View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_6 (Length: 442)
Name: NF12578_low_6
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 41463879 - 41463462
Alignment:
| Q |
18 |
gtttgccacatgaatgaaccactaatccgattcccgttccatatagaagaaaaacaaacaaatacatgtggataccctgggttcaaagtattatgcaatg |
117 |
Q |
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| T |
41463879 |
gtttgccacatgaatgaaccactaatccgattcccgttccatatagaagaaaaacaaacaaatacatgtggataccctgggttcaaagtattatgcaatg |
41463780 |
T |
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| Q |
118 |
aaagtgnnnnnnnccaaacactccttaatctaccttatatggaaaatcttagtatccaaaaaataaactatgccaaacaagaactttttgtgaatgatcc |
217 |
Q |
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| T |
41463779 |
aaagtgaaaaaaatcaaacactccttaatctaccttatatggaaaatcttagtatccaaaaaataaactatgccaaacaagaactttttgtgaatgatcc |
41463680 |
T |
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| Q |
218 |
caataactgtctcccaaaacaacttctctcactcaacctctctacctctccttttgatgccgtttactatcaacaatttaccttttttaactgttcatac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41463679 |
caataactgtctcccaaaacaacttctctcactcaacctctctacctctccttttgatgccgtttactatcaacaatttaccttttttaactgttcatac |
41463580 |
T |
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| Q |
318 |
aacttggaataccttacctctaggtacaaaccaatagcttgtcttagtgattactccaagtacaacgtttttgcaacaccttcacttactgcgtttgtgc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41463579 |
aacttggaataccttacctctaggtacaaaccaatagcttgtcttagtgattactccaagtacaacgtttttgcaacaccttcacttactgtgtttgtgc |
41463480 |
T |
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| Q |
418 |
acttgtcgtctgtctgtg |
435 |
Q |
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| T |
41463479 |
acttgtcgtctgtctgtg |
41463462 |
T |
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