View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_15 (Length: 421)
Name: NF12579_low_15
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 11491355 - 11491742
Alignment:
| Q |
18 |
aaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagaggaaaaagagaagaagcatacatgac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491355 |
aaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagaggaaaaagagaagaagcatacatgac |
11491454 |
T |
|
| Q |
118 |
acaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491455 |
acaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgc |
11491554 |
T |
|
| Q |
218 |
aacagacacaaacacaacaaaatgagatttctcctatgttgtgcttggtttttccaatcggttctacaattcctgataaagagaaacttgagaagatgcg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491555 |
aacagacacaaacacaacaaaatgagatttctcctatgttgtgcttgcttttttcaatcggttctacaattcctgataaagagaaacttgagaagatgcg |
11491654 |
T |
|
| Q |
318 |
cgacttattggcaaaagaacttcgacgctagagcttcagcacagctaattacatttatgcttcgtatttagtccaataaaaaagttca |
405 |
Q |
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| T |
11491655 |
cgacttattggcaaaagaacttcgacgctagagcttcagcacatctaattacatttatgcttcgtatttagtccaataaaaaagttca |
11491742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 38166632 - 38166904
Alignment:
| Q |
22 |
actccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagagg---aaaaagagaagaagcatacatgaca |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || || |||| |
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| T |
38166632 |
actccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgaca |
38166731 |
T |
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| Q |
119 |
caaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaat |
215 |
Q |
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|||||||||||||||||| |||| | || ||| ||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||||||||| |
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| T |
38166732 |
caaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaat |
38166831 |
T |
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| Q |
216 |
gcaacagacacaaacacaacaaaatgagatttctcctatgttgtgcttggtttttccaatcggttctacaattcct |
291 |
Q |
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| T |
38166832 |
gcaacagacacaaacacaacagaatgagatttctcctatgttgtgcttg---ctgccaatcagttctacaattcct |
38166904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 38173248 - 38172976
Alignment:
| Q |
22 |
actccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagagg---aaaaagagaagaagcatacatgaca |
118 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || || |||| |
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| T |
38173248 |
actccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgaca |
38173149 |
T |
|
| Q |
119 |
caaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaat |
215 |
Q |
| |
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|||||||||||||||||| |||| | || ||| ||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||||||||| |
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| T |
38173148 |
caaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaat |
38173049 |
T |
|
| Q |
216 |
gcaacagacacaaacacaacaaaatgagatttctcctatgttgtgcttggtttttccaatcggttctacaattcct |
291 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
38173048 |
gcaacagacacaaacacaacagaatgagatttctcctatgttgtgcttg---ctgccaatcagttctacaattcct |
38172976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 38200472 - 38200200
Alignment:
| Q |
22 |
actccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagagg---aaaaagagaagaagcatacatgaca |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || || |||| |
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| T |
38200472 |
actccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgaca |
38200373 |
T |
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| Q |
119 |
caaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaat |
215 |
Q |
| |
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|||||||||||||||||| |||| | || ||| ||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||||||||| |
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| T |
38200372 |
caaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaat |
38200273 |
T |
|
| Q |
216 |
gcaacagacacaaacacaacaaaatgagatttctcctatgttgtgcttggtttttccaatcggttctacaattcct |
291 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
38200272 |
gcaacagacacaaacacaacagaatgagatttctcctatgttgtgcttg---ctgccaatcagttctacaattcct |
38200200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 11484510 - 11484656
Alignment:
| Q |
22 |
actccaattcaaattgctagccatgcccaaaaatactttat---ccaccaaaatgtgaaagatatagagaagaggaaaaagagaagaagcatacatgaca |
118 |
Q |
| |
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||||||| |||||||||||| ||||| |||||||||||| | |||||||| || ||||| |||||||||| ||||||||||||||| || || |||| |
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| T |
11484510 |
actccaactcaaattgctagtcatgctcaaaaatactttgttcaccaccaaactgccaaagaaatagagaagaagaaaaagagaagaagtattcacgaca |
11484609 |
T |
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| Q |
119 |
caaccttaaacaagaatggcacactagtcactctcgctgttgaacaa |
165 |
Q |
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|||||||||||| |||| |||| |||||||| || || |||||||| |
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| T |
11484610 |
taaccttaaacaataatgacacaatagtcactgtccctcttgaacaa |
11484656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 38167030 - 38167099
Alignment:
| Q |
270 |
tccaatcggttctacaattcctgataaagagaaacttgagaagatgcgcgacttattggcaaaagaactt |
339 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||||||||||| |
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| T |
38167030 |
tccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactt |
38167099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 38172850 - 38172781
Alignment:
| Q |
270 |
tccaatcggttctacaattcctgataaagagaaacttgagaagatgcgcgacttattggcaaaagaactt |
339 |
Q |
| |
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|||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||||||||||| |
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| T |
38172850 |
tccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactt |
38172781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 38200074 - 38200005
Alignment:
| Q |
270 |
tccaatcggttctacaattcctgataaagagaaacttgagaagatgcgcgacttattggcaaaagaactt |
339 |
Q |
| |
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|||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||||||||||| |
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| T |
38200074 |
tccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactt |
38200005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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