View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_high_15 (Length: 374)
Name: NF12579_high_15
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 29480667 - 29480458
Alignment:
| Q |
9 |
gagaagaaacattcacctttatttgaaagagtgattttatagagaacgatgggacaatctttatgattaatgtatttttaattttaaatcattaatataa |
108 |
Q |
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| T |
29480667 |
gagaagaaacattcagctttatttgatagagtgattttatagagaacgatgggacgatctttatgattaatgtatttttaattttaaatcattaatataa |
29480568 |
T |
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| Q |
109 |
catgtaattgatttgaaaactttgtctaaacacttcaaaatgctcatccaatacctcttttgagttcccttaaataaatgagattttttattatgaagaa |
208 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29480567 |
catgtaattgatttgaaaattttgtctaaacacttcaaaatgctcatccaatacctcttttgagttcccttaaataaatgagattttttattatgaagaa |
29480468 |
T |
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| Q |
209 |
aaataaacta |
218 |
Q |
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|||||||||| |
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| T |
29480467 |
aaataaacta |
29480458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 29480321 - 29480196
Alignment:
| Q |
225 |
acttttagttgaaaataacaatttttaaacttttaagacattggctacataattaccaat----gtaatactattatatttgattccttaaccaatgttc |
320 |
Q |
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| T |
29480321 |
acttttagttgaaaataacactttttaaacttttaagacattggctacataattaccaatgtacgtaatactattatatttgattccttaaccaatattc |
29480222 |
T |
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| Q |
321 |
caggtacaattgttagcatttccatt |
346 |
Q |
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| T |
29480221 |
caggtacaattgttagcatttccatt |
29480196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 33741144 - 33741218
Alignment:
| Q |
238 |
aataacaatttttaaacttttaagacattggctacataattaccaatgtaatactattatatttgattccttaac |
312 |
Q |
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| T |
33741144 |
aataacattttttaaacttttaaaacattgactacataattttcgatgtaataatactatatttgattacttaac |
33741218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 41666322 - 41666354
Alignment:
| Q |
286 |
taatactattatatttgattccttaaccaatgt |
318 |
Q |
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| T |
41666322 |
taatactattgtatttgattccttaaccaatgt |
41666354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 10302495 - 10302571
Alignment:
| Q |
246 |
tttttaaacttttaagacattggctacataattaccaatgtaa-tactattatatttgattccttaaccaatgttcc |
321 |
Q |
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| T |
10302495 |
tttttaagcttttaatgcattgactacacaattttcaatgtaaatactattatatttgattctttaaccagtgttcc |
10302571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 7881916 - 7881841
Alignment:
| Q |
231 |
agttgaaaataacaatttttaaacttttaagacattggctacataattaccaatgtaatactattatatttgattc |
306 |
Q |
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| T |
7881916 |
agttgaaaatcacactttttagacttcttaaacattggctacacaatttccaatgtaattcaagtatatttgattc |
7881841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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