View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12579_low_12 (Length: 427)
Name: NF12579_low_12
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 56232878 - 56232466
Alignment:
| Q |
15 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56232878 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
56232779 |
T |
|
| Q |
115 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgtcccttgtcctagct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
56232778 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttgtgagtgttgtcccttgtcctagct |
56232679 |
T |
|
| Q |
215 |
gaaagaaaacacatcatattatcagatagagtaattctcaatgaatcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56232678 |
gaaagaaaacacatcatattatcagatagagtaattctcaatgaatcatatcataattccatgagtaacctaacggtgttaggtaacttaccagttgtca |
56232579 |
T |
|
| Q |
315 |
tgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccaga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56232578 |
tgattgcagatttaatagcggatggactccagttggggtggagagtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccaga |
56232479 |
T |
|
| Q |
415 |
catggtaatgaaa |
427 |
Q |
| |
|
||||||||||||| |
|
|
| T |
56232478 |
catggtaatgaaa |
56232466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 39190823 - 39190602
Alignment:
| Q |
17 |
gagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggcac |
116 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
39190823 |
gagaacatgctaatttgtgtttggttataacctaagaaacaaagaaagtttatgtaatcattgatgtttaactcatacaccaaaccaggatccatggcac |
39190724 |
T |
|
| Q |
117 |
gatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgtcccttgtcctagctga |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
39190723 |
gatttggtcttatgtgaccagaaccgtagtcaaatggtgttgccttgacattaatatcatcaacgataggtttaacagtgttgtcccttgtcctagctga |
39190624 |
T |
|
| Q |
217 |
aagaaaacacatcatattatca |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39190623 |
aagaaaacacatcatattatca |
39190602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 259 - 427
Target Start/End: Complemental strand, 39190449 - 39190281
Alignment:
| Q |
259 |
atcatataataattccatgagtaacctaacggtgttaggtaacttaccagttgtcatgattgcagatttaatagcggatggactccagttggggtggaga |
358 |
Q |
| |
|
||||||| || ||| ||||||||| |||| | ||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
39190449 |
atcatatcatcatttcatgagtaatctaatgatgttacattacttaccagttgtcatgattgcagatttaatagctgatggactccaggtggggtggaga |
39190350 |
T |
|
| Q |
359 |
gtcttaagaaggccaacaactccagccacatgaggacatgacatggatgttccagacatggtaatgaaa |
427 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
39190349 |
gtcttaagaaggccaacgactccagccacatgagggcatgacatggatgttccagacattgtcatgaaa |
39190281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University