View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12579_high_22 (Length: 298)
Name: NF12579_high_22
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 24504632 - 24504916
Alignment:
| Q |
3 |
aagagtatagggatgagtatgtggatgaaaatggttcaaaagaggatgggaatgtaagtgaagacagtgcactaggtgtacaatttggggacccagaa-- |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24504632 |
aagagtatagggatgagtatgtggatgaaaatggttcaaaaggggatggaaatgtaagtgaagacagtgcactaggtgtacaatttggggacccagaaga |
24504731 |
T |
|
| Q |
101 |
-gaagaagagatatgcagggaagatggttttggtgatgcagtaggtgaagaaacacaacaagaagaggacttatttgctgaatggatctctgaaccagtt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24504732 |
agaagaagagatctgcagggaagatggttttggtgatgcagtagatgaagaaacacaacaagaagatgacttatttgctgaatggatctctgaaccagtt |
24504831 |
T |
|
| Q |
200 |
gataattttagggatgaagaggaggtagttgaagcaattccagaaagagttactgaatctgtagctgaaatagatagagtgacag |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24504832 |
gataattttagggatgaagaggtggtagttgaagcaattccagaaggagttactgaatctgtagctgaaacagatagagtgacag |
24504916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 34897673 - 34897395
Alignment:
| Q |
3 |
aagagtatagggatgagtatgtggatgaaaatggttcaaaagaggatgggaatgtaagtgaagacagtgcactaggtgtacaatttggggacccagaaga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||| |||||| ||||||| |||||| ||||||||||| |
|
|
| T |
34897673 |
aagagtatagggatgagtatgtggatgagaatgggtcaaaaggggatggaaatgaaagtgaagatagtgcaataggtgttggatttggagacccagaaga |
34897574 |
T |
|
| Q |
103 |
agaagagatatgcagggaagatggttttggtgatgcagtaggtgaagaaacacaacaagaagaggacttatttgctgaatggatctctgaaccagttgat |
202 |
Q |
| |
|
||||||| | || |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||| |||| |
|
|
| T |
34897573 |
agaagagctttgtggggatgatggttttggtgatgcagtaggtgaagaaacacaac---aagatgacttatttgctgactggatcaatgaaccttttgag |
34897477 |
T |
|
| Q |
203 |
aattttagggatgaagaggaggtagttgaagcaattccagaaagagttactgaatctgtagctgaaatagatagagtgacag |
284 |
Q |
| |
|
||| ||||| ||| |||||||||| ||||||| || ||| | ||| || |||| ||| |||||| ||| |||||||||| |
|
|
| T |
34897476 |
aatattaggaatgtagaggaggtaaatgaagcagttgcagtaggaggtaatgaagtagtatctgaaacagaaagagtgacag |
34897395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University