View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_low_8 (Length: 414)

Name: NF12578_low_8
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_low_8
NF12578_low_8
[»] chr1 (9 HSPs)
chr1 (1-396)||(29444341-29444736)
chr1 (7-246)||(29421893-29422139)
chr1 (214-302)||(29454439-29454527)
chr1 (10-69)||(29474635-29474694)
chr1 (304-396)||(29422299-29422392)
chr1 (167-252)||(29474398-29474483)
chr1 (7-69)||(29454711-29454770)
chr1 (77-131)||(29474485-29474538)
chr1 (204-252)||(29473609-29473657)
[»] chr2 (3 HSPs)
chr2 (87-298)||(11988623-11988837)
chr2 (127-296)||(12007467-12007635)
chr2 (115-295)||(12019961-12020138)


Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 29444736 - 29444341
Alignment:
Q  1 attttcatgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444736 attttcatgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaa 29444637  T
Q  101 tcacaaagataataaaaagtttcaacacttttgatcaccataacatataaaccattttcaatacttttacacctaaacagacatatatgcaatttttctt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444636 tcacaaagataataaaaagtttcaacagttttgatcaccataacatataaaccattttcaatacttttacacctaaacagacatatatgcaatttttctt 29444537  T
Q  201 tgaattacttatagcaggatcctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtcatgtagatttggtatctgacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444536 tgaattacttatagcaggatcctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtcatgtagatttggtatctgacc 29444437  T
Q  301 aaatgatctcacaccattcaagaagagatataaaaccaggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatcc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444436 aaatgatctcacaccattcaagaagagatataaaaccaggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatcc 29444341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 29421893 - 29422139
Alignment:
Q  7 atgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaatcacaa 106  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  29421893 atgggccacgcaattagcattcaagtaggttacttgccaatagttttctcacaagcaaacaaaaccatattaacatgcatgcatatatacaaaatcacaa 29421992  T
Q  107 agataataaaaagtttcaacacttttgatcacc---ataacatataaaccattttcaatactt--ttacacctaaacagacatatatgcaatttttcttt 201  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| |||||||||| ||||  |||||||||||||||||||||||| ||||||||||    
T  29421993 agataataaaaagtttcaacacttttgatcaccgtaacaacatataagccattttcaacactttcttacacctaaacagacatatatgccatttttcttt 29422092  T
Q  202 gaattact--tatagcaggatcctagcaattacagaccaagtgatac 246  Q
    | ||||||  ||||||| |||||||| | ||||||||||||||||||    
T  29422093 gcattacttatatagcatgatcctagtatttacagaccaagtgatac 29422139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 29454527 - 29454439
Alignment:
Q  214 gcaggatcctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtcatgtagatttggtatctgaccaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  29454527 gcaggatcctagcaattacagaccaagtgatacaccaaatgaaaataaaaggaaaagaaagaagtcatgtagattaggtatctgaccaa 29454439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 29474694 - 29474635
Alignment:
Q  10 ggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa 69  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||    
T  29474694 ggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa 29474635  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 396
Target Start/End: Original strand, 29422299 - 29422392
Alignment:
Q  304 tgatctcacaccattcaagaagagatataaaacc-aggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatcc 396  Q
    |||||| |||||| | |||||||||  ||||| | ||| ||||||||||| | |||||||| |||||||||||| |||||||||||||||||||    
T  29422299 tgatcttacaccaatgaagaagagagttaaaaactaggcgatgctccatttcggatcaatttaacgcttcccgcaaatcaacatgactaaatcc 29422392  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 29474483 - 29474398
Alignment:
Q  167 ttacacctaaacagacatatatgcaatttttctttgaattacttatagcaggatcctagcaattacagaccaagtgatacaccaaa 252  Q
    ||||||||||||| ||||||| ||  ||||| |||| ||||||||||||| ||| |||||||||||| ||||||  ||||||||||    
T  29474483 ttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatactagcaattacaaaccaagacatacaccaaa 29474398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 29454770 - 29454711
Alignment:
Q  7 atgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa 69  Q
    ||||||||||||| |||   |||||||| ||||  ||||||||||||||||||||||||||||    
T  29454770 atgggtcacacaaatag---tcaagtaggttacccgccaatagttttttcacaagcaaacaaa 29454711  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29474538 - 29474485
Alignment:
Q  77 taacatgcaagcatatatacaaaatcacaaagataataaaaagtttcaacacttt 131  Q
    ||||||||| |||||| |||||||| ||||||||| ||||| |||||||||||||    
T  29474538 taacatgcatgcatatgtacaaaattacaaagatactaaaa-gtttcaacacttt 29474485  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 29473657 - 29473609
Alignment:
Q  204 attacttatagcaggatcctagcaattacagaccaagtgatacaccaaa 252  Q
    ||||||||||||| ||| |||||||||||| ||||||  ||||||||||    
T  29473657 attacttatagcaagatactagcaattacaaaccaagacatacaccaaa 29473609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 11988837 - 11988623
Alignment:
Q  87 gcatatatacaaaatcacaaagata-ataaaaagtttcaacacttttgatcaccataaca---tataaaccattttcaatacttt--tacacctaaacag 180  Q
    ||||||||||||||||||| ||||  | |||||   ||||||||||| |||| |||||||   |||||  ||||||||| |||||  |||||||||||||    
T  11988837 gcatatatacaaaatcacatagattgaaaaaaaaaatcaacactttttatcatcataacaacatataagtcattttcaacactttcttacacctaaacag 11988738  T
Q  181 acatatatgcaatttttctttgaattacttatagcaggatcctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtca 280  Q
     || |||||  ||||||||||| ||| |||||| ||||| |||||||||| || ||||||||||| ||||||   ||| |||||||||||||||||||||    
T  11988737 -caaatatggcatttttctttgtattgcttataacaggaacctagcaattgcataccaagtgataaaccaaa--aaaaaaaaaggaaaagaaagaagtca 11988641  T
Q  281 tgtagatttggtatctga 298  Q
    |||| || ||||||||||    
T  11988640 tgtacatatggtatctga 11988623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 12007635 - 12007467
Alignment:
Q  127 acttttgatcaccataac---atataaaccattttcaatactttt--acacctaaacagacatatatgcaatttttctttgaattacttatagcaggatc 221  Q
    |||||| |||||||||||   |||||| |||||||||| ||||||  |||||||||||||||||| ||  ||||||||||| ||| |||| ||||||||     
T  12007635 actttttatcaccataacgacatataagccattttcaacacttttttacacctaaacagacatatgtgtcatttttctttgtattgcttagagcaggatg 12007536  T
Q  222 ctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtcatgtagatttggtatct 296  Q
     |  |||||||||||||||||||| |||      |||||||||||||||| |||||||||||| || ||||||||    
T  12007535 ttttcaattacagaccaagtgataaacc------aaagaaaaggaaaagatagaagtcatgtacatatggtatct 12007467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 295
Target Start/End: Complemental strand, 12020138 - 12019961
Alignment:
Q  115 aaaagtttcaacacttttgatcaccataac---atataaaccattttcaatacttt--tacacctaaacagacatatatgcaatttttctttgaattact 209  Q
    |||| |||||||| |||| |||||||||||   |||||| |||||||||| |||||  |||||||||||| |||||||||| || |||  ||| ||| ||    
T  12020138 aaaaatttcaacaatttttatcaccataacgacatataagccattttcaacactttcttacacctaaacaaacatatatgccatcttt--ttgtattgct 12020041  T
Q  210 tatagcaggatcctagcaattacagaccaagtgatacaccaaatggaaagaaaaggaaaagaaagaagtcatgtagatttggtatc 295  Q
    |||||||||| |||| |||||| |||||| ||||||||||      || ||||||||||||| |||||||||||| || |||||||    
T  12020040 tatagcaggaacctaacaattatagaccaggtgatacacc------aatgaaaaggaaaagatagaagtcatgtacatctggtatc 12019961  T

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