View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_18 (Length: 405)
Name: NF12579_low_18
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 45713250 - 45713623
Alignment:
| Q |
16 |
ttcactgcaactgttcttccatttggtaaagtggccttgtacacagttccgaaacctccatctccaattatgtttgtcttgctgaaattctcagtagctt |
115 |
Q |
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| T |
45713250 |
ttcacagcaactgttcttccatttggtaaagtggccttgtacacagttccgaaacctccatctccaattatgtttgtcttgctgaaattctcagtagctt |
45713349 |
T |
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| Q |
116 |
tgaggatatcaactaaagttaatttcagaagaggctgctcaaacattgctacattgatactcaaaggttcctttgatctgctactgctcaagaagtaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45713350 |
tgaggatatcaactaaagttaatttcagaagaggctgctcaaacattgctacattgatactcaaaggttcctttgatctgctactgctcaagaagtaaag |
45713449 |
T |
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| Q |
216 |
attctgatcaacataactgttaagtttccgatcctccaggtcctcaggatcattttgcttcctgctgatccatctatgcagcgcaaaagcaaagatcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45713450 |
attctgatcaacataactgttaagtttccgatcctccaggtcctcaggatcattttgcttcctgctgatccatctatgcagcacaaaagcaaagatcaag |
45713549 |
T |
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| Q |
316 |
gttactaatatgactgcgatggcaattccaccaagcctccatacattaaacaatgaatatctaccaatgctttt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45713550 |
gttactaatatgactgcgatggcaattccaccaagcctccatacattaaacaatgaatatctaccaatgctttt |
45713623 |
T |
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