View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_high_9 (Length: 426)
Name: NF12579_high_9
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 11034441 - 11034794
Alignment:
| Q |
12 |
acagagaggctggttatattgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
111 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034441 |
acagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
11034540 |
T |
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| Q |
112 |
tcacgacggatatccgcgcaagaaannnnnnnnnnnnnnnnnngatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgac |
211 |
Q |
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| T |
11034541 |
tcacgacggatatccgcgcaagaaatgttgttgttgttgt---gatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgac |
11034637 |
T |
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| Q |
212 |
acccatctcccagcccgaattccgacagagatttgcgatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctattcatacaattacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
11034638 |
acccatctcccagcccgaattccgacagagatttaccatagctaccaacatagaaagaattcacatcctgtgaatttgaagttctattcatacaattacc |
11034737 |
T |
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| Q |
312 |
aatgtatgaatattccatccgattcggacagctcaaatataacatagatttcgtcaa |
368 |
Q |
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| T |
11034738 |
aatgtatgagtattccatccgatttggacaactcatatataacatagatttcgtcaa |
11034794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 163 - 409
Target Start/End: Original strand, 11009179 - 11009422
Alignment:
| Q |
163 |
ccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgcgatagctaccaacat |
262 |
Q |
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| T |
11009179 |
ccatcatcttcaacatcccaag---tgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacat |
11009275 |
T |
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| Q |
263 |
agaaagaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgaatattccatccgattcggacagctcaaatataacatagattt |
362 |
Q |
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| T |
11009276 |
agaaagaattcacatcctgtgaatatgaagttctattcatacaattaccaatgtatgaatattccatccgattcggacagctcacatataacatagattt |
11009375 |
T |
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| Q |
363 |
cgtcaacatatgattagtgtagtttttgtatcgatgataggctaggt |
409 |
Q |
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| T |
11009376 |
cgtcaacatatgattagtgtagtttttgtatcgatgataggctaggt |
11009422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 10921628 - 10921684
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggat |
122 |
Q |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggat |
10921684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 386
Target Start/End: Original strand, 10975216 - 10975435
Alignment:
| Q |
167 |
catcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgcgatagctaccaacatagaa |
266 |
Q |
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||||||||| || ||||| |||||||||||||||| || |||||| ||| || | | |||||||| |||||||||| |||| |||||||||||| |
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| T |
10975216 |
catcttcaaaatttaaagatgtgagatacataaactctacacgacaagtgtctttcaacaccaattccgaaagagatttgctgtagcgaccaacatagaa |
10975315 |
T |
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| Q |
267 |
agaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgaatattccatccgattcggacagctcaaatataacatagatttcgtc |
366 |
Q |
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| T |
10975316 |
acgattcccgtgttgtgagtatgaaccactactcatacagttaccaacgtatgagtattccgtccaatttggacaactcacgtataacatagatttcgtc |
10975415 |
T |
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| Q |
367 |
aacatatgattagtgtagtt |
386 |
Q |
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| T |
10975416 |
aatatatggtcagtgtagtt |
10975435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 11000444 - 11000378
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaa |
132 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
11000444 |
tttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaa |
11000378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 11003424 - 11003354
Alignment:
| Q |
66 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaa |
136 |
Q |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaa |
11003354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 11009103 - 11009139
Alignment:
| Q |
75 |
actgttgagccaagaaagttcaaatccataaaacatc |
111 |
Q |
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| T |
11009103 |
actgttgagccaagaaagttcaaatccataatacatc |
11009139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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