View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_high_21 (Length: 305)
Name: NF12579_high_21
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 44003516 - 44003814
Alignment:
| Q |
1 |
caaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagacatactaca |
100 |
Q |
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| T |
44003516 |
caaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagacatac---a |
44003612 |
T |
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| Q |
101 |
tgttactattttaagcaggtttcactaattaggataataataaatcaatcagctagctagtagtttgtagaaacaaacacaaacggttacataaacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003613 |
tgttactattttaagcaggtttcactaattaggataa---taaatcaatcagctagctagtagtttgtagaaacaaacacaaacggttacataaacagca |
44003709 |
T |
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| Q |
201 |
tcgaaatgtctttgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatcaggaacaaacattgcatctta |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44003710 |
tcgaaatgttattgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatcaagaacaaacattgcatctta |
44003809 |
T |
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