View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_high_4 (Length: 561)
Name: NF12579_high_4
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Original strand, 41622566 - 41623093
Alignment:
| Q |
15 |
cacagatgcaaaacttgtgcatgaagctttcattcaaaaaggtgctctctatgcatctagaccacctgagaatccaacaaggaacatattcagtgccaac |
114 |
Q |
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| T |
41622566 |
cacagatgcaaaacttgtgcatgaagctttcattcaaaagggtgctctctatgcatctagaccacctgagaatccaacaaggaacatattcagtgcaaac |
41622665 |
T |
|
| Q |
115 |
aagttcactgtgaatgctgcagtttatggtccagtttggaaatcactgagaagaaacatggttcagaacatgctgagttcaactagactcaaggagttta |
214 |
Q |
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| T |
41622666 |
aagttcactgtgaatgctgcagtttatggtcctgtttggaaatcactaagaagaaacatggttcagaacatgctgagttcaactagactcaaggagttta |
41622765 |
T |
|
| Q |
215 |
aaagtgttagagacaaagcaatggataaactcatcaataggcttaaagttaatgctgagaataacaatggcgttgttattgttgtcagagatgcaaggtt |
314 |
Q |
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| T |
41622766 |
aaagtgttagagacaaagcaatggataaactcatcaataggcttaaagttaatgctgagaataacaatggcgttgttattgttgtcagagatgcaaggtt |
41622865 |
T |
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| Q |
315 |
tgctgttttttgcatacttgttgttatgtgttttggtttagaaatggatgaagaaaaacttgagagaatagatcaagttatgaagaatgtcctaatcact |
414 |
Q |
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| T |
41622866 |
tgctgttttttgcatacttgttgttatgtgttttggtttagaaatggatgaagaaaaacttgagagaatagatcaagttatgaagaatgtcctaatcact |
41622965 |
T |
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| Q |
415 |
ttagatccaagaattgatgactttttaccaatcctaagcgtgtttttctctaaacaaagaacgagagctttggaagttcgcaaagaacaagtcgaattcc |
514 |
Q |
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| T |
41622966 |
ttagatccaagaattgatgactttttaccaatcctaagcgtgtttttctctaaacaaagaaagagagctttggaagttcgcaaagaacaagtcgaattcc |
41623065 |
T |
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| Q |
515 |
tagttcctttcattgaacaaagaaggag |
542 |
Q |
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| T |
41623066 |
tagttcctttcattgaacaaagaaggag |
41623093 |
T |
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