View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_1 (Length: 738)

Name: NF12579_low_1
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_1
NF12579_low_1
[»] chr2 (10 HSPs)
chr2 (19-522)||(41701169-41701673)
chr2 (528-727)||(41700859-41701065)
chr2 (599-672)||(24450600-24450673)
chr2 (625-707)||(30930185-30930269)
chr2 (599-691)||(24548450-24548543)
chr2 (610-691)||(28143928-28144012)
chr2 (615-673)||(45002376-45002433)
chr2 (610-650)||(3912528-3912568)
chr2 (599-691)||(24450980-24451074)
chr2 (616-669)||(630171-630224)
[»] chr5 (22 HSPs)
chr5 (19-235)||(30291623-30291836)
chr5 (250-413)||(25701032-25701199)
chr5 (599-649)||(40373650-40373700)
chr5 (620-707)||(41912815-41912904)
chr5 (624-707)||(26657521-26657605)
chr5 (624-707)||(26929109-26929193)
chr5 (612-707)||(3419995-3420091)
chr5 (599-666)||(17762113-17762180)
chr5 (610-691)||(1832902-1832982)
chr5 (599-661)||(37447741-37447803)
chr5 (610-691)||(40318368-40318448)
chr5 (610-691)||(41409092-41409172)
chr5 (610-691)||(17762794-17762875)
chr5 (585-650)||(41912704-41912768)
chr5 (600-672)||(17694034-17694106)
chr5 (610-683)||(22554745-22554820)
chr5 (637-705)||(12048740-12048810)
chr5 (610-669)||(21118353-21118412)
chr5 (614-668)||(54194-54248)
chr5 (637-691)||(17694197-17694253)
chr5 (601-707)||(21117522-21117630)
chr5 (629-666)||(22554269-22554306)
[»] chr4 (15 HSPs)
chr4 (247-413)||(53998433-53998600)
chr4 (599-673)||(25051198-25051272)
chr4 (599-707)||(25051331-25051440)
chr4 (599-673)||(25051038-25051112)
chr4 (610-704)||(37996671-37996767)
chr4 (601-669)||(11132268-11132336)
chr4 (610-673)||(32668835-32668898)
chr4 (610-689)||(13540460-13540541)
chr4 (616-706)||(19583368-19583457)
chr4 (618-691)||(16177287-16177362)
chr4 (599-691)||(34852996-34853088)
chr4 (599-691)||(13540673-13540766)
chr4 (601-672)||(13542003-13542074)
chr4 (616-666)||(19585334-19585384)
chr4 (599-704)||(25446942-25447047)
[»] chr3 (19 HSPs)
chr3 (247-413)||(55494301-55494468)
chr3 (599-669)||(1102328-1102398)
chr3 (568-650)||(3142476-3142558)
chr3 (599-704)||(30081519-30081626)
chr3 (608-670)||(7165500-7165562)
chr3 (599-667)||(8494242-8494310)
chr3 (610-670)||(20126209-20126269)
chr3 (599-683)||(4144981-4145067)
chr3 (610-689)||(31720862-31720941)
chr3 (599-691)||(37834445-37834538)
chr3 (599-664)||(4160961-4161026)
chr3 (627-707)||(495180-495262)
chr3 (599-683)||(4161146-4161232)
chr3 (599-707)||(12946498-12946607)
chr3 (611-683)||(13698423-13698497)
chr3 (598-657)||(27532317-27532376)
chr3 (616-691)||(494645-494722)
chr3 (599-691)||(20105992-20106083)
chr3 (631-684)||(20126414-20126467)
[»] chr7 (28 HSPs)
chr7 (599-691)||(33536670-33536764)
chr7 (610-707)||(20561579-20561678)
chr7 (610-704)||(2486377-2486473)
chr7 (599-707)||(21665628-21665737)
chr7 (610-670)||(8237847-8237907)
chr7 (601-673)||(44603916-44603988)
chr7 (610-673)||(1502224-1502287)
chr7 (610-669)||(2739815-2739874)
chr7 (610-680)||(25480486-25480556)
chr7 (610-670)||(18869528-18869588)
chr7 (625-673)||(44606952-44607000)
chr7 (599-666)||(18869739-18869806)
chr7 (610-668)||(8669610-8669668)
chr7 (610-689)||(9669436-9669517)
chr7 (599-668)||(8669738-8669807)
chr7 (599-668)||(8669877-8669946)
chr7 (610-691)||(29529633-29529714)
chr7 (599-667)||(24865204-24865272)
chr7 (599-704)||(33536854-33536961)
chr7 (610-673)||(3743122-3743185)
chr7 (599-691)||(9669649-9669742)
chr7 (601-672)||(9677059-9677130)
chr7 (610-669)||(21666244-21666303)
chr7 (599-683)||(28644942-28645028)
chr7 (599-656)||(21666075-21666132)
chr7 (599-689)||(24718992-24719084)
chr7 (616-669)||(24719213-24719266)
chr7 (612-669)||(28645295-28645352)
[»] chr1 (18 HSPs)
chr1 (599-683)||(43761347-43761433)
chr1 (599-672)||(3592626-3592699)
chr1 (610-704)||(34903612-34903708)
chr1 (610-666)||(39313088-39313144)
chr1 (585-650)||(3591774-3591840)
chr1 (611-673)||(11080645-11080707)
chr1 (616-707)||(15198750-15198843)
chr1 (599-704)||(16682063-16682169)
chr1 (599-672)||(15913300-15913373)
chr1 (601-683)||(32034942-32035026)
chr1 (599-666)||(16086900-16086967)
chr1 (599-650)||(39157547-39157598)
chr1 (610-703)||(39312935-39313032)
chr1 (611-673)||(15121826-15121887)
chr1 (611-673)||(15146014-15146075)
chr1 (599-669)||(46022945-46023015)
chr1 (627-689)||(3591906-3591970)
chr1 (616-669)||(48994897-48994950)
[»] chr6 (14 HSPs)
chr6 (610-703)||(31794944-31795038)
chr6 (599-667)||(11959866-11959934)
chr6 (616-704)||(5089615-5089705)
chr6 (586-673)||(11854208-11854295)
chr6 (627-683)||(15555445-15555501)
chr6 (599-666)||(2999472-2999539)
chr6 (610-673)||(15554430-15554493)
chr6 (591-704)||(15556434-15556547)
chr6 (605-664)||(15554776-15554836)
chr6 (625-673)||(15555126-15555174)
chr6 (620-707)||(31794770-31794860)
chr6 (612-667)||(15555933-15555988)
chr6 (620-666)||(15556292-15556338)
chr6 (599-673)||(15558795-15558868)
[»] chr8 (8 HSPs)
chr8 (599-672)||(34913635-34913708)
chr8 (637-681)||(25699301-25699345)
chr8 (599-673)||(13004036-13004108)
chr8 (599-705)||(42498982-42499089)
chr8 (599-707)||(36648068-36648177)
chr8 (615-679)||(6128112-6128176)
chr8 (568-666)||(25699650-25699748)
chr8 (610-667)||(34913778-34913835)
[»] scaffold1609 (3 HSPs)
scaffold1609 (616-684)||(584-654)
scaffold1609 (599-669)||(251-320)
scaffold1609 (625-683)||(406-466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (610-704)||(77439-77534)
[»] scaffold0636 (1 HSPs)
scaffold0636 (599-707)||(1121-1231)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 41701673 - 41701169
Alignment:
Q  19 gttccatcacatagaactttgtaaggtttccgaaaaccaaaacatgcagtgtaaaaagtcaaactcttcctgtgtctcttttgtttcttaactttcatct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  41701673 gttccatcacatagaactttgtaaggtttccgaaaaccaaaacatgcagtgtaaaacgtcaaactcttcctatgtctcttttgtttcttaactttcatct 41701574  T
Q  119 acatnnnnnnnnnnnnnnngggtgtttaaattaaacaacaaagaaactaaatttgaagtttggtgttcagtgataataacaagttctttcataatatacc 218  Q
    ||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701573 acataaaaaaaccaaaaaagggtgtttaaattaaacaacaaagaaactaaatttgaagtttggtgttcagtgataataacaagttctttcataatatacc 41701474  T
Q  219 ttatgcgaaaaatctcaatgggtagtggcaggggcggagctacactatgttgagggtgttcaagtgaacccctgaactggacaaaaatacctgtaaatcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701473 ttatgcgaaaaatctcaatgggtagtggcaggggcggagctacactatgttgagggtgttcaagtgaacccctgaactggacaaaaatacctgtaaatcc 41701374  T
Q  319 aatataatttactttttgaaccccctcaaatattgatcttgcaccttaactcaaagaacct-aagagaagaaacaacacaagagatggtaaacagaaaaa 417  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  41701373 aatataatttactttttgaaccccctcaaatattgaccttgcaccttagctcaaagaacctaaagagaagaaacaacacaagagatggtaaacagagaaa 41701274  T
Q  418 cgctgatttgaaacaattccaaaaaggaatggaggtaattaccgaaggataacatgtagaaatcggataaatgaaattggnnnnnnntgataatttatat 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||    
T  41701273 cgctgatttgaaacaattccaaaaaggaatggaggtaattaccgaaggataacatgcagaaatcggataaatgaaattggaaaaaaatgataatttatat 41701174  T
Q  518 gagaa 522  Q
    |||||    
T  41701173 gagaa 41701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 528 - 727
Target Start/End: Complemental strand, 41701065 - 41700859
Alignment:
Q  528 tttgtttcgatcaatatt-gtgtcacactctaatgtgcttatatatat------gaagaatcaatttttcatatatccatatgagaaagttttgaaaact 620  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||      ||||||||||||||||||| |||||| |||||||||||||||||||    
T  41701065 tttgtttcgatcaatatttgtgtcacactctaatgtgcttatatatatatatatgaagaatcaatttttcatacatccatgtgagaaagttttgaaaact 41700966  T
Q  621 cataactattttcaa-catatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaaatatttgcaaagaaattcaca 719  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  41700965 cataactattttcaaacatatcaa-attaatttagtgtttttattaaatatttttattttatatgcaaaacaacgtcaaatatttgcaaagaaattcaca 41700867  T
Q  720 ttcatctc 727  Q
    ||||||||    
T  41700866 ttcatctc 41700859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 599 - 672
Target Start/End: Complemental strand, 24450673 - 24450600
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||||| ||| |||||||||||||| |||||||| || |||||||||| ||| |||||||||||||||||||||    
T  24450673 atatgataaaattttgaaaactcatgactatttttaaaatatcaacatcaatgtagtgtttctattaaatattt 24450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 625 - 707
Target Start/End: Complemental strand, 30930269 - 30930185
Alignment:
Q  625 actattttcaacatatcaacattaatttagtgtttctattaaatattt--tgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||  | |||||||||| |||||| | | |||||||||||    
T  30930269 actatttttaaaatatcaacattaatatagtgtttctattaaatattttattattttatatgcaaaacaccattaaatatttgca 30930185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 24548450 - 24548543
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||| ||| ||||||||||||||||||||||| || ||| ||| |||||| |||||||| |||||||||  |||| |||||||||| ||||||    
T  24548450 atatgataaaattttgaaaactcataactatttttaa-ataacaaaattaatgtagtgtttatattaaataactttttattttatatgcaaaaca 24548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 28143928 - 28144012
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata---ttttgattttatatggaaaaca 691  Q
    ||||| |||||||| ||||||||||| | |||||||||||| |||| |||||||||||||   |||| |||||||||| ||||||    
T  28143928 ttttggaaactcatcactattttcaaaaaatcaacattaatgtagtttttctattaaatatcttttttattttatatgtaaaaca 28144012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 673
Target Start/End: Complemental strand, 45002433 - 45002376
Alignment:
Q  615 aaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||||||||||||  || ||| |||||||||||||||||||| ||||||||||||    
T  45002433 aaaactcataactatttgaaa-ataccaacattaatttagtgtttcaattaaatatttt 45002376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 650
Target Start/End: Complemental strand, 3912568 - 3912528
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaat 650  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  3912568 ttttgaaaactcattactattttcaaaatatcaacattaat 3912528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 691
Target Start/End: Complemental strand, 24451074 - 24450980
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||| ||| ||||| ||| |||||||||||||||| || ||||||  ||| |||| | |||||||||||  |||| |||||||||| ||||||    
T  24451074 atatgataaaattttggaaagtcataactattttcaaaatttcaacaccaatgtagtttgtctattaaataactttttattttatatgcaaaaca 24450980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 630224 - 630171
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  630224 aaactcgtgactattttcaaattatcaacattaatatagtgtttctcttaaata 630171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 30291623 - 30291836
Alignment:
Q  19 gttccatcacatagaactttgtaaggtttccgaaaaccaaaacatgcagtgtaaaaagtcaaactcttcctgtgtctcttttgtttcttaactttcatct 118  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||    
T  30291623 gttccatcacatagaactttgtaaggttttcgaaaaccaaaacatgcagtgtaaaacgttaaactcttcctatgtctcttttgtttcttaaccttcatct 30291722  T
Q  119 acatnnnnnnnnnnnnnnngggtgtttaaattaaacaacaaagaaactaaatttgaagtttggtgttcagtgataataacaagttctttcataatatacc 218  Q
    ||||               |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  30291723 acataaaaaaatcaaaaaagggtattcaaattaaacaacaaagaaactaaatttgaagtttggtgttcagtgataataacaagttctttc---atatacc 30291819  T
Q  219 ttatgcgaaaaatctca 235  Q
    |||| | ||||||||||    
T  30291820 ttatacaaaaaatctca 30291836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 250 - 413
Target Start/End: Complemental strand, 25701199 - 25701032
Alignment:
Q  250 gggcggagctacactatgttgagggtgttcaagtgaac-ccctgaactggacaaaaa---tacctgtaaatccaatataatttactttttgaaccccctc 345  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||| || |||||   |||| ||||||| |||||| || |||||||||||||||||    
T  25701199 gggcggagctacactatgttgaggggattcaagtgaacaccctgaactcgaaaaaaaaaatacccgtaaatctaatatatttaactttttgaaccccctc 25701100  T
Q  346 aaatattgatcttgcaccttaactcaaagaacctaagagaagaaacaacacaagagatggtaaacaga 413  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25701099 aaatattgttcttgcaccttgactcaaagaacctaagagaagaaacaacaccagagatggtaaacaga 25701032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 599 - 649
Target Start/End: Complemental strand, 40373700 - 40373650
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaa 649  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  40373700 atatgagaaagttttgaaaacttatgactattttcaacatatcaacattaa 40373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 707
Target Start/End: Complemental strand, 41912904 - 41912815
Alignment:
Q  620 tcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg--attttatatggaaaacaacgtcaaatatttgca 707  Q
    |||| ||||||||||| |||||||||||||| |||||||| || ||||||| |||  |||||||||| |||||| ||| |||||||||||    
T  41912904 tcatgactattttcaaaatatcaacattaatatagtgtttttaataaatatgttgtcattttatatgcaaaacaccgttaaatatttgca 41912815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 624 - 707
Target Start/End: Complemental strand, 26657605 - 26657521
Alignment:
Q  624 aactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||||||||||  ||||||||||| || ||||||||||||||||| ||||| |||||||||  |||||| ||| |||||||||||    
T  26657605 aactattttcagaatatcaacattcatgtagtgtttctattaaataatttttattttatatttaaaacaccgttaaatatttgca 26657521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 624 - 707
Target Start/End: Complemental strand, 26929193 - 26929109
Alignment:
Q  624 aactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||||||||||  ||||||||||| || ||||||||||||||||| ||||| |||||||||  |||||| ||| |||||||||||    
T  26929193 aactattttcagaatatcaacattcatgtagtgtttctattaaataatttttattttatatttaaaacaccgttaaatatttgca 26929109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 707
Target Start/End: Complemental strand, 3420091 - 3419995
Alignment:
Q  612 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgat-tttatatggaaaacaacgtcaaatatttgca 707  Q
    ||||||| | || ||||||||||| |||||||||||| | || ||||| |||||||||||||| | ||| |||| |||||| ||| |||||||||||    
T  3420091 ttgaaaatttatgactattttcaaaatatcaacattagtataatgtttgtattaaatattttgttatttgtatgcaaaacaccgttaaatatttgca 3419995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 666
Target Start/End: Complemental strand, 17762180 - 17762113
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||||| ||| |||||||||||| | ||||||||||| |||||||||||||| | || ||||||||||    
T  17762180 atatgataaaattttgaaaactcgtgactattttcaaaatatcaacattaatgttgtctttctattaa 17762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 691
Target Start/End: Complemental strand, 1832982 - 1832902
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 691  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  1832982 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 1832902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 661
Target Start/End: Original strand, 37447741 - 37447803
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttct 661  Q
    |||||| ||| ||||||| |||||| || |||||||| |||||||||||||| ||||||||||    
T  37447741 atatgataaaattttgaacactcatgaccattttcaaaatatcaacattaatgtagtgtttct 37447803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 691
Target Start/End: Complemental strand, 40318448 - 40318368
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 691  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  40318448 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 40318368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 41409092 - 41409172
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaaca 691  Q
    ||||||||||||||||||||||| || ||||||||| ||| | ||||||  ||||||||| |||| |||||||||||||||||    
T  41409092 ttttgaaaactcataactatttt-aaaatatcaacactaa-taagtgttcttattaaatattttttattttatatggaaaaca 41409172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 691
Target Start/End: Complemental strand, 17762875 - 17762794
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||||||||||| | ||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||||    
T  17762875 ttttgaaaactcatgagtattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaaca 17762794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 650
Target Start/End: Complemental strand, 41912768 - 41912704
Alignment:
Q  585 tttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 650  Q
    ||||| || |||| ||||||||||||||||||||||  | |||||||||||||||| |||||||||    
T  41912768 tttttaatgtatcgatatgagaaagttttgaaaacttgtgactattttcaacatat-aacattaat 41912704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 672
Target Start/End: Complemental strand, 17694106 - 17694034
Alignment:
Q  600 tatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    ||||| ||| |||| ||||||| ||| |||||| || |||||||||||| | ||||||| |||||||||||||    
T  17694106 tatgataaaattttaaaaactcgtaattatttttaaaatatcaacattagtatagtgttgctattaaatattt 17694034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 683
Target Start/End: Complemental strand, 22554820 - 22554745
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    ||||| |||||| | |||||||| || |||||||||||||| |||||| ||||||||||  ||||| |||||||||    
T  22554820 ttttggaaactcgtgactatttttaaaatatcaacattaatgtagtgtgtctattaaataaatttttattttatat 22554745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 705
Target Start/End: Original strand, 12048740 - 12048810
Alignment:
Q  637 atatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttg 705  Q
    |||||||||| ||| ||||||||||||||||||  |||| |||||||||  |||||| ||| |||||||||    
T  12048740 atatcaacatcaatgtagtgtttctattaaataactttttattttatatttaaaacaccgttaaatatttg 12048810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 669
Target Start/End: Complemental strand, 21118412 - 21118353
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||| |||||| || | ||||||||| ||||||| ||||||||| |||||||||||||||    
T  21118412 tttttaaaactaatgattattttcaaaatatcaaaattaatttaatgtttctattaaata 21118353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 668
Target Start/End: Complemental strand, 54248 - 54194
Alignment:
Q  614 gaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 668  Q
    ||||||| |||  |||||| || |||| |||||||||||||||||||||||||||    
T  54248 gaaaacttatagatatttttaaaatattaacattaatttagtgtttctattaaat 54194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 691
Target Start/End: Complemental strand, 17694253 - 17694197
Alignment:
Q  637 atatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||||||||||| |||||||| |||||||||  |||| |||||||||| ||||||    
T  17694253 atatcaacattaatgtagtgtttatattaaatatttttttattttatatgtaaaaca 17694197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 707
Target Start/End: Complemental strand, 21117630 - 21117522
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaa 698  Q
    |||| ||| |||| ||||||||  ||||||||||| |||||||||| ||| |||| |||| ||||||||   ||| |||||||||  |||||| ||  ||    
T  21117630 atgataaaattttaaaaactcacgactattttcaaaatatcaacatcaatgtagtatttcaattaaataacattttattttatatttaaaacaccgataa 21117531  T
Q  699 atatttgca 707  Q
    |||||||||    
T  21117530 atatttgca 21117522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 666
Target Start/End: Complemental strand, 22554306 - 22554269
Alignment:
Q  629 ttttcaacatatcaacattaatttagtgtttctattaa 666  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  22554306 ttttcaaaatatcaacattaatgtagtgtttctattaa 22554269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 5e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 247 - 413
Target Start/End: Complemental strand, 53998600 - 53998433
Alignment:
Q  247 caggggcggagctacactatgttgagggtgttcaagtgaac-ccctgaactggacaaaaatacctgtaaatccaatataatttactttttgaaccccctc 345  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  53998600 caggggcggagctacactatgttgaggggattcaagtgaacaccctgaactggaaaaaaatacccgtaaatctaatatattttactttttgaaccccctc 53998501  T
Q  346 aaatattgatcttgcaccttaactcaaagaacctaagagaagaaacaacacaagagatggtaaacaga 413  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  53998500 aaatattgttcttgaaccttgactcaaagaacctaagagaagaaacaacaccagagatggtaaacaga 53998433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 25051272 - 25051198
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||| ||| ||| ||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  25051272 atatgataaaatttggaaaacttataactattttcaaaatatcaatattaatatagtgtttctattaaatatttt 25051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 707
Target Start/End: Complemental strand, 25051440 - 25051331
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt-tgattttatatggaaaacaacgtca 697  Q
    |||||| ||| |||||||||||||| | |||||| || |||||||||||||| || | |||||||||||||||| | |||||||||| | |||| ||| |    
T  25051440 atatgataaaattttgaaaactcatgattatttttaaaatatcaacattaatatattatttctattaaatatttgttattttatatgtataacaccgtta 25051341  T
Q  698 aatatttgca 707  Q
    ||| ||||||    
T  25051340 aatgtttgca 25051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 25051112 - 25051038
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||||  |||||| || ||||||||| |||||||||    
T  25051112 atatgataaaattttgaaaactcataacgattttcaaaatatcagtattaatgtaatgtttctatcaaatatttt 25051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 610 - 704
Target Start/End: Original strand, 37996671 - 37996767
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 704  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||||| | ||||||  ||||| |||||||||  |||||| | | ||||||||    
T  37996671 ttttgaaaactcatgactatttttaaaatatcaacattaatgtagtgtttttgttaaataaattttcattttatatttaaaacaccattaaatattt 37996767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 669
Target Start/End: Complemental strand, 11132336 - 11132268
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||| ||  |||||||||| |||||||    
T  11132336 atgataaaattttgaaaactcatgactattttcaaaatatcaacatcaaggtagtgtttcttttaaata 11132268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 32668898 - 32668835
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||||||  | ||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  32668898 ttttgaaaactattgactattttcaaaatttcaacattaatgtagtttttctattaaatatttt 32668835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 689
Target Start/End: Original strand, 13540460 - 13540541
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 689  Q
    |||| ||||||||| ||||||||||| ||||||| ||| || ||||| ||||||||||||  |||| |||||||||| ||||    
T  13540460 ttttaaaaactcatgactattttcaaaatatcaaaatttatgtagtgcttctattaaataactttttattttatatgtaaaa 13540541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 706
Target Start/End: Complemental strand, 19583457 - 19583368
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaaatatttgc 706  Q
    ||||||||||||||||| || ||||| ||| |||| ||||||||||||| |||| | |  ||||| ||| |||||| ||||||||||||||    
T  19583457 aaactcataactatttttaaaatatcgacagtaatgtagtgtttctattgaata-tatctttttacatgcaaaacaccgtcaaatatttgc 19583368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 691
Target Start/End: Original strand, 16177287 - 16177362
Alignment:
Q  618 actcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||| ||||||||||| |||  ||||||||| |||||||| |||||||||  ||||||||||||| | ||||||    
T  16177287 actcatgactattttcaaaataaaaacattaatgtagtgtttttattaaataatttttgattttataagcaaaaca 16177362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 691
Target Start/End: Complemental strand, 34853088 - 34852996
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaaca 691  Q
    |||||| ||| |||| |||||| || |||| |||||| ||  ||| ||||||||||||||||||||||||  ||||| |||||||||| ||||||    
T  34853088 atatgataaaattttaaaaacttatgactactttcaaaat--caaaattaatttagtgtttctattaaataaatttttattttatatgcaaaaca 34852996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 13540673 - 13540766
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||| ||| | |||||||||||| ||||||||||| |||| || |||||  ||||||||||||||||||   ||| |||||||||| ||||||    
T  13540673 atatgataaaatattgaaaactcatgactattttcaaaatat-aaaattaaggtagtgtttctattaaataacgttttattttatatgcaaaaca 13540766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 672
Target Start/End: Original strand, 13542003 - 13542074
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||| ||| |||| ||| || ||||||||||| || |||||||||||||| || |||||||| |||||||||    
T  13542003 atgataaaattttaaaacctaataactattttaaaaatatcaacattaatataatgtttctaataaatattt 13542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 666
Target Start/End: Complemental strand, 19585384 - 19585334
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    ||||| || ||||||||||| |||||||||||||| |||||||||| ||||    
T  19585384 aaactaatgactattttcaaaatatcaacattaatgtagtgtttctgttaa 19585334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 704
Target Start/End: Original strand, 25446942 - 25447047
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaacaacgtcaa 698  Q
    |||||| ||| ||||  |||||||| | |||||| || |||||||||| ||| |||||| | ||||||||||||| |  ||||||  |||||| ||| ||    
T  25446942 atatgataaaattttagaaactcatgattatttttaaaatatcaacataaatatagtgtgtttattaaatatttttaagttatatttaaaacaccgttaa 25447041  T
Q  699 atattt 704  Q
    ||||||    
T  25447042 atattt 25447047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 247 - 413
Target Start/End: Original strand, 55494301 - 55494468
Alignment:
Q  247 caggggcggagctacactatgttgagggtgttcaagtgaacccc-tgaactggacaaaaatacctgtaaatccaatataattt-actttttgaaccccct 344  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||| |||||| ||| |||||||||||||| |    
T  55494301 caggggaggagctacactatgttgagggtgttcaagtgaaccccctgaatcgggaaaaaatacctgtaaatctaatatatttttactttttgaacccc-t 55494399  T
Q  345 caaatattgatcttgcaccttaactcaaagaacctaagagaagaaacaacacaagagatggtaaacaga 413  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  55494400 caaatattgttcttgcaccttaactcaaagaacctaagagaagaaacaacacgggagatgataaacaga 55494468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 1102328 - 1102398
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| ||| ||||  |||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  1102328 atatgataaaattttagaaactcataactattttcaaaatatcaacattaatgtagtgtgtctattaaata 1102398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 568 - 650
Target Start/End: Original strand, 3142476 - 3142558
Alignment:
Q  568 tatatatgaagaatcaatttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 650  Q
    ||||||||  ||| |||||||| || |||| || |||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  3142476 tatatatggggaagcaattttttatgtatcgatctgagaatgttttgaaaactcatgactattttcaacatatcaacgttaat 3142558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 599 - 704
Target Start/End: Complemental strand, 30081626 - 30081519
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 696  Q
    |||||| ||| ||||| |||||||| |||||||| || |||||||||||||| | |||||| |||||||||  |||| |||||||||  |||||| |||     
T  30081626 atatgataaaattttggaaactcatgactattttgaaaatatcaacattaatgtcgtgtttatattaaataactttttattttatatttaaaacaccgtt 30081527  T
Q  697 aaatattt 704  Q
    ||||||||    
T  30081526 aaatattt 30081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 7165562 - 7165500
Alignment:
Q  608 agttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 670  Q
    ||||||||||||| ||||||||||| |  ||||| |||||||| |||||||||||||||||||    
T  7165562 agttttgaaaactaataactatttttataatatctacattaatgtagtgtttctattaaatat 7165500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 8494242 - 8494310
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 667  Q
    |||||| ||||||| ||||||| ||||||||||| || |||| ||||||||| |||| |||||||||||    
T  8494242 atatgataaagtttcgaaaactaataactatttttaaaatataaacattaatgtagtatttctattaaa 8494310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 20126209 - 20126269
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 670  Q
    |||| |||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||||    
T  20126209 ttttaaaaattcatgactattttcaaaatatcaacatcaatgtagtgtttctattaaatat 20126269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 4144981 - 4145067
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    |||||| ||| || ||||||||||| | ||||||||| |||| ||||||||| ||||||||||||| |||  ||||| |||||||||    
T  4144981 atatgataaaattgtgaaaactcattaatattttcaaaatataaacattaatatagtgtttctattgaataaatttttattttatat 4145067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 689
Target Start/End: Original strand, 31720862 - 31720941
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 689  Q
    |||||||||||||| ||||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||    
T  31720862 ttttgaaaactcatcactattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaa 31720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 37834445 - 37834538
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaaca 691  Q
    |||||| ||| |||||||||||||  ||||||||||| ||||||| |||||| |||| ||||||||||||  ||||| ||||||| || ||||||    
T  37834445 atatgataaaattttgaaaactcaagactattttcaa-atatcaaaattaatgtagtttttctattaaataaatttttattttatttgcaaaaca 37834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 664
Target Start/End: Original strand, 4160961 - 4161026
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctatt 664  Q
    |||||| ||| || ||||||||||| | ||||||||| |||| ||||||||| |||||||||||||    
T  4160961 atatgataaaattgtgaaaactcattaatattttcaaaatataaacattaatatagtgtttctatt 4161026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 707
Target Start/End: Original strand, 495180 - 495262
Alignment:
Q  627 tattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttgca 707  Q
    ||||||||  |||||||||| ||| ||||||||||||||||||  |||| |||||||||  |||| | ||| |||||||||||    
T  495180 tattttcagaatatcaacatcaatgtagtgtttctattaaataactttttattttatatttaaaataccgttaaatatttgca 495262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 4161146 - 4161232
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    |||||| ||| || ||||||||||| | ||||||||| | || ||||||||| ||||||||||||| |||  ||||| |||||||||    
T  4161146 atatgataaaattgtgaaaactcattaatattttcaaaagataaacattaatatagtgtttctattgaataaatttttattttatat 4161232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 707
Target Start/End: Original strand, 12946498 - 12946607
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 696  Q
    |||||| ||| |||| ||||| ||| | ||||||||| ||||||| |||| | |||| |||||||||||||  |||| ||||||||| ||||||| | |     
T  12946498 atatgataaaattttaaaaacacattattattttcaaaatatcaaaattattgtagtatttctattaaataagttttaattttatat-gaaaacaccttt 12946596  T
Q  697 aaatatttgca 707  Q
    |||||||||||    
T  12946597 aaatatttgca 12946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 683
Target Start/End: Complemental strand, 13698497 - 13698423
Alignment:
Q  611 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    ||||||||||||| || |||||||| |||||||||||||| | || | ||||||||||  ||||| |||||||||    
T  13698497 tttgaaaactcatgacaattttcaaaatatcaacattaatgttgtttgtctattaaattaattttcattttatat 13698423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 27532376 - 27532317
Alignment:
Q  598 catatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgt 657  Q
    ||||||| ||| |||||||||||||| | |||||| || |||||||||||||| ||||||    
T  27532376 catatgataaaattttgaaaactcatgattatttttaaaatatcaacattaatatagtgt 27532317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 691
Target Start/End: Original strand, 494645 - 494722
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||||| | |||| |||| |||| ||||||||| ||||||||||||| ||||  |||| |||||||||| ||||||    
T  494645 aaactcattaatattgtcaaaatataaacattaatatagtgtttctattgaataactttttattttatatgcaaaaca 494722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 691
Target Start/End: Complemental strand, 20106083 - 20105992
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat-attttgattttatatggaaaaca 691  Q
    |||||| ||| ||||||||||| || ||||||| ||| ||||||||||||| | ||||||  |||||||| ||||| |||||||||| ||||||    
T  20106083 atatgataaaattttgaaaacttatgactattt-caaaatatcaacattaa-taagtgttcttattaaataatttttattttatatgaaaaaca 20105992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 684
Target Start/End: Original strand, 20126414 - 20126467
Alignment:
Q  631 ttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatg 684  Q
    ||||| ||||| |||| ||| |||||||| ||||||||||||| ||||||||||    
T  20126414 ttcaaaatatcgacatcaatgtagtgtttttattaaatatttttattttatatg 20126467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 33536670 - 33536764
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa--atattttgattttatatggaaaaca 691  Q
    |||||| ||| |||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||  | ||||| |||||||||| ||||||    
T  33536670 atatgataaaattttgaaaactcgtgactattttcaaaatatcaacattaatatagtgtttctattaattaaatttttattttatatgcaaaaca 33536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 707
Target Start/End: Complemental strand, 20561678 - 20561579
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat--tttgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||||||||  |||||||  | | |||||||||| |||||| ||| |||||||||||    
T  20561678 ttttaaaaactcatgactattttcaaaatatcaatattaatttagtgtttcttataaatattctattattttatatgcaaaacaccgttaaatatttgca 20561579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 704
Target Start/End: Original strand, 2486377 - 2486473
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 704  Q
    ||||||||||||||||||||||| || |||| || |||||| |||||||||||||| ||  ||||| |||||| ||| |||| ||||| ||||||||    
T  2486377 ttttgaaaactcataactatttttaaaatattaaaattaatgtagtgtttctattagataaattttaattttacatgcaaaataacgttaaatattt 2486473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 707
Target Start/End: Complemental strand, 21665737 - 21665628
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtca 697  Q
    |||||| ||| |||| ||||||| | |||||||| || |||||||||| ||| |||||||||||||||||| |||| |||||||||  |||||| | | |    
T  21665737 atatgataaacttttaaaaactcgtgactatttttaaaatatcaacataaatatagtgtttctattaaatattttttattttatatacaaaacaccatta 21665638  T
Q  698 aatatttgca 707  Q
    ||||||||||    
T  21665637 aatatttgca 21665628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 8237847 - 8237907
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 670  Q
    |||||||||||||| ||||||||||| |||||||||||||| || ||||||| ||||||||    
T  8237847 ttttgaaaactcatgactattttcaaaatatcaacattaatataatgtttctcttaaatat 8237907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 601 - 673
Target Start/End: Complemental strand, 44603988 - 44603916
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||| ||| ||||||||| || | |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  44603988 atgataaaattttgaaaaatcgtgactattttaaaaatatcaacattaatttagtgtttctattatatatttt 44603916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 1502287 - 1502224
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||||||||| || ||||||    
T  1502287 ttttgaaaactcatcactattttcaaaatataaacattaatttattgtttctatcaattatttt 1502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 669
Target Start/End: Original strand, 2739815 - 2739874
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||    
T  2739815 ttttgaaaacttatgactattttcaaaatatcaacattaatgtagtgtgtctattaaata 2739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 680
Target Start/End: Original strand, 25480486 - 25480556
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgatttta 680  Q
    |||| ||||||||| | |||||| || |||||||||||||| |||||||||||||||||||| | ||||||    
T  25480486 ttttaaaaactcatgattatttttaaaatatcaacattaatgtagtgtttctattaaatattattatttta 25480556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 670
Target Start/End: Complemental strand, 18869588 - 18869528
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatat 670  Q
    |||||||||||| | | ||||||||| |||||||||||||| || ||||||||||||||||    
T  18869588 ttttgaaaactcgtgattattttcaaaatatcaacattaatatactgtttctattaaatat 18869528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 673
Target Start/End: Complemental strand, 44607000 - 44606952
Alignment:
Q  625 actattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  44607000 actatttttaaaatatcaacattaatttagtgtttctattagatatttt 44606952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 666
Target Start/End: Complemental strand, 18869806 - 18869739
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||||| ||| |||||||||||||||| | |||||||| ||||||||||||| | |||||| ||||||    
T  18869806 atatgataaaattttgaaaactcataattgttttcaacctatcaacattaatgttgtgtttgtattaa 18869739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 8669610 - 8669668
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 668  Q
    |||||||||||||  ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669610 ttttgaaaactcacgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 689
Target Start/End: Original strand, 9669436 - 9669517
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 689  Q
    |||| ||||||||| ||||||||||| ||||||| ||| || ||||| ||||||||||||  |||| |||||||||| ||||    
T  9669436 ttttaaaaactcatgactattttcaaaatatcaaaatttatgtagtgcttctattaaataactttttattttatatgtaaaa 9669517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 668
Target Start/End: Original strand, 8669738 - 8669807
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 668  Q
    |||||| ||| ||||||||||||   ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669738 atatgataaaattttgaaaactcgcgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 668
Target Start/End: Original strand, 8669877 - 8669946
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat 668  Q
    |||||| ||| ||||||||||||   ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  8669877 atatgataaaattttgaaaactcgcgactgttttcaaaatatgaacattaatgtagtgtttctattaaat 8669946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 29529633 - 29529714
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||| ||||||||| ||||||||||| ||  ||| |||||| ||||||||||||||||||  |||| |||||||||| ||||||    
T  29529633 ttttaaaaactcatcactattttcaaaat--caaaattaatgtagtgtttctattaaataactttttattttatatgcaaaaca 29529714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 24865204 - 24865272
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 667  Q
    |||||| ||| |||| |||| |||| ||||||||||| ||||||| |||||| |||||||| |||||||    
T  24865204 atatgataaaattttaaaaattcatgactattttcaaaatatcaaaattaatgtagtgtttttattaaa 24865272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 704
Target Start/End: Original strand, 33536854 - 33536961
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 696  Q
    |||||| ||| |||||||||| | | ||||||||||| |||||||||| ||| || ||| |||||||||||  |||| |||||||||  ||||||  ||     
T  33536854 atatgataaaattttgaaaacacgtgactattttcaaaatatcaacatgaatgtattgtgtctattaaataattttttattttatatttaaaacattgtt 33536953  T
Q  697 aaatattt 704  Q
    ||||||||    
T  33536954 aaatattt 33536961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 673
Target Start/End: Original strand, 3743122 - 3743185
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||||||| | |||||||| || |||| ||||| ||| || |||||||||||||||||||    
T  3743122 ttttgaaaactcgtgactatttttaaaatataaacatcaatataatgtttctattaaatatttt 3743185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 691
Target Start/End: Original strand, 9669649 - 9669742
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaaca 691  Q
    |||||| ||| | |||||||||||| ||||||||||| |||| || |||||  ||||||||||||||||||   ||| |||||||||| ||||||    
T  9669649 atatgataaaatattgaaaactcatgactattttcaaaatat-aaaattaaggtagtgtttctattaaataacgttttattttatatgcaaaaca 9669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 672
Target Start/End: Original strand, 9677059 - 9677130
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||| ||| |||| ||| || ||||||||||| || |||||||||||||| || |||||||| |||||||||    
T  9677059 atgataaaattttaaaacctaataactattttaaaaatatcaacattaatataatgtttctaataaatattt 9677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 669
Target Start/End: Complemental strand, 21666303 - 21666244
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    ||||||||| |||| ||||||||||| |||| || |||||| |||| |||||||||||||    
T  21666303 ttttgaaaattcatgactattttcaaaatattaaaattaatgtagtatttctattaaata 21666244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 28644942 - 28645028
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    |||||| ||| ||||  |||||| | ||||||||||| |||| ||||||||| |||||| ||||||||||  ||||| |||||||||    
T  28644942 atatgataaaattttagaaactcgtgactattttcaaaatattaacattaatgtagtgtgtctattaaataaatttttattttatat 28645028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 21666132 - 21666075
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtg 656  Q
    |||||| ||| |||||||||||||| ||||||||||| |||| ||| ||||| |||||    
T  21666132 atatgataaaattttgaaaactcatgactattttcaaaatataaaccttaatgtagtg 21666075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 689
Target Start/End: Complemental strand, 24719084 - 24718992
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa--atattttgattttatatggaaaa 689  Q
    |||||| ||| ||||||||| | || | |||||| || |||||||||||||  |||||||||||||||  | ||||| |||||||||| ||||    
T  24719084 atatgataaaattttgaaaatttatgagtatttttaaaatatcaacattaacgtagtgtttctattaattaaatttttattttatatgtaaaa 24718992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 24719266 - 24719213
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| | ||||||||||| ||||||| |||||| |||||| |||||||||||    
T  24719266 aaactcgtcactattttcaaaatatcaatattaatgtagtgtgtctattaaata 24719213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 28645295 - 28645352
Alignment:
Q  612 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||||||||| | |||||| || |||| ||||| ||| ||||||||||||||||||    
T  28645295 ttgaaaactcatgattatttttaatatataaacatcaatgtagtgtttctattaaata 28645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 43761347 - 43761433
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatat 683  Q
    |||||| ||| ||||  |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  43761347 atatgataaaattttagaaactcataactattttcaaaatatcaacatcaatgtagtgtttctattaaataactttttattttatat 43761433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 672
Target Start/End: Complemental strand, 3592699 - 3592626
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||||| ||| |||||||||||| | ||||||||||| |||| ||||||||| |||||||| ||||||||||||    
T  3592699 atatgataaaattttgaaaactcgtgactattttcaaaatattaacattaatgtagtgtttttattaaatattt 3592626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 610 - 704
Target Start/End: Complemental strand, 34903708 - 34903612
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatattt 704  Q
    ||||| |||||| || ||||||| || |||||||||||||| |||||| ||||||||||  ||||| |||||||||  |||||| ||| ||||||||    
T  34903708 ttttggaaactcttacctatttttaaaatatcaacattaatgtagtgtgtctattaaataaatttttattttatatttaaaacaccgttaaatattt 34903612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 666
Target Start/End: Original strand, 39313088 - 39313144
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||||||||||| ||||||||||||| ||||||| ||||||  ||||||||||||||    
T  39313088 ttttgaaaactcgtaactattttcaaaatatcaagattaatgcagtgtttctattaa 39313144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 650
Target Start/End: Complemental strand, 3591840 - 3591774
Alignment:
Q  585 tttttcatatatccatatgagaaagttttgaaaactcat-aactattttcaacatatcaacattaat 650  Q
    ||||| |||| || |||||||||||||||||||||||||  ||||||||||| |||||||| |||||    
T  3591840 tttttaatatttcaatatgagaaagttttgaaaactcatggactattttcaagatatcaacgttaat 3591774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 673
Target Start/End: Complemental strand, 11080707 - 11080645
Alignment:
Q  611 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||||| |||| |||||||||||  |||||||||||||  ||||||||| |||||||||||    
T  11080707 tttgaaaaatcatcactattttcaaattatcaacattaatacagtgtttcttttaaatatttt 11080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 707
Target Start/End: Complemental strand, 15198843 - 15198750
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||||||| | |||| |||| ||||  |||||||| ||||||||||||||||||  |||| |||||||||| |||||| |||  ||||||||||    
T  15198843 aaactcattaatattgtcaaaatatatacattaatatagtgtttctattaaataactttttattttatatgcaaaacaccgttcaatatttgca 15198750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 704
Target Start/End: Original strand, 16682063 - 16682169
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttg-attttatatggaaaacaacgtca 697  Q
    |||||| ||| ||||||||  |||| ||||||||||| ||||  ||| |||| |||||||||||| |||||||||| |||| ||||  |||||| ||| |    
T  16682063 atatgataaaattttgaaagttcatgactattttcaaaatatgtacagtaatgtagtgtttctatcaaatattttgtatttaatattcaaaacaccgtta 16682162  T
Q  698 aatattt 704  Q
    |||||||    
T  16682163 aatattt 16682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 15913300 - 15913373
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||||| ||| |||| |||||||| || || |||||| |||||||||||||| ||||| || ||||||||||||    
T  15913300 atatgataaaattttaaaaactcaaaattactttcaaaatatcaacattaatatagtgattttattaaatattt 15913373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 683
Target Start/End: Original strand, 32034942 - 32035026
Alignment:
Q  601 atgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatat 683  Q
    |||| ||| |||||||||||| | |||||||| || ||||||| |||||| ||||| ||||||||||||  |||| |||||||||    
T  32034942 atgataaaattttgaaaactcgtgactatttttaaaatatcaaaattaatgtagtgcttctattaaataacttttcattttatat 32035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 666
Target Start/End: Original strand, 16086900 - 16086967
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||||||| |||||||||| ||| | |||||||||||||||||||||  |   |||||||||||||||    
T  16086900 atatgagatagttttgaaagctcgtgactattttcaacatatcaacacaatggtagtgtttctattaa 16086967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 650
Target Start/End: Complemental strand, 39157598 - 39157547
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaat 650  Q
    |||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||    
T  39157598 atatgataaaattttgaaaacttataactattttcaaaatatcaaaattaat 39157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 703
Target Start/End: Original strand, 39312935 - 39313032
Alignment:
Q  610 ttttgaaaactcataactattttcaacatat--caacattaatttagtgtttctattaaat--attttgattttatatggaaaacaacgtcaaatatt 703  Q
    ||||| |||||||| ||||||||||| | ||  |||||||||| |||||| ||||||||||  ||||| |||||||||  |||||| ||| |||||||    
T  39312935 ttttggaaactcatgactattttcaaaaaatttcaacattaatgtagtgtgtctattaaataaatttttattttatatttaaaacaccgttaaatatt 39313032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 673
Target Start/End: Complemental strand, 15121887 - 15121826
Alignment:
Q  611 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||||||| |||||||||||    
T  15121887 tttgaaaactcgtaacatttttcaa-atatcaacaataatatagtgtttctgttaaatatttt 15121826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 673
Target Start/End: Complemental strand, 15146075 - 15146014
Alignment:
Q  611 tttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||||||| |||||||||||    
T  15146075 tttgaaaactcgtaacatttttcaa-atatcaacaataatatagtgtttctgttaaatatttt 15146014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 46023015 - 46022945
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| ||| || || |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  46023015 atatgataaaattgtggaaactcgtgactattttcaaattatcaacattaatgtagtgtttctcttaaata 46022945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 689
Target Start/End: Complemental strand, 3591970 - 3591906
Alignment:
Q  627 tattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaa 689  Q
    |||||| || |||||||||||||| | ||||||||||||||||  |||| |||||||||| ||||    
T  3591970 tatttttaagatatcaacattaatgttgtgtttctattaaataatttttcattttatatgcaaaa 3591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 48994897 - 48994950
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| | |||||||||||  ||||||||||||| |||||||||| |||||||    
T  48994897 aaactcgtgactattttcaaattatcaacattaatgtagtgtttctcttaaata 48994950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 610 - 703
Target Start/End: Original strand, 31794944 - 31795038
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatatt 703  Q
    |||| ||||||| | ||||||||||| |||||||||||||| ||||| || ||||||||| |||| |||||||||| |||||| ||| |||||||    
T  31794944 ttttaaaaactcgtgactattttcaatatatcaacattaatgtagtgcttttattaaatattttttattttatatgtaaaacaccgttaaatatt 31795038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 11959866 - 11959934
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 667  Q
    |||||| ||| |||||||||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  11959866 atatgataaatttttgaaaactcattattatttttaaaatatcaacattaatgtagtgtttctattaaa 11959934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 704
Target Start/End: Complemental strand, 5089705 - 5089615
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtcaaatattt 704  Q
    |||||||| | ||||||||| |||||||||||||| ||||||||||||||||||  |||| | |||||||| |||||| |||  |||||||    
T  5089705 aaactcatgattattttcaaaatatcaacattaatgtagtgtttctattaaataactttttactttatatgcaaaacaccgttcaatattt 5089615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 11854208 - 11854295
Alignment:
Q  586 ttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    ||||||| |||| |||||| ||| |||||||||||||| | |||||| || | |||||| ||||| |||||||||| |||||||||||    
T  11854208 ttttcatgtatcgatatgataaaattttgaaaactcattattatttttaaaagatcaactttaatgtagtgtttctgttaaatatttt 11854295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 683
Target Start/End: Complemental strand, 15555501 - 15555445
Alignment:
Q  627 tattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatat 683  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||| |||||||||    
T  15555501 tattttcaaaatatcaacattaatatagtgtttctattaaattattttattttatat 15555445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 666
Target Start/End: Complemental strand, 2999539 - 2999472
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||||| ||| |||| |||| |||| ||||||||||| |||||||||| ||| |||||||||||||||    
T  2999539 atatgataaaattttaaaaagtcatgactattttcaaaatatcaacatcaatgtagtgtttctattaa 2999472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 15554493 - 15554430
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||| ||||||||| |  |||||||| |||||||||||||| |||| |||||||||||||||||    
T  15554493 ttttaaaaactcatgatcattttcaaaatatcaacattaatatagtatttctattaaatatttt 15554430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 704
Target Start/End: Complemental strand, 15556547 - 15556434
Alignment:
Q  591 atatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgattttatatggaaaac 690  Q
    ||||||| |||||| ||| |||| ||||||||| | | |||| ||||||||||||||||| |||| |||||   |||| |||| |||||||| | ||||     
T  15556547 atatatcgatatgataaattttttaaaactcatgattgtttttaacatatcaacattaatgtagtttttctgagaaatttttttattttataagtaaaat 15556448  T
Q  691 aacgtcaaatattt 704  Q
    | ||| ||||||||    
T  15556447 accgttaaatattt 15556434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 664
Target Start/End: Complemental strand, 15554836 - 15554776
Alignment:
Q  605 gaaagttttgaaaactcataactattttc-aacatatcaacattaatttagtgtttctatt 664  Q
    |||||||||||||| |||| | ||||||  ||||||||||||||||| |||||||||||||    
T  15554836 gaaagttttgaaaagtcattattattttttaacatatcaacattaatgtagtgtttctatt 15554776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 673
Target Start/End: Complemental strand, 15555174 - 15555126
Alignment:
Q  625 actattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    ||||||||||| |||||||||||||| |||||||| |||||| ||||||    
T  15555174 actattttcaaaatatcaacattaatgtagtgtttttattaagtatttt 15555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 707
Target Start/End: Original strand, 31794770 - 31794860
Alignment:
Q  620 tcataactattttcaacatatcaacattaatttagtgtttctattaaatattt---tgattttatatggaaaacaacgtcaaatatttgca 707  Q
    |||| ||||| ||||| ||||| |||||||| ||||||||| ||||| | |||   | ||||||||||||||||||||| || ||||||||    
T  31794770 tcatgactatattcaaaatatcgacattaatgtagtgtttcaattaattttttattttattttatatggaaaacaacgttaactatttgca 31794860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 667
Target Start/End: Complemental strand, 15555988 - 15555933
Alignment:
Q  612 ttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 667  Q
    |||| ||||| |||||||||| || ||||||||| |||| ||||||||||||||||    
T  15555988 ttgagaactcgtaactattttgaaaatatcaacactaatgtagtgtttctattaaa 15555933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 666
Target Start/End: Complemental strand, 15556338 - 15556292
Alignment:
Q  620 tcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    |||| ||||||||||| |||||||||||||| | |||||||||||||    
T  15556338 tcatgactattttcaaaatatcaacattaatgttgtgtttctattaa 15556292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 15558868 - 15558795
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||| ||| ||| ||||| |||| ||| |||| || ||||||||||||||||||||||| || ||||||||||    
T  15558868 atatgataaaatttagaaaattcatgactgtttttaaaatatcaacattaatttagtgtttata-taaatatttt 15558795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 34913635 - 34913708
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattt 672  Q
    |||||| ||| |||| ||||| ||  ||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  34913635 atatgataaaattttaaaaacccaagactatttacaaaatatcaacattaatttattgtttctattaaatattt 34913708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 25699345 - 25699301
Alignment:
Q  637 atatcaacattaatttagtgtttctattaaatattttgattttat 681  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  25699345 atatcaacattaatatagtgtttctattaaatatttttattttat 25699301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 13004108 - 13004036
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatttt 673  Q
    |||||| ||| |||| ||||||||||| |||||||| |||||||  |||||| || |||||||||||||||||||    
T  13004108 atatgataaaattttaaaaactcataagtattttcagcatatca--attaatataatgtttctattaaatatttt 13004036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 705
Target Start/End: Original strand, 42498982 - 42499089
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtca 697  Q
    |||||| ||| |||| |||| || ||||||||||||| |||||| ||||||| || || |||||||||||| |||| |||||||||  |||| | ||| |    
T  42498982 atatgataaaattttaaaaattcgtaactattttcaaaatatcatcattaatataatgattctattaaatattttttattttatatacaaaatatcgtaa 42499081  T
Q  698 aatatttg 705  Q
    ||||||||    
T  42499082 aatatttg 42499089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 707
Target Start/End: Original strand, 36648068 - 36648177
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatatt-ttgattttatatggaaaacaacgtca 697  Q
    |||||| ||| |||| |||||| |  ||||||||||| |||||||||||||| |||  |||||||||||||||  | |||||| ||| |||||| |||      
T  36648068 atatgataaaattttaaaaacttacgactattttcaaaatatcaacattaatatagaatttctattaaatattccttattttacatgcaaaacaccgttg 36648167  T
Q  698 aatatttgca 707  Q
    ||||||||||    
T  36648168 aatatttgca 36648177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 679
Target Start/End: Original strand, 6128112 - 6128176
Alignment:
Q  615 aaaactcataactattttcaacatatcaacattaatttagtgtttctattaaatattttgatttt 679  Q
    ||||||||| ||||||||||| | |||||||| | | |||||||| |||||||||||||| ||||    
T  6128112 aaaactcatgactattttcaaaacatcaacatcagtgtagtgtttttattaaatattttgttttt 6128176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 666
Target Start/End: Complemental strand, 25699748 - 25699650
Alignment:
Q  568 tatatatgaagaatcaatttttcatatatccatatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaa 666  Q
    ||||| || |||| |||||||| || |||| |||||| ||| |||| |||||| || |||||||| | |||  || ||||||| |||||||||||||||    
T  25699748 tatatctggagaagcaattttttatgtatcgatatgataaaattttaaaaacttatgactatttttatcatgccatcattaatgtagtgtttctattaa 25699650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 667
Target Start/End: Original strand, 34913778 - 34913835
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaa 667  Q
    ||||||| ||||| |||||||||||  ||||||| ||||||||| ||| |||||||||    
T  34913778 ttttgaacactcacaactattttcagaatatcaatattaatttaatgtctctattaaa 34913835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 684
Target Start/End: Complemental strand, 654 - 584
Alignment:
Q  616 aaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatg 684  Q
    ||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||  |||| ||||||||||    
T  654 aaactaatgactattttcaaaatataaacattaatgtagtgtttctattaaataactttttattttatatg 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 320 - 251
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata 669  Q
    |||||| ||| |||||||||||| | |||||||||||  | ||||||||||| ||||||||||||||||||    
T  320 atatgataaaattttgaaaactcgtgactattttcaaact-tcaacattaatatagtgtttctattaaata 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 683
Target Start/End: Complemental strand, 466 - 406
Alignment:
Q  625 actattttcaacatatcaacattaatttagtgtttctattaaat--attttgattttatat 683  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||  ||||| |||||||||    
T  466 actattttcaaaatatcaacattaatgtagtgtgtctattgaataaatttttattttatat 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 704
Target Start/End: Original strand, 77439 - 77534
Alignment:
Q  610 ttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata-ttttgattttatatggaaaacaacgtcaaatattt 704  Q
    |||| ||||||||| |||| ||| || |||||||||||||| || ||||| ||||||||| |||| |||||||||| ||||||  || ||||||||    
T  77439 ttttaaaaactcatgactacttttaaaatatcaacattaatgtaatgtttttattaaatattttttattttatatgcaaaacattgtaaaatattt 77534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 707
Target Start/End: Original strand, 1121 - 1231
Alignment:
Q  599 atatgagaaagttttgaaaactcataactattttcaacatatcaacattaatttagtgtttctattaaata--ttttgattttatatggaaaacaacgtc 696  Q
    |||||| ||| | |||||||||||| |   ||||||| ||||| || ||||| ||||||||||||||||||  |||| |||||||||  |||| | |||     
T  1121 atatgataaaatattgaaaactcatgatcgttttcaaaatatctaccttaatctagtgtttctattaaataagtttttattttatattaaaaatatcgtt 1220  T
Q  697 aaatatttgca 707  Q
    |||||||||||    
T  1221 aaatatttgca 1231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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