View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_9 (Length: 406)
Name: NF12578_low_9
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 27716453 - 27716832
Alignment:
| Q |
19 |
aatatatcatgctaaaattgtgtgtggtatcccttgtagacatatctctaacagattgatttacattattttttacgtaagaaaaaatttctcctaattt |
118 |
Q |
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| T |
27716453 |
aatatatcatgctaaaattgtgtgtggtatcccttgtagacatatctctaacagattgatttacattattttt-acgtaagaaaaaatttctcctaattt |
27716551 |
T |
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| Q |
119 |
gtctactagttattacaaatagattttcttagaatgtaagtaaaaatgcagagacaaaca----taaaccccaaacgcaagctaccttaattgtctaatt |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
27716552 |
gtctactagttaatacaaatagattttcttagaatgtaagtaaaaatgcagagacaaccaaatataaaccccaaacgcaagctacctcaattgtctaatt |
27716651 |
T |
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| Q |
215 |
tcattacttcttcggtaaggatataattaacaaacaatatggtagctttctttaaattgaagctgaaccaatgtagctttctccataatctctagaatat |
314 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
27716652 |
tcattacttcttcggtaaggatataatttacaaacaatatggtagctttctttaaattgaagccgaaccaatgtagctttctccttaatctctagaatat |
27716751 |
T |
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| Q |
315 |
gaagcaaccagcatcattttaagtgaagg-tttagcttgatttccacaagcagcccctcccacaggtttctttttcatctca |
395 |
Q |
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||||||| |||||||||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27716752 |
gaagcaatcagcatcatttt-agtgaaggttttagcttaatttccacaaccagcacctcccacaggtttctttttcatctca |
27716832 |
T |
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