View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_38 (Length: 217)
Name: NF12578_low_38
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 27334381 - 27334562
Alignment:
| Q |
21 |
gtagtagagcaggattagtggaaaaaggaaatcagatatttgaatctatgattaatgaacatgggattgtaccaattcaagatcattacacttgcatgat |
120 |
Q |
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| T |
27334381 |
gtagtagagcaggattagtggaaaaaggaaatcagatatttgaatctatgattaatgaacatgggattgtaccaattcaagatcattacacttgcatgat |
27334480 |
T |
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| Q |
121 |
tgatctcttcagccgagctgggaggatagaagaagcaaggaattttataaacaagatgcctttcagtcctgatgcaattagt |
202 |
Q |
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| T |
27334481 |
tgatctcttcagccgagctgggaggatagaagaagcaaggaattttataaacaagatgcctttcagtcctgatgcaattagt |
27334562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 29179392 - 29179211
Alignment:
| Q |
21 |
gtagtagagcaggattagtggaaaaaggaaatcagatatttgaatctatgattaatgaacatgggattgtaccaattcaagatcattacacttgcatgat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29179392 |
gtagtagagcaggattagtggaaaaaggaaatcagatatttgaatctatgattaatgaacatgggattgtaccaattcaagatcattacacttgcatgat |
29179293 |
T |
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| Q |
121 |
tgatctcttcagccgagctgggaggatagaagaagcaaggaattttataaacaagatgcctttcagtcctgatgcaattagt |
202 |
Q |
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| T |
29179292 |
tgatctcttcagccgagctgggaggatagaagaagcaaggaattttataaacaagatgcctttcagtcctgatgcaattagt |
29179211 |
T |
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