167)||(25188919-25188960)
chr3 (124-168)||(13911419-13911462)
[»] scaffold0188 (1 HSPs)
scaffold0188 (69-174)||(26809-26914)
[»] scaffold0171 (2 HSPs)
scaffold0171 (63-168)||(21559-21664)
scaffold0171 (68-174)||(6351-6456)
[»] chr8 (26 HSPs)
chr8 (28-174)||(16054450-16054595)
chr8 (28-174)||(11310070-11310214)
chr8 (56-174)||(16052118-16052236)
chr8 (28-174)||(28902245-28902390)
chr8 (56-168)||(28901191-28901302)
chr8 (80-169)||(30850965-30851054)
chr8 (56-147)||(13081776-13081867)
chr8 (83-174)||(29291925-29292016)
chr8 (56-174)||(24120379-24120497)
chr8 (45-166)||(24696745-24696867)
chr8 (80-174)||(28291966-28292060)
chr8 (56-174)||(14976953-14977068)
chr8 (70-174)||(22894387-22894490)
chr8 (78-174)||(32239443-32239539)
chr8 (80-174)||(30543916-30544011)
chr8 (80-166)||(11437583-11437669)
chr8 (81-174)||(6888059-6888152)
chr8 (93-174)||(13583398-13583479)
chr8 (95-174)||(28859119-28859198)
chr8 (80-169)||(5153918-5154007)
chr8 (54-158)||(5569979-5570083)
chr8 (80-158)||(31436644-31436718)
chr8 (80-174)||(12956636-12956731)
chr8 (86-156)||(14424684-14424754)
chr8 (53-139)||(23408095-23408181)
chr8 (80-155)||(27097667-27097740)
[»] chr2 (23 HSPs)
chr2 (56-174)||(27417104-27417222)
chr2 (28-145)||(16593564-16593681)
chr2 (80-174)||(17415029-17415122)
chr2 (80-174)||(30998927-30999020)
chr2 (81-174)||(24188125-24188217)
chr2 (86-174)||(14921910-14921998)
chr2 (28-174)||(35707959-35708104)
chr2 (80-174)||(1732706-1732800)
chr2 (80-158)||(18818873-18818951)
chr2 (78-139)||(22525683-22525744)
chr2 (83-174)||(21505007-21505098)
chr2 (56-139)||(25474227-25474310)
chr2 (28-110)||(15829350-15829432)
chr2 (80-174)||(18236168-18236262)
chr2 (80-174)||(19541192-19541285)
chr2 (104-169)||(17152314-17152379)
chr2 (80-169)||(34063706-34063795)
chr2 (56-107)||(19949366-19949417)
chr2 (85-163)||(31262163-31262241)
chr2 (78-154)||(31274131-31274207)
chr2 (56-174)||(1733247-1733364)
chr2 (91-163)||(32619792-32619863)
chr2 (129-168)||(24047543-24047582)
[»] scaffold0282 (1 HSPs)
scaffold0282 (64-174)||(22463-22572)
[»] scaffold0011 (1 HSPs)
scaffold0011 (80-174)||(228052-228145)
[»] scaffold0190 (1 HSPs)
scaffold0190 (81-152)||(11564-11635)
[»] scaffold0362 (1 HSPs)
scaffold0362 (28-138)||(7810-7920)
[»] scaffold0386 (2 HSPs)
scaffold0386 (47-162)||(11631-11746)
scaffold0386 (28-119)||(8522-8613)
[»] scaffold0337 (1 HSPs)
scaffold0337 (80-174)||(1964-2057)
[»] scaffold1149 (1 HSPs)
scaffold1149 (80-138)||(1978-2036)
[»] scaffold1026 (1 HSPs)
scaffold1026 (86-136)||(1701-1751)
[»] scaffold0065 (1 HSPs)
scaffold0065 (80-174)||(12400-12493)
[»] scaffold0836 (1 HSPs)
scaffold0836 (86-120)||(2817-2851)
[»] scaffold0185 (1 HSPs)
scaffold0185 (84-145)||(2684-2745)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 21545632 - 21545786
Alignment:
Q  20 gtgttaaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaa 119  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  21545632 gtgtgaaatcttgcgttttcatcctgttttcggttattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttttattgtcttcaaa 21545731  T
Q  120 tactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21545732 tactttctaagaaccattgatcttcaatcttcatatccttgatccttcacgtgat 21545786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 29544793 - 29544675
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||| ||||||||||||||    
T  29544793 ttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatat 29544694  T
Q  156 ccttgatccttcacgtgat 174  Q
    | ||||||||||| |||||    
T  29544693 ctttgatccttcatgtgat 29544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 20017254 - 20017109
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| |||||||||||    ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||  || ||||    
T  20017254 tcttgtgttttcgtcatgttttcgactgttctttcgtttgtaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaagaaccttct 20017155  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||    
T  20017154 aagaaccattga-gttcaatcttcatatgcttaatccttcacatgat 20017109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 7494969 - 7494852
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||   || |||||||||||||| |  ||||||||||||||    
T  7494969 ttcttccgtctggaaactcctagaatcttgaaataaattttcttcactttgtattgtcttcatggaccttctaagaaccatt-aacttcaatcttcatat 7494871  T
Q  156 ccttgatccttcacgtgat 174  Q
    ||||||||||||| |||||    
T  7494870 ccttgatccttcatgtgat 7494852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 20470620 - 20470763
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    ||||||| |||||||||  |||||||| || |||||  |||||||||||| ||  |||||||||| ||||||||||| ||||||||||| ||||  || |    
T  20470620 aaatcttacgttttcatattgttttcgatcgttcttctgtctggaaactcatacgaacttgaaatcaattttcttcattttgtattgtcttcaagaacct 20470719  T
Q  125 tctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||||||||  |||||| |||| |||||||||| ||||    
T  20470720 tctaagaaccattgaacttcaatattcacatccttgatcgttca 20470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 9801729 - 9801833
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||| |||||||||| ||||||| |||||||||||| || | ||| || || |||||||||||||  |||||||||||||||||||||||||||    
T  9801729 aaactcctaggaacttgaaataaattttcctcactttgtattttctttaaaaaccttttaagaaccattga-cttcaatcttcatatccttgatccttca 9801827  T
Q  169 cgtgat 174  Q
    | ||||    
T  9801828 catgat 9801833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 315446 - 315384
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  315446 ttctttcgtctggaaactcctaggaacttgaaatgaattttattcactttgtattgtcttcaa 315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 18496814 - 18496725
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||||||||||||||||||  ||||||| || ||||  || ||||||||||||||  | ||||||||||||||||||||||||||||    
T  18496814 aacttgaaatgaattttcttcatcttgtattttcttcaacaacattctaagaaccattattcttcaatcttcatatccttgatccttcac 18496725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 21472096 - 21471952
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| || |||||||| || ||||| ||| || |||||||||| ||||||||||||| |||| |||||||||||| || ||||  || ||||    
T  21472096 tcttgcgttttcgtcctgttttcgatcgttcttccgtatgaaaactcctaggaacttgaaatgaa-tttcgtcactttgtattttcttcaataaccttct 21471998  T
Q  128 aagaaccattgatattcaa-tcttcatatccttgatccttcacgtgat 174  Q
    ||||||| || || ||||| |||||  ||||||||||| |||||||||    
T  21471997 aagaaccctttatcttcaattcttc--atccttgatccctcacgtgat 21471952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 23125147 - 23125056
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||||||||||||||| | ||  |  || |||||||||||||  ||||||||||||||||| |||||||||| ||||    
T  23125147 ttgaaatgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcatatcctcgatccttcacatgat 23125056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 30405825 - 30405746
Alignment:
Q  98 ttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgatttc 177  Q
    |||||||||||||||  |||||||| ||||||||| ||||||  ||||||||||||||||| |||||||||| |||||||    
T  30405825 ttcactttgtattgtattcaaataccttctaagaatcattgaacttcaatcttcatatcctcgatccttcacatgatttc 30405746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 7815624 - 7815534
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaa 118  Q
    |||||||||||  || | |||||| || ||||| |||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  7815624 tcttgcgtttttgtcctattttcgatcgttcttccgtctgaaaactcctatgaacttgaaatgaattttcttcactttgtattgtcttcaa 7815534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 10670385 - 10670518
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    |||| |||||||||  ||| ||||| ||||  |||| |||||| |||||||||  |||||||||||| |||| |||||||||||||||| |  || || |    
T  10670385 aaatattgcgtttttctcacgtttttggtcgatcttccgtctgaaaactcctacgaacttgaaatgatttttattcactttgtattgtcttagaaaacct 10670484  T
Q  125 tctaagaaccattgatattcaatcttcatatcctt 159  Q
    |||||||||||||||  ||| ||||||||||||||    
T  10670485 tctaagaaccattga-cttcgatcttcatatcctt 10670518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 22067647 - 22067761
Alignment:
Q  59 tttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa-tcttcatatcc 157  Q
    ||||||||  |||||||||| ||||||||||||||| | |||||||||||||||| ||||  || ||||||||||| ||||| ||||| | |||  ||||    
T  22067647 tttcgtctaaaaactcctaggaacttgaaatgaattcttttcactttgtattgtcttcaacaaccttctaagaacccttgattttcaattgttc--atcc 22067744  T
Q  158 ttgatccttcacgtgat 174  Q
    |||||||||||| ||||    
T  22067745 ttgatccttcacatgat 22067761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 24596843 - 24596963
Alignment:
Q  54 cattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcat 153  Q
    ||||||||||||| | ||  ||| | ||||| |||||||||||||||||||||||||||| ||||||   ||||| |||||| |||  ||||||||| ||    
T  24596843 cattctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctttat 24596942  T
Q  154 atccttgatccttcacgtgat 174  Q
    ||||| |||| | ||||||||    
T  24596943 atcctcgatcttccacgtgat 24596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 5312664 - 5312745
Alignment:
Q  93 ttttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||  |||||||||| ||||| |  |||||||||||||| || ||||||| |||||||||||||||||||| ||||    
T  5312664 ttttcttcatcttgtattgtcttcaaaaatcttctaagaaccatttatgttcaatcctcatatccttgatccttcacttgat 5312745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 9070655 - 9070548
Alignment:
Q  62 cgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttga 161  Q
    |||| ||| |||||||  |||||||| ||||| ||||||||||| ||||||| | ||| || ||||||||||  ||||| ||| || |||||||||||||    
T  9070655 cgtcaggacactcctacgaacttgaactgaatattcttcactttatattgtcttaaaaaaccttctaagaacacttgat-ttcgatattcatatccttga 9070557  T
Q  162 tccttcacg 170  Q
    |||||||||    
T  9070556 tccttcacg 9070548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 12358655 - 12358711
Alignment:
Q  107 tattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatccttgatc 12358711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 1074702 - 1074616
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatcctt 166  Q
    |||||||||| | |||||||||  |||||||||| ||||  || || |||||||||||| | |||||| ||||||||||||||||||    
T  1074702 aacttgaaattacttttcttcatcttgtattgtcttcaacaaccttttaagaaccattggtcttcaattttcatatccttgatcctt 1074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 7142398 - 7142254
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||| || ||||| ||||||  |  |||||| |||||| |||| |||||||| | |||||||| || ||||| || |  |    
T  7142398 tcttgcgttttc-tccggttttcgatcgttcttccgtctgacatatcctaggaacttgcaatggattttctttaatttgtattctcttcaaaaacctatt 7142300  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    || |||||| || |||||||||||||||| |||||||||||||||||    
T  7142299 aaaaaccatcga-attcaatcttcatatctttgatccttcacgtgat 7142254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 22532538 - 22532604
Alignment:
Q  108 attgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||    
T  22532538 attgtcttcaaaaactttctaagaaccattgatattcattcttcgtatcctcgatccatcatgtgat 22532604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 4829037 - 4828986
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaaga 131  Q
    ||||||||||||||| |||||||||||||||||| |||||||  ||||||||    
T  4829037 aacttgaaatgaattatcttcactttgtattgtcttcaaataacttctaaga 4828986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 9761328 - 9761374
Alignment:
Q  127 taagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  9761328 taagaaccattgac-ttcaatcttcatatccttgatccttcacgtgat 9761374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 20461509 - 20461607
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcg--tcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||| |||||| |||||||||||||||||   | |||||| ||  ||||| |  || | |||||||||||||||||||||||||||| ||||    
T  20461509 gaaacttgaaaggaatttacttcactttgtattgtctcttaaaataccttgcaagaatcggtggtcttcaatcttcatatccttgatccttcacttgat 20461607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 7493573 - 7493474
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    ||||||||||||| ||| |||||||||| |||| |||||||| || ||||  || || |||||||| ||||| |||||| | ||||| ||||| ||||||    
T  7493573 aaactcctagaaatttggaatgaatttttttcattttgtattatcttcaataaccttttaagaacccttgatcttcaat-tccatattcttgaaccttca 7493475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 8308901 - 8308961
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgat 140  Q
    ||||||| |||||| ||||| | ||||||||||| ||||| || |||||||||||||||||    
T  8308901 aacttgatatgaatcttctttattttgtattgtcttcaaagaccttctaagaaccattgat 8308961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 20446451 - 20446358
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa-tcttcatatccttgatccttcacgtgat 174  Q
    ||||| |||||| |||| |||||||||||||||| ||||  || ||||||||||| ||||| ||||| |||||  ||| |||||||||||| ||||    
T  20446451 aacttaaaatgattttttttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaattcttc--atctttgatccttcacttgat 20446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 14649721 - 14649663
Alignment:
Q  104 ttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgat 162  Q
    |||||||||| ||||| || |||||| |||||||||| |||| | ||||||||||||||    
T  14649721 ttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcatatccttgat 14649663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 2630290 - 2630375
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtc 113  Q
    |||||||||||  |  |||||||| || |||||||  ||| |||||||||| |||||||||| |||| |||||| ||| |||||||    
T  2630290 tcttgcgttttatttttgttttcgatcgttctttctcctgaaaactcctaggaacttgaaattaattgtcttcaatttttattgtc 2630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 7777895 - 7777998
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||| ||| ||||||  |||| ||||||||||||| ||||||| ||||  || || |||||| ||||  | |||||| |||||||| |||||||||||    
T  7777895 aaactcttaggaacttggtatgatttttcttcactttatattgtcctcaacaaccttttaagaa-cattagttttcaat-ttcatatcgttgatccttca 7777992  T
Q  169 cgtgat 174  Q
    ||||||    
T  7777993 cgtgat 7777998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 9761283 - 9761316
Alignment:
Q  66 tggaaactcctagaaacttgaaatgaattttctt 99  Q
    ||||||||||||| ||||||||||||||||||||    
T  9761283 tggaaactcctaggaacttgaaatgaattttctt 9761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 5581 - 5728
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    ||||||||||||||| || |||||||| || ||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||| || | ||| || |    
T  5581 aaatcttgcgttttc-tcctgttttcgatcgttcttccgtctgaaaactcctacaaacttgaattgaattttcttcactttgtattttctttaaagacct 5679  T
Q  125 tctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  5680 tctaagaaccattga-attcaatcttcatatcctcgatccttcatgtgat 5728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 11769835 - 11769953
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||    
T  11769835 ttcttccgtctggaaactcataggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatat 11769934  T
Q  156 ccttgatccttcacgtgat 174  Q
    | |||||| |||| |||||    
T  11769935 ctttgatcattcatgtgat 11769953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 18300857 - 18300962
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||| || ||||||| | ||||||||||| ||||||||| ||||| || ||||||||||||||| |||| ||||||||||||||||||||||||    
T  18300857 aaactcctaggaatttgaaataatttttcttcactctgtattgtcttcaaaaaccttctaagaaccattggtatttaatcttcatatccttgatccttca 18300956  T
Q  169 cgtgat 174  Q
    ||||||    
T  18300957 cgtgat 18300962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 30675744 - 30675640
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||| ||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| || ||||||||||||    
T  30675744 aaactcctaggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaaccattgat-ttcaatcttcacattcttgatccttca 30675646  T
Q  169 cgtgat 174  Q
    | ||||    
T  30675645 catgat 30675640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 52271113 - 52271202
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtg 172  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||  ||||||||||||||||| |||||||||||||    
T  52271113 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcatatcctcgatccttcacgtg 52271202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 26657760 - 26657637
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||| || || ||||||| |||||  |||    
T  26657760 gttttcgatcattctttcgtctgaaaactcctaggaacttgaaatgaattttcttcactttgttttgtcttcaaaaaccttataagaactattga-cttc 26657662  T
Q  145 aatcttcatatccttgatccttcac 169  Q
     || |||||| ||||||||||||||    
T  26657661 gattttcatagccttgatccttcac 26657637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 26854185 - 26854274
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  26854185 aacttcaaatgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcatatcattgatccttcac 26854274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 50047435 - 50047327
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||| ||||  || || |||| ||||||||| |||||| |||||| |||||||||||||    
T  50047435 aaactcctaggaacttaaaatgaattttcttcattttgtattgtcttcaataaccttttaagtaccattgatcttcaatattcatacccttgatccttca 50047336  T
Q  169 cgtgatttc 177  Q
    |||||||||    
T  50047335 cgtgatttc 50047327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 23519610 - 23519724
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||| |||||||||| |||||||||| ||||||||||||||| ||||||| ||||  || ||||||||||||||| | |||||| |||||||    
T  23519610 ttcttccgtctgaaaactcctaggaacttgaaataaattttcttcactttctattgtcttcaacaaccttctaagaaccattggtcttcaat-ttcatat 23519708  T
Q  156 ccttgatccttcacgt 171  Q
     |||||||||||||||    
T  23519709 tcttgatccttcacgt 23519724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 25494349 - 25494430
Alignment:
Q  75 ctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatc 156  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||    
T  25494349 ctagaaatttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatc 25494430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 30782061 - 30781916
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| || |||||||| || |||||| | ||| |||| ||||| |||||||||| ||||||||||||||||||||||| ||||  || || |    
T  30782061 tcttgcgttttcttcctgttttcgatcgttcttttgcctgaaaacacctaggaacttgaaatcaattttcttcactttgtattgtcttcaacaacctttt 30781962  T
Q  128 aagaaccattgatattcaa-tcttcatatccttgatccttcacgtgat 174  Q
    ||||||| ||||| ||||| |||||  |||||||||||||||| ||||    
T  30781961 aagaacccttgatcttcaattcttc--atccttgatccttcacatgat 30781916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 9328430 - 9328333
Alignment:
Q  66 tggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatcc 164  Q
    ||||||||||||| |||||| | |||||||||||||||| |||||||| ||||| || |||||||||| ||||| ||||||||||||||||| ||||||    
T  9328430 tggaaactcctaggaacttggactgaattttcttcacttagtattgtcttcaaaaaccttctaagaacgattga-attcaatcttcatatccctgatcc 9328333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 25727748 - 25727868
Alignment:
Q  53 tcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttca 152  Q
    |||||||| | |||||||||| |||| ||||| |||  ||||| |||||||||| |||||| ||||| || ||| ||||||||||||| |||||||||||    
T  25727748 tcattcttccatctggaaacttctaggaacttcaaaaaaattt-cttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttca 25727846  T
Q  153 tatccttgatccttcacgtgat 174  Q
    ||||||| |||||||| |||||    
T  25727847 tatccttaatccttcatgtgat 25727868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 25736156 - 25736276
Alignment:
Q  53 tcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttca 152  Q
    |||||||| | |||||||||| |||| ||||| |||  ||||| |||||||||| |||||| ||||| || ||| ||||||||||||| |||||||||||    
T  25736156 tcattcttccatctggaaacttctaggaacttcaaaaaaattt-cttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttca 25736254  T
Q  153 tatccttgatccttcacgtgat 174  Q
    ||||||| |||||||| |||||    
T  25736255 tatccttaatccttcatgtgat 25736276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 12423756 - 12423847
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaat 147  Q
    ||||||||| || |||||||||| |||||||||||||||| ||||||||||||||||| ||||  || ||||||||||| ||||| ||||||    
T  12423756 ttctttcgtttgaaaactcctaggaacttgaaatgaatttccttcactttgtattgtcttcaacaaccttctaagaacctttgatcttcaat 12423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 26102323 - 26102212
Alignment:
Q  63 gtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgat 162  Q
    |||| |||| |||| ||||||||| |||||||||| |||  |||||||||| ||||| || |||||| || ||||||| |||| ||||||||||||||||    
T  26102323 gtcttgaaattccttgaaacttgagatgaattttcctcaacttgtattgtcttcaaaaaccttctaaaaatcattgatcttcattcttcatatccttgat 26102224  T
Q  163 ccttcacgtgat 174  Q
    | ||||||||||    
T  26102223 cattcacgtgat 26102212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 19257674 - 19257763
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||| ||||||||||||||||||||||| ||||| || ||||||||||  ||||| ||||||||||||||||| |||| |||| |||||    
T  19257674 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac--ttgatgttcaatcttcatatcctcgatctttcatgtgat 19257763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 25730446 - 25730530
Alignment:
Q  90 gaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||  |||||||||||| || ||| ||||||||||||| || ||||||||| |||||||||||||| |||||    
T  25730446 gaattttcttcactttcgattgtcgtcaaaaaccttccaagaaccattgatcttaaatcttcatctccttgatccttcatgtgat 25730530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 23223675 - 23223581
Alignment:
Q  68 gaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtc-aaatactttctaagaaccattgatattcaatcttcatatccttga 161  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| || ||| || ||||| |||  |||| | ||||||||||||||||||||    
T  23223675 gaaactcctaggaacttgaaatgaatttttttcactttgtattgtcttcaaaaaaccttctatgaattattggttttcaatcttcatatccttga 23223581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 15298736 - 15298832
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgatttc 177  Q
    ||||||||||||||||| ||||| |||||||| | |||||||  || |||||||||||||| || |||||||||||||| ||||||| || |||||||    
T  15298736 aacttgaaatgaattttattcacattgtattg-cttcaaataacttttaagaaccattgatcttgaatcttcatatcctcgatcctttacatgatttc 15298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 25373995 - 25373907
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    ||||||||||||||||||||||  |||||||||| | ||  || ||||||||||||||| | || |||||||||||||| |||||||||    
T  25373995 aacttgaaatgaattttcttcatcttgtattgtcttaaacaaccttctaagaaccattggtctttaatcttcatatcctggatccttca 25373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 9353275 - 9353178
Alignment:
Q  66 tggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatcc 164  Q
    ||||||||| ||| |||||| | |||||||||||||||| ||||| || ||||| || |||||||||  ||||| ||||||||||||||||| ||||||    
T  9353275 tggaaactcataggaacttggactgaattttcttcacttagtattttcttcaaaaaccttctaagaatgattga-attcaatcttcatatccctgatcc 9353178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 25126729 - 25126635
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||| ||||||||||  ||||| | ||||||||||| |||||| |  | || |||||||||  ||||||||||||||    
T  25126729 aacttgaaatgaattttcttcattttgtattgtattcaaagattttctaagaactattgatctgtagtcgtcatatcctcaatccttcacgtgat 25126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 9252459 - 9252558
Alignment:
Q  64 tctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    |||| |||||| ||| |||||| | |||||||||||||||| |||||||| ||||| || |||||| ||||||| |  || ||||||||||||| |||||    
T  9252459 tctgaaaactcataggaacttggactgaattttcttcacttagtattgtcttcaaaaaccttctaataaccattca-gttaaatcttcatatccctgatc 9252557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 23506005 - 23505965
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaat 120  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  23506005 aacttgaaatgaattttcttcactttgtattgtcttcaaat 23505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 25665635 - 25665694
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattga 139  Q
    ||||| |||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||    
T  25665635 aacttcaaatgatttttcttcactttgtattgtctttaaatattttataagaaccattga 25665694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 31313777 - 31313707
Alignment:
Q  104 ttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| ||||| || || |||||| ||||||| |||| ||||||||| ||| ||||||||||||||    
T  31313777 ttgtattgtcttcaaaaaccttataagaatcattgatcttcattcttcatattcttaatccttcacgtgat 31313707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 21548923 - 21548820
Alignment:
Q  54 cattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcat 153  Q
    ||||||||||||| | ||  ||| | ||||| ||||||||||| ||||  ||||||| || ||||||   |||||||||||||| |  ||||||||||||    
T  21548923 cattctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcat 21548824  T
Q  154 atcc 157  Q
    ||||    
T  21548823 atcc 21548820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 34381909 - 34381866
Alignment:
Q  131 aaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||    
T  34381909 aaccattgatcttcaaacttcatatccttgatctttcacgtgat 34381866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 27461070 - 27461140
Alignment:
Q  104 ttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| ||||| || || |||||||||||||| ||||  ||||||||||| |||| |||| |||||    
T  27461070 ttgtattgtcttcaaaaaccttttaagaaccattgatcttcatacttcatatcctcgatctttcatgtgat 27461140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 12810489 - 12810436
Alignment:
Q  46 ttttcggtcattctttcgtctggaaactccta-gaaacttgaaatgaattttct 98  Q
    |||||| ||||||||||||||||||||||||| | ||||||| |||| ||||||    
T  12810489 ttttcgatcattctttcgtctggaaactcctagggaacttgagatgagttttct 12810436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 23521562 - 23521638
Alignment:
Q  58 ctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaacc 134  Q
    |||||||||  |||||||||| ||||||| || | ||| ||||||||| ||||||| ||||  || |||||||||||    
T  23521562 ctttcgtcttaaaactcctaggaacttgatataattttacttcactttctattgtcttcaagaaccttctaagaacc 23521638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 17860262 - 17860407
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||||||||||| | |||||||  || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  |||| || ||||    
T  17860262 tcttgcgttttcaccctgttttcaatcgttctttcgactggaaactcctaggaacttgaaatgaattttcttcactttgtattgtctacaaaaaccttct 17860361  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||   |||||| ||| ||| ||| ||||||||||||||    
T  17860362 aagaaccattgtccttcaat-ttcttatactttatccttcacgtgat 17860407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 26499710 - 26499804
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtg 172  Q
    |||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  26499710 gaaacttgaaatgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatcctcgatctttcacgtg 26499804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 30355590 - 30355473
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||||||||||||   ||||||||||||||||| |||||||| ||||||| ||||| || |||||||||| |||||| ||||||||||||||    
T  30355590 ttcttccgtctggaaactcctgtgaacttgaaatgaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcatat 30355491  T
Q  156 ccttgatccttcacgtga 173  Q
    ||| ||||||||| ||||    
T  30355490 cctcgatccttcatgtga 30355473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 15575214 - 15575080
Alignment:
Q  39 catcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattg 138  Q
    |||| |||||||| || ||||| |||||  || ||||||| |||||||||||||||||||||||||||||||||| ||||  || ||||||||||| |||    
T  15575214 catcctgttttcgatctttcttccgtctaaaatctcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacgaccttctaagaacccttg 15575115  T
Q  139 atattcaa-tcttcatatccttgatccttcacgtgat 174  Q
    || ||||| |||||  ||| |||||||||||||||||    
T  15575114 atcttcaattcttc--atcgttgatccttcacgtgat 15575080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 33638381 - 33638464
Alignment:
Q  91 aattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||| ||||||||||||| || ||||| || || |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  33638381 aattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatccttgatccttcacttgat 33638464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 24507308 - 24507401
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| |||||||||||||||||||| || ||| | |  |||||| |||||||| | ||||||||||||||| |  ||||||||||||||    
T  24507308 aacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcaatcttcatatcgtcaatccttcacgtgat 24507401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 33638325 - 33638259
Alignment:
Q  90 gaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatc 156  Q
    ||||||| ||||||||||||| || ||||| || || |||||||||||||| |||||||||||||||    
T  33638325 gaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatc 33638259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 15998769 - 15998726
Alignment:
Q  70 aactcctagaaacttgaaatgaattttcttcactttgtattgtc 113  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  15998769 aactcctaggaacttgaaatgaatttgcttcactttgtattgtc 15998726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 9396496 - 9396566
Alignment:
Q  104 ttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| ||||| | |||||||||| | ||||| |||| ||||| | ||||||||||||||||||||    
T  9396496 ttgtattgtcttcaaaaaatttctaagaatcgttgatcttcattcttcttgtccttgatccttcacgtgat 9396566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 26512642 - 26512733
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||||| |||||||||  |||  |||||||||  ||| | || || |||||||||||||| ||||  ||||||||||||||| ||||||    
T  26512642 gaaacttgagatgaatttttatcatcttgtattgtgttcacagaccttttaagaaccattgatcttcatccttcatatccttgattcttcac 26512733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 26517758 - 26517849
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||||| |||||||||  |||  |||||||||  ||| | || || |||||||||||||| ||||  ||||||||||||||| ||||||    
T  26517758 gaaacttgagatgaatttttatcatcttgtattgtgttcacagaccttttaagaaccattgatcttcatccttcatatccttgattcttcac 26517849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 12972287 - 12972341
Alignment:
Q  117 aaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgt 171  Q
    |||||| ||| ||||||||||||| ||||||||||||||| | |||| |||||||    
T  12972287 aaataccttcaaagaaccattgatcttcaatcttcatatcatcgatctttcacgt 12972341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 16439663 - 16439619
Alignment:
Q  124 ttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    ||||||||||||||||| |||| ||||||||||| ||||| ||||    
T  16439663 ttctaagaaccattgatcttcattcttcatatccctgatctttca 16439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 24618117 - 24618053
Alignment:
Q  95 ttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcctt 159  Q
    |||||||  |||||||||| | ||| |  ||||||||| ||||||| ||||||||||||||||||    
T  24618117 ttcttcaacttgtattgtctttaaagatcttctaagaatcattgatcttcaatcttcatatcctt 24618053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 26329911 - 26330028
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||  ||||||||||||||    
T  26329911 ttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattga-cttcaatcttcatat 26330009  T
Q  156 ccttgatccttcacgtgat 174  Q
    ||||||||||||| |||||    
T  26330010 ccttgatccttcatgtgat 26330028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 16622526 - 16622635
Alignment:
Q  64 tctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||| ||||| || |||||||||||| || | |||||||||||||||||| |||    
T  16622526 tctggaaactcctacgaacttgaaatgaattttcttcaatttgtattgtcttcaaa-accttctaagaaccactggtcttcaatcttcatatccttaatc 16622624  T
Q  164 cttcacgtgat 174  Q
    ||||| |||||    
T  16622625 cttcatgtgat 16622635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 25594534 - 25594651
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||| || |||||| | |||||||||||||||||||||||    
T  25594534 ttcttccgtctggaaactcctaggaacttgaa-tgaattttcttcactttgcattatctacaaaaaccttctaatatccattgatattcaatcttcatat 25594632  T
Q  156 ccttgatccttcacgtgat 174  Q
    |||||||| |||| |||||    
T  25594633 ccttgatcgttcatgtgat 25594651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 11274184 - 11274289
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||| ||||||||||||| |||| |||  |||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  11274184 aaactcctaggaacttgaaatgaaatttcatcatcttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcatatccttgatccttca 11274283  T
Q  169 cgtgat 174  Q
     |||||    
T  11274284 tgtgat 11274289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 24842026 - 24841911
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| |||||  | ||||||||||||||||  |||||||  |||||    
T  24842026 ttctgtcgtctggaaactcctaggaacatgaaatgaattttcttcattttgtgttgtcttcaaaatccttctaagaaccattga-cttcaatccacatat 24841928  T
Q  156 ccttgatccttcacgtg 172  Q
    |||||||||||||||||    
T  24841927 ccttgatccttcacgtg 24841911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 17027821 - 17027683
Alignment:
Q  35 ttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaacc 134  Q
    |||||||| | |||||| || ||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||| ||||  || ||||||||| |    
T  17027821 ttttcatccttttttcgatcgttctttcgtatggaaactcctaggaaattgaaattaattttcttcactttgtattgtcttcaagaaccttctaagaagc 17027722  T
Q  135 attgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||| |  ||||||||||||||| |||||| | ||||||||    
T  17027721 att-aacttcaatcttcatatctttgatcttgcacgtgat 17027683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 7742733 - 7742829
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||| || ||||||||||||||||||||| ||||| || ||||||||||||||||| |||| |||||||||| | ||| |||||||||||    
T  7742733 gaaacttgaaacgatttttcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcatatcttcgattcttcacgtgat 7742829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 30072365 - 30072271
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||| |||||||||||||||||||| | ||| || || ||||||||||| || ||||||||||||||| ||||||||||| |||||    
T  30072365 aacttgaaatgaaatttcttcactttgtattgtctttaaaaaccttttaagaaccattaatcttcaatcttcatatctttgatccttcatgtgat 30072271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 25680888 - 25680740
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||| |  || || ||||||||||||||||||||| |||||||||||||||| ||||||||||||  || || || ||||    
T  25680888 tcttgcgttttcgtcccgttttcgattgtttttccgtctggaaactcctagaaacctgaaatgaattttctttactttgtattgttttctaaaaccttct 25680789  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgatttc 177  Q
    |||||| ||||   || ||| ||| ||||||||||||||||| |||||||    
T  25680788 aagaactattggccttaaat-ttcttatccttgatccttcacatgatttc 25680740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 18452675 - 18452771
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||||||||||  | ||| || || |||||||||||||| |||||| |||||||| ||||||| ||| |||||    
T  18452675 gaaacttgaaatgaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaattttcatatctttgatccctcatgtgat 18452771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 22230088 - 22229960
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||| |||||| |||||||||| ||||||| |||  |||||||||||| ||||| || ||||  || ||||||||||| ||||| |||    
T  22230088 gttttcgatcgttcttccgtctgaaaactcctaggaacttgagatgtgttttcttcacttggtattatcttcaacaaccttctaagaacccttgatcttc 22229989  T
Q  145 aatcttcatatccttgatccttcacgtgat 174  Q
    ||| | |||||| |||||||||||||||||    
T  22229988 aat-tccatatctttgatccttcacgtgat 22229960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 24517650 - 24517501
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    |||||||| |||||| ||   |||||| || || |||| ||||||||||||||| ||||||||||||||||||||| |||| |||| || | ||| || |    
T  24517650 aaatcttgtgttttcctcccattttcgatcgttatttcatctggaaactcctaggaacttgaaatgaattttcttcgctttctattatcttaaaaaacct 24517551  T
Q  125 tctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    | | | |||||||| | | |||||||  ||||||||||||||||||||||    
T  24517550 tatgataaccattggtctgcaatctttgtatccttgatccttcacgtgat 24517501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 19763751 - 19763823
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttca 152  Q
    ||||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||| |||||||||||    
T  19763751 aacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 16634298 - 16634202
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||| ||||  ||||||| || ||||| || ||||||||||||||| | ||||| ||||||||  ||| |||||||||||||    
T  16634298 gaaacttgaaatgaatttttttcatcttgtattttcttcaaaaaccttctaagaaccattggtcttcaaacttcatattattgttccttcacgtgat 16634202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 22643773 - 22643855
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatcct 165  Q
    ||||||||||||||||||| ||||||||||  |||||||| || ||||||||| ||||||| |||||| ||| ||| ||||||    
T  22643773 ttgaaatgaattttcttcagtttgtattgtattcaaataccttttaagaaccactgatatttaatctttataccctcgatcct 22643855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 23157669 - 23157758
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||| ||||||| |||||||||||| | ||||| | |||||| || |||||||||||||  ||||||||| |||||||| |||||||||    
T  23157669 aactttaaatgaactttcttcactttctgttgtctttaaataccttataagaaccattgaacttcaatcttaatatcctttatccttcac 23157758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 18178351 - 18178263
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    ||||||| ||||||||| |||| |||||||| || ||||| || ||| |||||| |||| | ||||||||||||||||| |||||||||    
T  18178351 aacttgagatgaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcatatcctcgatccttca 18178263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 19331759 - 19331665
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| |||||| || ||||||| |||||||||| ||||||   |||||| || ||||||  ||||||||||||||||| |||||||||| ||||    
T  19331759 aacttcaaatgacttatcttcacattgtattgtcttcaaatgtcttctaaaaatcattgaatttcaatcttcatatcctcgatccttcacttgat 19331665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 26070723 - 26070629
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||| ||||||||||  |  ||| |||||| ||||| || || || ||||||| ||| ||||||||||||||||||||||||||| |||||    
T  26070723 aacttgaactgaattttctctaacttgcattgtcttcaaaaaccttatacgaaccatagatcttcaatcttcatatccttgatccttcatgtgat 26070629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 12339856 - 12339973
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa-tcttcata 154  Q
    |||||| ||||| |||  |||| |||| ||||| |||| ||  ||||||||||||||| ||||  || ||||||||||| ||||| ||||| |||||  |    
T  12339856 ttcttttgtctgaaaatgcctataaacatgaaacgaatgtttctcactttgtattgtcttcaacgaccttctaagaacccttgattttcaattcttc--a 12339953  T
Q  155 tccttgatccttcacgtgat 174  Q
    ||||||||||||||||||||    
T  12339954 tccttgatccttcacgtgat 12339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 17381895 - 17381998
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtc---aaatactttctaagaaccattgatattcaatcttcatatccttgatcct 165  Q
    ||||| |||| ||||||||||||| ||||||||  |||||||   |||   ||| ||  |||||||||||||| | ||||| ||||||||||||||||||    
T  17381895 aaacttctaggaacttgaaatgaactttcttcatcttgtattaatgtctcgaaaaacaatctaagaaccattggtcttcaaacttcatatccttgatcct 17381994  T
Q  166 tcac 169  Q
    ||||    
T  17381995 tcac 17381998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 24130869 - 24130798
Alignment:
Q  88 atgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcctt 159  Q
    ||||||||||  || ||||||||||  ||||| || |||||||| ||||||||||| | |||||||||||||    
T  24130869 atgaattttccccaatttgtattgtattcaaaaaccttctaagatccattgatatttattcttcatatcctt 24130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 24410830 - 24410889
Alignment:
Q  115 tcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||| || |||||||||||||| || |||||||| ||||| ||||||||| |||||    
T  24410830 tcaaataccttataagaaccattgatcttgaatcttcagatcctcgatccttcatgtgat 24410889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 20694863 - 20694801
Alignment:
Q  106 gtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||| |||||||| |||||||||||||| || ||||||||| || ||| | ||||||||    
T  20694863 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttca 20694801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 20083691 - 20083622
Alignment:
Q  105 tgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||  ||||||||||| ||| |||||||||  |||| | ||||||||||| ||| ||||||||||    
T  20083691 tgtattgttttcaaatactttataaaaaccattgaacttcatttttcatatccttaatctttcacgtgat 20083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 15695105 - 15695137
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtatt 110  Q
    ||||||||||||| |||||||||||||||||||    
T  15695105 gaaacttgaaatgcattttcttcactttgtatt 15695137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 15192505 - 15192359
Alignment:
Q  27 atcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttc 126  Q
    |||||| |||||| ||  ||||||| || ||||| |||||  |||||||||| ||||||||||||||| ||||||||||| |||||| ||||  || |||    
T  15192505 atcttgtgttttcgtcccgttttcgatcgttcttccgtctaaaaactcctaggaacttgaaatgaattgtcttcactttgaattgtcttcaacaaccttc 15192406  T
Q  127 taagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||    
T  15192405 taagaaccattggtcttcaat-ttcatatccttgatccttcacgtgat 15192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 12111138 - 12111285
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    |||||||| || ||||||  ||||||| ||||||||  || || |||||||||||||||||||||||||||||||||||||||||| || | ||| || |    
T  12111138 aaatcttgagtattcatctcgttttcgatcattcttctgtttgaaaactcctagaaacttgaaatgaattttcttcactttgtattatcttaaaaaacct 12111237  T
Q  125 tctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    | |||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  12111238 tataagaaccattga-cttcaatattcatat-cttgatccttcacgtgat 12111285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 31859766 - 31859855
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||    
T  31859766 aacttgaaataaattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcatatcctcgatccttcac 31859855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 5676501 - 5676355
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||| |  ||||| ||||| ||||||||||| |||| |||||||||||||||||  |||||||||| ||||| || ||||    
T  5676501 tcttgcgttttcgtcccgttttcgattgttcttccgtctagaaactcctagtaactcgaaatgaattttcttcatcttgtattgtcttcaaaaaccttct 5676402  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| ||||  ||||||| ||| ||||||||||||||||| |||||    
T  5676401 aagaatcatttgtattcaaacttaatatccttgatccttcatgtgat 5676355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 34864107 - 34864254
Alignment:
Q  25 aaatcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactt 124  Q
    |||||||| |||||| || |||||||| ||||| || | |||| ||||| |||| ||||| |||||||||||||||| |||||||||||  |||| || |    
T  34864107 aaatcttgtgttttc-tcctgttttcgatcatttttccatctgaaaacttctaggaactttaaatgaattttcttcattttgtattgtctacaaaaacct 34864205  T
Q  125 tctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||||||    
T  34864206 tctaagaaccattga-cttcaatctccatatctttgatccttcacgtgat 34864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 17026538 - 17026655
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| |  || |||  ||||||    
T  17026538 ttcttccgtctggaaactcctaggaacttgaaattaattttcttcactttgtattgtcttcaaaaactttttaagaaccatt-aacttaaattctcatat 17026636  T
Q  156 ccttgatccttcacgtgat 174  Q
     |||||||||||| |||||    
T  17026637 acttgatccttcatgtgat 17026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 27303078 - 27302933
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| ||  ||||||| || ||||| |||||| |||||||||| ||||| |||||||||||||||||||| || |||| ||||| || ||||    
T  27303078 tcttgtgttttcgtcccgttttcgatcgttcttccgtctgaaaactcctaggaacttaaaatgaattttcttcactttataatgtcttcaaaaaccttct 27302979  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||| || || |||||| ||||||||||||||| | ||||||||    
T  27302978 aagaacccttaatgttcaat-ttcatatccttgatcttgcacgtgat 27302933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 47024595 - 47024718
Alignment:
Q  44 tgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatatt 143  Q
    |||||||| || ||||| | |||| |||||||||| |||||||||| |||| ||||||||||||| |||  ||||| || ||||||||||||||||  ||    
T  47024595 tgttttcgatcgttcttccatctgaaaactcctaggaacttgaaataaattctcttcactttgtactgttttcaaaaaccttctaagaaccattga-ctt 47024693  T
Q  144 caatcttcatatccttgatccttca 168  Q
    |||||||||| ||||||||||||||    
T  47024694 caatcttcatgtccttgatccttca 47024718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 17187424 - 17187344
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcct 158  Q
    |||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||| |||  |||||||||||||||||    
T  17187424 gaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatcct 17187344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 1695688 - 1695805
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||||||| || |||||||||| ||||||||||||||||| |||||||||||||||| ||||  || |||||||||   || || ||||||||||||||    
T  1695688 ttctttcgtttgtaaactcctaggaacttgaaatgaattttattcactttgtattgtcttcaacaaccttctaagaatgttttat-ttcaatcttcatat 1695786  T
Q  156 ccttgatccttcacgtgat 174  Q
    | |||||| ||||| ||||    
T  1695787 cgttgatcattcacatgat 1695805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 5906576 - 5906722
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||| ||||| ||||||||||| || |||||  ||||||||| |  ||  || ||||||||||||||||| |||||||||| || ||||| || ||||    
T  5906576 tcttgcattttcgtcatgttttcgatcgttcttctgtctggaaatttttatgaatttgaaatgaattttcttaactttgtattatcttcaaaaaccttct 5906675  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| || || |||||| |||| || ||||||||| |||||    
T  5906676 aagaaccattaatcttaaatcttaatattctagatccttcatgtgat 5906722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 13064675 - 13064581
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| || ||| ||||||||| |||||| ||||||||  |||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  13064675 aacttgaaatcaaatttgttcactttgaattgtcttcaaataccctctaagaaccattgaacttcaatcgtcttatccttgatccttcacgtgat 13064581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 18898266 - 18898138
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||| |||||| ||| |||||| |||||||||||||||||||| ||||||||||||  ||||| || || ||||||||| |||  |||    
T  18898266 gttttcgatcgttcttacgtctgaaaaatcctaggaacttgaaatgaattttctttactttgtattgtattcaaaaaccttttaagaaccactga-cttc 18898168  T
Q  145 aatcttcatatccttgatccttcacgtgat 174  Q
    ||||| |||| ||| ||||||||| |||||    
T  18898167 aatctgcataccctggatccttcatgtgat 18898138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 51884886 - 51884758
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||| |||||| |||||| ||| |||||||||| ||||||||||||||||||||||  ||||  |  |||||||| || ||||| |||    
T  51884886 gttttcgatcgttcttccgtctgaaaactcataggaacttgaaattaattttcttcactttgtattgtattcaacaatcttctaagagcccttgatcttc 51884787  T
Q  145 aatcttcatatccttgatccttcacgtgat 174  Q
    ||| |||||||| ||||||||||| |||||    
T  51884786 aat-ttcatatctttgatccttcatgtgat 51884758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 10320070 - 10320173
Alignment:
Q  64 tctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||  || || || |||||| ||||||| |  |||||| |||| ||||||||||    
T  10320070 tctggaaactcctaggaacttgaaataaattttcttcactttgtattgttttcgaagaccttctaacaaccatt-aacttcaattttcacatccttgatc 10320168  T
Q  164 cttca 168  Q
    |||||    
T  10320169 cttca 10320173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 21077482 - 21077408
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcata 154  Q
    ||||||||||||||||| |||| ||||||||||| || | ||| ||||||||||||||||||||||||| |||||    
T  21077482 aacttgaaatgaattttattcaatttgtattgtcttcgattaccttctaagaaccattgatattcaatcctcata 21077408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 22119869 - 22119773
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgatttc 177  Q
    |||||||||| |||||| | |||||| ||||||| ||||| ||  |||||||||||||||| |||||| ||||||||||| ||||||||| |||||||    
T  22119869 aacttgaaattaattttgtacacttt-tattgtcctcaaaaaccctctaagaaccattgatcttcaatattcatatccttaatccttcacttgatttc 22119773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 33519276 - 33519201
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcct 158  Q
    |||||||||||||||||||  |||||||||| ||||| || |||||||||| |||||| ||||||| |||||||||    
T  33519276 ttgaaatgaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatcgtcatatcct 33519201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 7024092 - 7024178
Alignment:
Q  88 atgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||  ||||||| || ||||  |  ||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  7024092 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatctttgatccttcacgtgat 7024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 19602043 - 19601954
Alignment:
Q  84 tgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||| |||||| ||||||| ||||| || || |||||||||||| | ||||||| ||||||||| |||| ||||||||||    
T  19602043 tgaaatgaattttctccactttttattgtcttcaaaaaccttttaagaaccattg-tcttcaatcatcatatcctcgatctttcacgtgat 19601954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 23353867 - 23353777
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||||||||| | ||| || ||||   ||| |||||| || |||||||||||||||| ||||||| |||||    
T  23353867 aacttgaaatgaattttcttcactttgtattgtcttaaaagaccttct---aactattgatctttaatcttcatatccttg-tccttcatgtgat 23353777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 25315073 - 25315184
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||| ||||||||| ||| |||||||||||||||| ||| |  |||||||||| ||||  || || ||||||||||| || || ||| |||||||    
T  25315073 ttcttccgtatggaaactcttaggaacttgaaatgaatttactttatcttgtattgtcttcaacaacattttaagaaccatttatctttaat-ttcatat 25315171  T
Q  156 ccttgatccttca 168  Q
    |||||||||||||    
T  25315172 ccttgatccttca 25315184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 29437710 - 29437626
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| ||||||| ||||||||||||||||||||          ||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  29437710 aacttcaaatgaagtttcttcactttgtattgtc----------ttctaagaaccattgaacttcaatcttcatatcctcgatccttcacgtgat 29437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 20985264 - 20985317
Alignment:
Q  86 aaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattga 139  Q
    |||||| ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  20985264 aaatgagttttcttcactttgtattgtcttcaaatgttttctaagaaccattga 20985317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 9288413 - 9288365
Alignment:
Q  126 ctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  9288413 ctaagaaccattggtcttcaatcttcatatccttgatccttcacttgat 9288365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 26160004 - 26159911
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||||||  || | |||   ||||| || || |||||||||||||| |||||||||||||||||  ||||||||| ||||    
T  26160004 aacttgaaatgaattttcttcaacttat-ttgatttcaaagaccttataagaaccattgatcttcaatcttcatatcctgaatccttcacatgat 26159911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 18444458 - 18444405
Alignment:
Q  121 actttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||| ||||||||||||| |||||||||  |||| | |||||||||||||||    
T  18444458 actttccaagaaccattgatcttcaatctttgtatcatcgatccttcacgtgat 18444405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 19219079 - 19219170
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  19219079 ttgaaatgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatccttgatccttcatgtgat 19219170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 10342071 - 10341942
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||| ||||| ||||||||||| |||||||||||| ||||  ||||||||||||||| ||||| || |||||||||||| |||| |||    
T  10342071 gttttcgatcgttcttccgtctagaaactcctaggaacttgaaatgagtttttctcactttgtattgtcttcaaaaaccttctaagaaccactgatcttc 10341972  T
Q  145 aatcttcatatccttgatccttcacgtgat 174  Q
    ||||||  ||||||| ||||||||| ||||    
T  10341971 aatctttctatccttaatccttcacttgat 10341942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 25883376 - 25883267
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa-tcttcata 154  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||  || ||||||||||| ||||| ||||| |||||  |    
T  25883376 ttctttcgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaattcttc--a 25883279  T
Q  155 tccttgatcctt 166  Q
    ||||||||||||    
T  25883278 tccttgatcctt 25883267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 19542989 - 19543083
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||| | || || ||||||||| |||||    
T  19542989 aacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctttacattctcgatccttcatgtgat 19543083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 19263767 - 19263866
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaata---ctttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||||||||||| | ||| |   | ||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  19263767 gaaacttgaaatgaattttcttcactttgtattgtcttaaaaaaaaaccttctatgaaccattgatcttcaatcttcatatccttgatccttcatgtgat 19263866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 18474419 - 18474331
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||| | ||| | |||||||||    
T  18474419 aacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattcaatctttacatcttcgatccttca 18474331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 1475121 - 1475238
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa-tcttcata 154  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||||||||||| || ||||  || ||||||||||  ||||| ||||| |||||  |    
T  1475121 ttctttcgtctgaaaactcctaggaacttgaaataaattttcttcactttgtattatcttcaataaccttctaagaactcttgatcttcaactcttc--a 1475218  T
Q  155 tccttgatccttcacgtgat 174  Q
    ||||||||||||||| ||||    
T  1475219 tccttgatccttcacatgat 1475238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 18066098 - 18065987
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtc-aaatactttc 126  Q
    |||||||||||||||  ||| |||  | |||||| || ||||||||||||| || |||||||||||||||||||||||||||| || || ||| ||||||    
T  18066098 tcttgcgttttcatcccgttctcgagcgttctttggtttggaaactcctaggaagttgaaatgaattttcttcactttgtattttcttcaaaaaactttc 18065999  T
Q  127 taagaaccattg 138  Q
    ||||||||||||    
T  18065998 taagaaccattg 18065987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 16970762 - 16970617
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| ||  ||||||| || |||||| ||||||||||| |||| ||||| || | |||||||||||  ||||||| || ||||| || ||||    
T  16970762 tcttgtgttttcgtcccgttttcgatcgttcttttgtctggaaactgctaggaacttcaa-taaattttcttcatcttgtattttcttcaaaaaccttct 16970664  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||| ||| | ||||| |||||||||||||||||||||| ||||    
T  16970663 aagaaccgttggtcttcaaacttcatatccttgatccttcacatgat 16970617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 11521466 - 11521354
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||| || ||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||| || ||||  || ||||    
T  11521466 tcttgcgttttcttcccgttttcgatcgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcgctttgtattatcttcaacaaccttct 11521367  T
Q  128 aagaaccattgat 140  Q
    || |||| |||||    
T  11521366 aacaacccttgat 11521354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 8402416 - 8402511
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatac-tttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||| ||||||||||| |||| || |||||||| |||| ||||||||| | | ||||||||||||||||| |||||||||| ||||    
T  8402416 aacttgaaatgaatgttcttcactttatattttcttcaaatacctttcgaagaaccatagttcttcaatcttcatatcctcgatccttcacttgat 8402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 23908143 - 23908224
Alignment:
Q  87 aatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||||  || ||||||||||| ||||| ||||||||| |||||||||| || ||||||||||| ||||||||||||    
T  23908143 aatgaattttccccaatttgtattgtcttcaaaaactttctaaaaaccattgatcttaaatcttcatattcttgatccttca 23908224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 27415451 - 27415332
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||  |||| || |||||||||| | || | |||    
T  27415451 gttttcgatcgttctttcgtcttgaaactcctaggaagttgaaatgaattttcttcacttttta-tgtctccaaaaacattctaagaactaatggtcttc 27415353  T
Q  145 aatcttcatatccttgatcctt 166  Q
    ||| | | ||||||||||||||    
T  27415352 aat-tccttatccttgatcctt 27415332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 21828998 - 21829092
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| |||||||| ||||| |  || ||||||| ||||| || ||| | ||||||||||| ||||||||||||||||||||| ||||| |||||    
T  21828998 aacttaaaatgaatattctttaacttatattgtcttcaaagaccttcgatgaaccattgatcttcaatcttcatatccttgatacttcatgtgat 21829092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 25919345 - 25919430
Alignment:
Q  88 atgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| |||||||| ||| || ||||| |||| |||| || | ||||| ||||||||||||||||||||||||||| |||||    
T  25919345 atgaattttcgtcactttgcattatcttcaaaaactt-ctaaaaatcgttgatcttcaatcttcatatccttgatccttcatgtgat 25919430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 28422685 - 28422608
Alignment:
Q  96 tcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||| |||||||| ||||||  | ||||||  |||||||||||||||||  ||||||||||||||    
T  28422685 tcttcactttgtattgtcttcaaataccttctaa-catcattgaacttcaatcttcatatcctcaatccttcacgtgat 28422608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 11475083 - 11475002
Alignment:
Q  93 ttttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||| |||||||||||||||| |||||||  |||||||||||||| || || |||| ||||||| | ||||||||| |||||    
T  11475083 tttttttcactttgtattgtcttcaaatatcttctaagaaccatttatcttgaatcctcatatcttcgatccttcatgtgat 11475002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 33914398 - 33914526
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattc 144  Q
    ||||||| || ||||| ||| ||||||||| ||  | | |||||||||||||| | |||||| ||| || |||||    |||| | ||||||||| ||||    
T  33914398 gttttcgatcgttcttccgtatggaaactcataagagcctgaaatgaattttccttactttgaattatcttcaaaattcttcttaaaaccattga-attc 33914496  T
Q  145 aatcttcatatccttgatccttcacgtgat 174  Q
    || |||||||||||||||||||||||||||    
T  33914497 aaccttcatatccttgatccttcacgtgat 33914526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 30493132 - 30493219
Alignment:
Q  82 cttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    |||| ||||||||||||||||||| ||| ||| ||||||   ||||||||||| || || || |||||||||||| | ||||||||||    
T  30493132 cttgcaatgaattttcttcactttatatcgtcttcaaatgtcttctaagaaccgttaatctttaatcttcatatcttcgatccttcac 30493219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 21018133 - 21018036
Alignment:
Q  73 tcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgt 171  Q
    |||||| |||||||||||||||| ||||| |||||||| || ||||| |  || ||  |||||||| | |||||| |||||||| ||||||||||||||    
T  21018133 tcctaggaacttgaaatgaatttccttcattttgtattatcttcaaaaaagttatagaaaccattggtcttcaat-ttcatatcattgatccttcacgt 21018036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 26418961 - 26418881
Alignment:
Q  88 atgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    ||||||||||  || |||||||| || | ||| || |||||||||||||  || || ||||||||||||||||||||||||    
T  26418961 atgaattttccccaatttgtattttctttaaaaaccttctaagaaccatcaatctttaatcttcatatccttgatccttca 26418881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 5632408 - 5632482
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    |||||||||||||||||||||| ||| |||| || |||||||| || |||||||| ||| | ||||||||| ||||    
T  5632408 aacttgaaatgaattttcttcaatttttattatcttcaaataccttataagaaccgttg-tcttcaatctttatat 5632482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 25188960 - 25188919
Alignment:
Q  127 taagaaccattgatattcaatcttcata-tccttgatccttc 167  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  25188960 taagaaccattgatattcattcttcatattccttgatccttc 25188919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 13911462 - 13911419
Alignment:
Q  124 ttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||    
T  13911462 ttctaagaaccattta-atttaatcttcatatccttgatccttca 13911419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 26809 - 26914
Alignment:
Q  69 aaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||  ||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  26809 aaactcctatgaacttgaaacgaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcatatccttgatctttca 26908  T
Q  169 cgtgat 174  Q
    ||||||    
T  26909 cgtgat 26914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 21664 - 21559
Alignment:
Q  63 gtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgat 162  Q
    |||| |||||||||| ||||||||||||||| ||||| ||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||| |||||    
T  21664 gtctagaaactcctataaacttgaaatgaatattcttaactttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcatatcattgat 21565  T
Q  163 ccttca 168  Q
    ||||||    
T  21564 ccttca 21559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 6456 - 6351
Alignment:
Q  68 gaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttc 167  Q
    ||||||||||| |||||||| ||| |||||||||||||||||| || ||||| |  ||||| ||||||||| | |||||| |||||||||||||||||||    
T  6456 gaaactcctaggaacttgaattgatttttcttcactttgtattttcttcaaaaatcttctaggaaccattggtcttcaat-ttcatatccttgatccttc 6358  T
Q  168 acgtgat 174  Q
    |||||||    
T  6357 acgtgat 6351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 16054595 - 16054450
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||  || ||||    
T  16054595 tcttgcgttttcttcccgttttcgatcgttcttttgtctggaaactcctaggaacttgaaatgaattttcttcactttgtattttcttcaacaaccttct 16054496  T
Q  128 aagaaccattgatattcaatcttcat-atccttgatccttcacgtgat 174  Q
    ||||||| ||||| |||||  ||||| | |||||||||||||| ||||    
T  16054495 aagaacccttgatcttcaa--ttcatcaaccttgatccttcacatgat 16054450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 11310070 - 11310214
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| |   ||||||| || ||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||  ||||| || ||||    
T  11310070 tcttgcgttttccttccgttttcgatcgttcttccgtctagaaactcctaggaacttgaaat-aattttcttcactttgtattgttttcaaaaaccttct 11310168  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| ||||||  || ||||||||||||||||||||||||| ||||    
T  11310169 aagaatcattga-cttaaatcttcatatccttgatccttcacatgat 11310214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 16052118 - 16052236
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||| |||||||| || |||||||||||||||||||||| ||||||||||| ||||| || ||||||||| ||||| | || |||||||||||    
T  16052118 ttcttccgtctagaaactccaaggaacttgaaatgaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattggtctttaatcttcatat 16052217  T
Q  156 ccttgatccttcacgtgat 174  Q
    |||| |||||||| |||||    
T  16052218 cctttatccttcatgtgat 16052236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 28902390 - 28902245
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    |||||||||||| ||  ||||||  || |||||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| ||||  || ||||    
T  28902390 tcttgcgttttcgtcccgttttcaatcgttctttcgtctgaaaactcctaggaacttaaaatgaattttattcactttgtattgtcttcaataaccttct 28902291  T
Q  128 aagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||| | || ||| || ||||| |||||||||||||||||    
T  28902290 aagaaccattggtctttaat-ttaatatcattgatccttcacgtgat 28902245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 28901191 - 28901302
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||| | || || ||||||||||||| |||||||||||||||    
T  28901191 ttcttccgtctagaaactcctaggagcttgaaatgaattttcttcactttgtattgtcttcagaaaccttataagaaccattga-attcaatcttcatat 28901289  T
Q  156 ccttgatccttca 168  Q
    | ||||| |||||    
T  28901290 cattgattcttca 28901302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 30850965 - 30851054
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    |||||||||| |||||||||||||||||||| |  ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30850965 aacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcatatccttgatccttcac 30851054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 13081776 - 13081867
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaat 147  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||| ||||| ||||||    
T  13081776 ttcttttgtctagaaactcatagaaacttgaaatgaattttcttcattttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 13081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 29292016 - 29291925
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||| |||||||| | ||||| ||||| || ||||||||||||||||| |||||| |||||||||| ||| |||||||||||    
T  29292016 ttgaaatgaatttttttcactttctgttgtcttcaaagaccttctaagaaccattgatcttcaatattcatatcctcgattcttcacgtgat 29291925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 24120497 - 24120379
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||  || |||| || || || || ||||||||| ||||| |||||||  || ||||    
T  24120497 ttcttccgtctggaaattcctaggaacttgaaatgaattttcttcatcttttattatcttcgaaaaccttctaagaaacattggtattcaaaattaatat 24120398  T
Q  156 ccttgatccttcacgtgat 174  Q
    |||||||||||||| ||||    
T  24120397 ccttgatccttcacatgat 24120379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 24696867 - 24696745
Alignment:
Q  45 gttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttc-actttgtattgtcgtcaaatactttctaagaaccattgatatt 143  Q
    ||||||| || || || ||||| |||| |||||||||||||||||||||||| ||  |||||||||| || ||||| || |||||||||| | || | ||    
T  24696867 gttttcgatcgtttttccgtctagaaaatcctagaaacttgaaatgaatttttttttactttgtattttcttcaaaaaccttctaagaacaagtggtctt 24696768  T
Q  144 caatcttcatatccttgatcctt 166  Q
    |||||||||||||||||||||||    
T  24696767 caatcttcatatccttgatcctt 24696745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 28291966 - 28292060
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||  |||||||||| ||||||||||| ||||| || |||||||||||||| || |||||||||||||||||  |||||||| |||||    
T  28291966 aacttgaaatttattttcttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcatatcctcaatccttcatgtgat 28292060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 14976953 - 14977068
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| |||||||||||| |||||| |||||||| ||||||| |||||||||||| || ||||| ||   |||| || ||||||| |||||||||||| |    
T  14976953 ttcttccgtctggaaacttctagaagcttgaaattaattttcatcactttgtattatcttcaaaaac---ctaaaaatcattgattttcaatcttcatgt 14977049  T
Q  156 ccttgatccttcacgtgat 174  Q
    |||||||| |||| |||||    
T  14977050 ccttgatctttcatgtgat 14977068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 22894387 - 22894490
Alignment:
Q  70 aactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||| | ||||| ||| |||||||||||||||||||||||| ||||| ||  ||||||||| ||||| |||||||||| ||||| |||||||||||     
T  22894387 aactccttggaacttcaaaagaattttcttcactttgtattgtcttcaaaaaccatctaagaacaattga-attcaatctttatatcattgatccttcat 22894485  T
Q  170 gtgat 174  Q
    |||||    
T  22894486 gtgat 22894490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 32239539 - 32239443
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||| ||||||| | ||  || || ||| |||||||||  |||||||||||||||||| |||||||| |||||    
T  32239539 gaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaaaccattgaacttcaatcttcatatcctttatccttcatgtgat 32239443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 30544011 - 30543916
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaata-ctttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||| ||||||| | ||||| ||||  ||||||||||||  |||||||||||||||||  |||||||| |||||    
T  30544011 aacttgaaatgaattttcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcatatcctcaatccttcatgtgat 30543916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 11437669 - 11437583
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatcctt 166  Q
    ||||| ||||||||| |||||||| ||||||||| ||||||   ||||||||||||||||  |||||| ||||||||||||||||||    
T  11437669 aacttcaaatgaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcatatccttgatcctt 11437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 6888059 - 6888152
Alignment:
Q  81 acttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||| | ||||||||||  |||||||||| ||||| || || |||||||||||||| ||||||||||||||||| ||| || ||||||||    
T  6888059 acttgaaacggattttcttcaacttgtattgtcttcaaagacattttaagaaccattgatcttcaatcttcatatcctcgatactgcacgtgat 6888152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 13583398 - 13583479
Alignment:
Q  93 ttttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||| |||||||||||||||| |||||||  ||||||||||||||||  ||||||| ||||||||| |||||||||| ||||    
T  13583398 tttttttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatcctcgatccttcacttgat 13583479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 28859119 - 28859198
Alignment:
Q  95 ttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||| ||||||| ||||| ||  |||||||||||||||| || |||||| ||||||||||||||||| |||||    
T  28859119 ttcttcactttttattgtcttcaaaaaccatctaagaaccattgatctttaatcttgatatccttgatccttcatgtgat 28859198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 5154007 - 5153918
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||||||||||||| ||||  || ||||||| ||||| || ||| || || ||||||| ||||||||||||||||| ||||||||||    
T  5154007 aacttgaaatgaattttattcatgttatattgtcttcaaaaaccttccaataatcattgatcttcaatcttcatatcctcgatccttcac 5153918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 5569979 - 5570083
Alignment:
Q  54 cattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcat 153  Q
    ||||||| |||||| |||||||||  || |||||||||||||||||||  |||||||||| | ||| |  ||||||||||||||| | || || ||||||    
T  5569979 cattcttccgtctgaaaactcctatgaagttgaaatgaattttcttcatcttgtattgtctttaaaaagcttctaagaaccattggtctttaaacttcat 5570078  T
Q  154 atcct 158  Q
    |||||    
T  5570079 atcct 5570083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 31436718 - 31436644
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcct 158  Q
    |||||||||| |||||| |||||||||||||||| ||||||||   |||||||||||||||  ||||||||||||||||    
T  31436718 aacttgaaat-aatttttttcactttgtattgtcttcaaatac---ctaagaaccattgatcgtcaatcttcatatcct 31436644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 12956731 - 12956636
Alignment:
Q  80 aacttgaaatgaattt-tcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||| ||||||||||||||| || | ||| || ||| || ||| |||||| |||| |||||||||||||||| ||||| |||||    
T  12956731 aacttgaaatgaatttctcttcactttgtattatcttaaaaaaccttccaaaaacaattgatcttcagtcttcatatccttgattcttcatgtgat 12956636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 14424684 - 14424754
Alignment:
Q  86 aaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatc 156  Q
    ||||||||||||||||| ||| |||||  ||||| || ||||||||||||||||| |||||||||| ||||    
T  14424684 aaatgaattttcttcacattgaattgtgttcaaaaaccttctaagaaccattgatcttcaatcttcttatc 14424754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 23408095 - 23408181
Alignment:
Q  53 tcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattga 139  Q
    ||||||||||||   |||||||||||||| |||||||||||||||| || |||| || ||| ||||| |  ||||||||| ||||||    
T  23408095 tcattctttcgttgagaaactcctagaaaattgaaatgaattttctgcattttgcatagtcttcaaaaatcttctaagaatcattga 23408181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 27097667 - 27097740
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    |||||||| |||||||||||||  |||||||||| ||||| || |||||||||| |||   |||||||||||||||    
T  27097667 aacttgaattgaattttcttcaacttgtattgtcttcaaagaccttctaagaactatt--cattcaatcttcatat 27097740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 27417104 - 27417222
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatat 155  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||  ||||| || |||| |||||||||| | |||||  |||||||    
T  27417104 ttcttccgtctggaaactccttggaacttgaaatgaattttcttcactttgtattgttttcaaaaaccttcttagaaccattggtcttcaacattcatat 27417203  T
Q  156 ccttgatccttcacgtgat 174  Q
    | ||||||||||| |||||    
T  27417204 cattgatccttcatgtgat 27417222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 16593564 - 16593681
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| | || |||||| ||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||  || ||||    
T  16593564 tcttgtgttttctttatattttcgatcattatttcatctcgaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttct 16593663  T
Q  128 aagaaccattgatattca 145  Q
    ||||||| ||||| ||||    
T  16593664 aagaacccttgatcttca 16593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 17415029 - 17415122
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||| | ||||| |||||||  | ||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  17415029 aacttgaaatgaattttcttcactttttgttgtcttcaaataactcctaagaaccattgat-ttcaatcttcatgtcctcgatccttcacgtgat 17415122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 30999020 - 30998927
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||| |||||||||||||| ||||  || ||||||||||| ||||| |||||| | ||||||||||||||||||| ||||    
T  30999020 aacttgaaatgaattttctccactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat-tacatatccttgatccttcacttgat 30998927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 24188217 - 24188125
Alignment:
Q  81 acttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||| ||||||| ||||||||||||||||||| ||||| ||||||||||| | |||| | |||||||||||||| |||||||||||| |||||    
T  24188217 acttggaatgaatcttcttcactttgtattgtcttcaaaaactttctaagatctattg-tcttcaatcttcatattcttgatccttcatgtgat 24188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 14921910 - 14921998
Alignment:
Q  86 aaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||| |||||||||||||||||||||  || |||| ||||||||||||||||  ||||||||||||||||| ||| |||||| ||||    
T  14921910 aaatgatttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcatatcctcgattcttcacatgat 14921998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 35708104 - 35707959
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| || |||||||| || |||||||||||| ||||||||   |||||||||| |||||| |||| ||||||||||| ||||  || ||||    
T  35708104 tcttgtgttttcttcctgttttcgatcgttctttcgtctgaaaactcctgagaacttgaaataaattttgttcattttgtattgtcttcaacaaccttct 35708005  T
Q  128 aagaaccattgatattcaa-tcttcatatccttgatccttcacgtgat 174  Q
    ||||| | ||||||||||| |||||  ||||||||| |||||| ||||    
T  35708004 aagaaaccttgatattcaattcttc--atccttgatacttcacatgat 35707959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 1732800 - 1732706
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| |||||| |||| ||||||||| | |||||||  ||||||||| ||||||| |||||||||||||| ||| |||||||| |||||    
T  1732800 aacttgaaataaattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcatattcttaatccttcatgtgat 1732706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 18818951 - 18818873
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatcct 158  Q
    |||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||| || |||| | ||||||||||    
T  18818951 aacttgaattgaattttcttcactttgtattgtcttcaaagaccttctaagaaccattaatcttcagttttcatatcct 18818873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 22525683 - 22525744
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattga 139  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  22525683 gaaacttgaaataaattttcttcactttgtgttgtcttcaaataccttctaagaaccattga 22525744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 21505007 - 21505098
Alignment:
Q  83 ttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||  |||||||||| ||||| || |||| |||||||||| | ||||| ||||| |||||||||| |||| |||||    
T  21505007 ttgaaatgaattttcttcaacttgtattgtcttcaaaaaccttctcagaaccattggtcttcaaacttcacatccttgatctttcatgtgat 21505098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 25474310 - 25474227
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattga 139  Q
    ||||||| |||||||||| |||| ||| |||||||||||||||||||||| ||||||| ||||  || ||||||||||| ||||    
T  25474310 ttctttcatctggaaactactaggaacctgaaatgaattttcttcactttatattgtcttcaacaaccttctaagaacccttga 25474227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 15829432 - 15829350
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtatt 110  Q
    |||||||||||||||||||||||  |  ||||| | ||  |||||||||||||| ||||||||||||||||| ||||||||||    
T  15829432 tcttgcgttttcatcatgttttcaattgttcttccatcgcgaaactcctagaaatttgaaatgaattttctttactttgtatt 15829350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 18236168 - 18236262
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    ||||||||||||||||||||||  |||||||||| ||||  || |||||||||||||||   ||||||||||||||   |||||||||| |||||    
T  18236168 aacttgaaatgaattttcttcatcttgtattgtcttcaacaaccttctaagaaccattggccttcaatcttcatatttgtgatccttcatgtgat 18236262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 19541285 - 19541192
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||  ||||| ||||||||||||| | || ||| || |||||||||||| | ||||||||||||||||| |||||||||| ||||    
T  19541285 aacttgaaatgaagattcttaactttgtattgtctttaa-taccttataagaaccattggtcttcaatcttcatatcctcgatccttcacttgat 19541192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 17152379 - 17152314
Alignment:
Q  104 ttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||||| || ||||| || |||||||||||||| ||||||| |||||||||||||||||||||||    
T  17152379 ttgtattatcttcaaaaaccttctaagaaccattcatattcattcttcatatccttgatccttcac 17152314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 34063706 - 34063795
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcac 169  Q
    ||||| |||||||||||||||||||||||||||| ||||||   |||||| ||||||  | ||| |||||||||||| | ||||||||||    
T  34063706 aacttcaaatgaattttcttcactttgtattgtcttcaaatgtcttctaataaccatcaaaattaaatcttcatatcgtcgatccttcac 34063795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 19949366 - 19949417
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgt 107  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||||    
T  19949366 ttctttcatctgaaaactcctaggaacttgaaatgaattttcttcactttgt 19949417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 31262241 - 31262163
Alignment:
Q  85 gaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    |||||||||||||||||  || ||||||| ||||| || | |||||||||||| || ||||||||||||||||| ||||    
T  31262241 gaaatgaattttcttcaacttatattgtcttcaaagacctactaagaaccattaatcttcaatcttcatatcctcgatc 31262163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 31274207 - 31274131
Alignment:
Q  78 gaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcata 154  Q
    |||||||| |||||||||||||||  || ||||||| ||||| || |||||||||||||| || |||||| ||||||    
T  31274207 gaaacttggaatgaattttcttcaacttatattgtcttcaaagaccttctaagaaccattaatcttcaattttcata 31274131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 1733364 - 1733247
Alignment:
Q  56 ttctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattca-atcttcata 154  Q
    ||||| |||||| |||||||||| ||  | ||||||||||| ||||||||||||| || ||||  || ||||||||||  ||||| ||||  |||||  |    
T  1733364 ttcttccgtctgaaaactcctaggaatctaaaatgaattttattcactttgtattatcttcaacaacattctaagaactcttgatcttcatttcttc--a 1733267  T
Q  155 tccttgatccttcacgtgat 174  Q
    ||||| ||||||||||||||    
T  1733266 tccttaatccttcacgtgat 1733247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 32619863 - 32619792
Alignment:
Q  91 aattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    |||||| |||||||||||||||| ||||| || |||| |||||  ||||| |||| |||||||||||||||||    
T  32619863 aattttattcactttgtattgtcttcaaaaaccttcttagaacttttgat-ttcattcttcatatccttgatc 32619792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 24047582 - 24047543
Alignment:
Q  129 agaaccattgatattcaatcttcatatccttgatccttca 168  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  24047582 agaaccattgatcttcattcttcatatccttgatccttca 24047543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 22463 - 22572
Alignment:
Q  64 tctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatc 163  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||| | ||| || ||||| ||||||||||  |||| ||||||||||||||||     
T  22463 tctggaaaatcctaggaacttgaaatgaattttcttcaccttgtattgtcttaaaaaaccttctatgaaccattga-cttcattcttcatatccttgatt 22561  T
Q  164 cttcacgtgat 174  Q
    |||||||||||    
T  22562 cttcacgtgat 22572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 228052 - 228145
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||| ||||||  || |||||||||||||||    
T  228052 aacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaaccattg-tcttcaatattcatacactcgatccttcacgtgat 228145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 11564 - 11635
Alignment:
Q  81 acttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttca 152  Q
    ||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||    
T  11564 acttgaaatgaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatcttca 11635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 7920 - 7810
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttct 127  Q
    ||||| |||||| ||  ||||||| |||||||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||| ||||  || ||||    
T  7920 tcttgtgttttcgtccagttttcgatcattcttccgtctgaaaactcctaggaacttgaaatgaattttcttgactttgtactgtcttcaacaaccttct 7821  T
Q  128 aagaaccattg 138  Q
    |||||||||||    
T  7820 aagaaccattg 7810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 11631 - 11746
Alignment:
Q  47 tttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaa 146  Q
    ||||| || ||||| |||||||||| |||||| |||| |||||||| |||| |||  ||| |||| | ||||| || |||||||||| ||| |||||||     
T  11631 tttcgatcgttcttccgtctggaaattcctaggaactcgaaatgaactttcgtcatcttgcattgacttcaaaaaccttctaagaactatttatattcat 11730  T
Q  147 tcttcatatccttgat 162  Q
    |||| |||||||||||    
T  11731 tcttaatatccttgat 11746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 8522 - 8613
Alignment:
Q  28 tcttgcgttttcatcatgttttcggtcattctttcgtctggaaactcctagaaacttgaaatgaattttcttcactttgtattgtcgtcaaa 119  Q
    |||||||||||| ||  ||||||| || ||||| ||| || ||| |||||| |||| ||||||||||| |||||  |||||||||| |||||    
T  8522 tcttgcgttttcgtcccgttttcgatcgttcttccgtttgaaaattcctaggaactcgaaatgaatttccttcatcttgtattgtcttcaaa 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 2057 - 1964
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| |||||||||||||||||||| || ||| | |  |||||| |||||||| | ||||||||||||||| |  ||||||||||||||    
T  2057 aacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcaatcttcatatcgtcaatccttcacgtgat 1964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 2036 - 1978
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattg 138  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||  | ||||||||||||    
T  2036 aacttgaaatgaattttctttactttgtattgtcttcaaaaaccatataagaaccattg 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 1701 - 1751
Alignment:
Q  86 aaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccat 136  Q
    |||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  1701 aaatgaattttcttcactttgtattgtcatcaaatgtattctaagaaccat 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 12493 - 12400
Alignment:
Q  80 aacttgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattcaatcttcatatccttgatccttcacgtgat 174  Q
    |||||||||| |||||||||||||||||||| || ||| | |  |||||| |||||||| | ||| ||||||||||| |  ||||||||||||||    
T  12493 aacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg-tcttcgatcttcatatcgtcaatccttcacgtgat 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 2851 - 2817
Alignment:
Q  86 aaatgaattttcttcactttgtattgtcgtcaaat 120  Q
    |||||||||||||||||||||||||||| ||||||    
T  2851 aaatgaattttcttcactttgtattgtcatcaaat 2817  T

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Target: scaffold0185 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 2745 - 2684
Alignment:
Q  84 tgaaatgaattttcttcactttgtattgtcgtcaaatactttctaagaaccattgatattca 145  Q
    |||||||| ||||||||||| ||||||||| ||||||   || |||||||||||||| ||||    
T  2745 tgaaatgagttttcttcactctgtattgtcttcaaatgtcttataagaaccattgatcttca 2684  T

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