View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_16 (Length: 414)

Name: NF12579_low_16
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_16
NF12579_low_16
[»] chr7 (3 HSPs)
chr7 (17-398)||(28592445-28592827)
chr7 (20-92)||(22851365-22851437)
chr7 (50-106)||(44895241-44895297)
[»] chr3 (3 HSPs)
chr3 (45-106)||(15086003-15086064)
chr3 (23-106)||(49321967-49322050)
chr3 (45-102)||(15267089-15267146)
[»] chr1 (1 HSPs)
chr1 (25-106)||(15741402-15741483)
[»] chr5 (2 HSPs)
chr5 (17-104)||(702909-702997)
chr5 (55-106)||(28096150-28096201)
[»] chr4 (2 HSPs)
chr4 (43-106)||(20135537-20135599)
chr4 (17-90)||(29540741-29540814)
[»] chr2 (2 HSPs)
chr2 (47-88)||(37740758-37740799)
chr2 (47-98)||(42963287-42963338)
[»] scaffold0758 (1 HSPs)
scaffold0758 (64-106)||(4850-4892)
[»] chr6 (3 HSPs)
chr6 (45-106)||(2576154-2576215)
chr6 (68-106)||(26590268-26590306)
chr6 (34-106)||(26260271-26260342)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 28592445 - 28592827
Alignment:
Q  17 acatcaatatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592445 acatcaatatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatc 28592544  T
Q  117 tatcactattcgaagactattatattcctttaaagacaannnnnnn-gttagc-tcatatcggtacgaagtttctaccgtcgtttaatattgaatctccg 214  Q
    |||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28592545 tatcactattcgaagactattatattcctttaaagacaattttttttgttagcatcatatcggtacgaagtttctaccgtcgtttaatattgaatctccg 28592644  T
Q  215 ttgaggaacttgtagggcacataaggtgggttctcccctatcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgagaggat 314  Q
    ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28592645 ttggggaacttgcagggcacataaggtgggttctcccctctcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgaga-gat 28592743  T
Q  315 aaatagaaaagttgttgtagagcaaaagggggaagtaatttaagaataacatttaaactagacataagaaatgtaaaaacaatc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28592744 aaatagaaaagttgttgtagagcaaaagggggaagtaatttaagaataacatttaaactagaaataagaaatgtaaaaacaatc 28592827  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 22851365 - 22851437
Alignment:
Q  20 tcaatatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatt 92  Q
    ||||||||||||  || || |||| |||||||||||||||||| || |||||| || ||||||||||||||||    
T  22851365 tcaatatttgacatataaaaaatattatcattgtcattgatgggatcgtcatcttttaaattttcattagatt 22851437  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 44895297 - 44895241
Alignment:
Q  50 ttgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    ||||||||||||  ||| |||||||||||| |||||||| ||| ||||||| |||||    
T  44895297 ttgtcattgatgagattatcatcattcaaaatttcattatattgttcaagagtatct 44895241  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 15086003 - 15086064
Alignment:
Q  45 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  15086003 tatcattgtcattgatgggattgtcatcattcaaattttcattagattgttcaagattatct 15086064  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 49322050 - 49321967
Alignment:
Q  23 atatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||| ||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||| | |||||| ||||||    
T  49322050 atatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaaggttatct 49321967  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 15267089 - 15267146
Alignment:
Q  45 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagatt 102  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  15267089 tatcattgtcattgatgagattgtcatcattcaaattttcattagattgttcaagatt 15267146  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 15741483 - 15741402
Alignment:
Q  25 atttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||| |||||||||||||||||||  ||||| |||  ||||||||||||||||||||||||||||| |||||||||||||    
T  15741483 atttgaggcatcaagaataatatcatgatcattaatgagattgtcatcattcaaattttcattagattgttcaagattatct 15741402  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 702997 - 702909
Alignment:
Q  17 acatcaatatttgacgcatca-agaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattat 104  Q
    ||||||| |||||||||||||  ||  | |||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||||    
T  702997 acatcaacatttgacgcatcatggagcattatcattgtcattgatgagattgtcatcattcgaattttcattagattgttcaagattat 702909  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 28096201 - 28096150
Alignment:
Q  55 attgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  28096201 attgatgggattgtcatcattccaattttcattagattgttcaagattatct 28096150  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 20135599 - 20135537
Alignment:
Q  43 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  20135599 aatatcatggtcattaatgaaattgtcatcattcaaatttt-attagattcttcaagattatct 20135537  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 29540741 - 29540814
Alignment:
Q  17 acatcaatatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattaga 90  Q
    ||||||| |||||| |||||||||| |||||| | ||||| ||||| ||||||||| ||||| |||||||||||    
T  29540741 acatcaacatttgatgcatcaagaacaatatcgtagtcatggatgggattgtcatcgttcaatttttcattaga 29540814  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 37740758 - 37740799
Alignment:
Q  47 tcattgtcattgatggaattgtcatcattcaaattttcatta 88  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  37740758 tcattgtcattgatgggattgtcatcattcaaattttcatta 37740799  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 42963287 - 42963338
Alignment:
Q  47 tcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaa 98  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  42963287 tcattgtcattgatgggattgtaaacattcaaatttttattagattgttcaa 42963338  T

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Target: scaffold0758 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 4892 - 4850
Alignment:
Q  64 attgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  4892 attgtcatcatttaaattttcattagattgttcaagattatct 4850  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 2576154 - 2576215
Alignment:
Q  45 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    ||||||| ||||||||   |||| |||||||| ||||||||||||||| |||||||||||||    
T  2576154 tatcattttcattgatatgattgccatcattccaattttcattagattgttcaagattatct 2576215  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 26590306 - 26590268
Alignment:
Q  68 tcatcattcaaattttcattagatttttcaagattatct 106  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  26590306 tcatcattccaattttcattagattgttcaagattatct 26590268  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 26260342 - 26260271
Alignment:
Q  34 atcaagaataatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 106  Q
    |||||||| | ||||||| |||||||||  |||||||||||||||| ||| ||| |||| ||| |||||||||    
T  26260342 atcaagaacattatcattatcattgatgagattgtcatcattcaaaattttattcgattgttc-agattatct 26260271  T

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