View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_37 (Length: 218)
Name: NF12578_low_37
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 34485142 - 34484955
Alignment:
| Q |
17 |
acaataaaccttacttcgataaatctgaataat-cataatgttctaatgcttgatgaaccatatttcacatttgcaatactttgacatgcctcagcatta |
115 |
Q |
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| T |
34485142 |
acaataaaccttacttcgataaatttgaataattcataatgttctaatgcttgatgaaccatatttcacatttgcaatactttgacatgcctcagcatta |
34485043 |
T |
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| Q |
116 |
tccctttaatttgcaacatgtaaagacaaacacattcttcatcctgctatccaatgttgacatttccaccttcaatagttgaagttga |
203 |
Q |
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| T |
34485042 |
tccctttaatttgcaacatgtaaagacaaacacattcttcatcctgctatccaatgttgacatttccactttcaatagttgaagttga |
34484955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 34480479 - 34480357
Alignment:
| Q |
83 |
acatttgcaatactttgacatgcctcagcattatccctttaa--tttgcaacatgtaaagacaaacacattcttcatcctgctatccaatgttgacattt |
180 |
Q |
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| T |
34480479 |
acatttgcaatactttgacatgcttcaacattaaaactattccctttgcaacatgtaaacacaaacatattcttcatcctgctttccaatgttgacattt |
34480380 |
T |
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| Q |
181 |
ccaccttcaatagttgaagttga |
203 |
Q |
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| T |
34480379 |
ctgccttcactagttgaagttga |
34480357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 34481985 - 34481926
Alignment:
| Q |
98 |
tgacatgcctcagcattatccctttaatttgcaacatgtaaagacaaacacattcttcat |
157 |
Q |
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| T |
34481985 |
tgacatgcctcagcattatccccttaatttgcaacatgtaaagactaacacattcttcat |
34481926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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