View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_5 (Length: 464)
Name: NF12578_low_5
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 28729415 - 28728984
Alignment:
| Q |
19 |
agctctccattttccagtcagaatttcagcaaaaggtttgaacttaatgttatcacatgagattgtatgcatattttttatcaccaagagtggttccact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28729415 |
agctctccattttccagtcagaatttcagcaaaaggtttgaacttgatgttatcacatgagattgtatgcatattttt-atcaccaagagtggttccact |
28729317 |
T |
|
| Q |
119 |
ggtacattttagtttgtacttgtgataagaagttttgaaagttaagtcattgtttattacattaaagttactcaaagtatatgtagtattctcttccaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
28729316 |
ggtacattttagtttgtacttgtgataagaagttttgaaagctaagtcattgtttagtacattaaagttactcaaagtatatgtagtattctcttcctga |
28729217 |
T |
|
| Q |
219 |
atcttgtcatagacagctttgtaaccagagggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaataca |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28729216 |
atcttgtcatagacagctttgtaaccagtaggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaaaaca |
28729117 |
T |
|
| Q |
319 |
aaacaacaaagtttaagttaatattcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28729116 |
aaacaacaaagtttaagttaatattcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatcc |
28729017 |
T |
|
| Q |
419 |
ttgaccttaacagttagtttccaaaagtccttc |
451 |
Q |
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| T |
28729016 |
ttgaccttaacagttagtttccaaaagtccttc |
28728984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 28720022 - 28719588
Alignment:
| Q |
19 |
agctctccattttccagtcagaatttcagcaaaaggtttgaacttaatgttatcacatgagattgtatgcatattttttatcaccaagagtggttccact |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28720022 |
agctctccattttccagtcagaatttcagcaaaaggtttgaacttgatgttatcacatgagattgtatgcatattttt-atcaccaagagtggttccact |
28719924 |
T |
|
| Q |
119 |
ggtacattttagtttgtacttgtgataagaagttttgaaagttaagtcatt---gtttattacattaaagttactcaaagtatatgtagtattctcttcc |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28719923 |
ggtacattttagtttgtacttgtgatcagaagttttgaaagctaagtcattattgtttagtacattaaagttactcaaagtatatgtagtattctcttcc |
28719824 |
T |
|
| Q |
216 |
agaatcttgtcatagacagctttgtaaccagagggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaat |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28719823 |
agaatcttgtcatagacagctttgtaaccagtgggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaaa |
28719724 |
T |
|
| Q |
316 |
acaaaacaacaaagtttaagttaatattcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccattta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28719723 |
acaaaacaacaaagtttaagttaatattcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccattta |
28719624 |
T |
|
| Q |
416 |
tctttgaccttaacagttagtttccaaaagtccttc |
451 |
Q |
| |
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| ||||||||||||| ||||||||| ||||||||| |
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| T |
28719623 |
ttcttgaccttaacagctagtttccataagtccttc |
28719588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 13057928 - 13057847
Alignment:
| Q |
369 |
tcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttccaaaagtccttc |
451 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
13057928 |
tcaccagctccaagtgttccttgccatccttcacaacagtccatttatc-ttgaccttcacagctagtttccaaaagtccttc |
13057847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 13040506 - 13040424
Alignment:
| Q |
369 |
tcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttccaaaagtccttc |
451 |
Q |
| |
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|||||| |||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
13040506 |
tcaccaactccaagtgttccttgccatccttcacaacggtccatttatccttgaccttcacaactagtttccaaaagtccttc |
13040424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 27134436 - 27134527
Alignment:
| Q |
353 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttccaaaa |
444 |
Q |
| |
|
|||||| |||||||||| | || ||||| ||||||||||||||| || ||||||||||| || |||||||| ||||||||| |||||||| |
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| T |
27134436 |
accttaacatcaacaataatcatctccagatgttccttgccatccttaacaacagtccacttgtctttgactctaacagttaacttccaaaa |
27134527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 444
Target Start/End: Complemental strand, 26406297 - 26406206
Alignment:
| Q |
353 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttccaaaa |
444 |
Q |
| |
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|||||| |||||||||| | || ||||| ||||||||||||||| || ||||||||||| || |||||||| ||||||||| |||||||| |
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| T |
26406297 |
accttagcatcaacaataatcatctccagatgttccttgccatccttaacaacagtccacttgtctttgactctaacagttaacttccaaaa |
26406206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 10234630 - 10234700
Alignment:
| Q |
353 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgac |
423 |
Q |
| |
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|||||| |||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||| |
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| T |
10234630 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgac |
10234700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 32253794 - 32253709
Alignment:
| Q |
362 |
tcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttccaaaagtc |
447 |
Q |
| |
|
|||||||| |||| |||| ||| ||||| |||||||| |||||||||||||| ||||| || || |||| ||||||||| ||||| |
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| T |
32253794 |
tcaacaattaccaattccagatgctcctttccatcttttacaacagtccatttgtctttaactttcacaggtagtttccagaagtc |
32253709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 8337352 - 8337422
Alignment:
| Q |
353 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgac |
423 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| || ||||| ||||| | ||||||||||||||||| |
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|
| T |
8337352 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactgctgtccatttatctttgac |
8337422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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