View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_19 (Length: 403)
Name: NF12579_low_19
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 45667274 - 45666899
Alignment:
| Q |
16 |
actaagaagtgcaaaaatgtataaatgaagaaccaatcaattgcagaaacacagaaacatgcttttatcaattttgtaccttagttccaccgttgactgt |
115 |
Q |
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| T |
45667274 |
actaagaagtgcaaaaatgtataaatgaagaaccaattaattgcagaaacacagaaacatgcttttatcaattttgtaccttagttccaccgttgactgt |
45667175 |
T |
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| Q |
116 |
tgcagttgcagaaacaagctattttggatactaatcatttgttttttaagttgttttcctaaatgtgcctccttcttatctcaggtctcaaagatattgc |
215 |
Q |
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| T |
45667174 |
tgcagttgcagaaacaagctattttggatactaatcatttgttttttaagttgttttcctaaatgtgcctccttcttatctcaggtctcaaagatattgc |
45667075 |
T |
|
| Q |
216 |
ggattttcttccagcatctttggcaactattgtaagctacttatcagctgaagtaacacgtggtgtgtggaagccagcttttatgaacggaactgattgg |
315 |
Q |
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| T |
45667074 |
ggattttcttccagcatctttggcaactattgtaagctacttatcagctgaagtaacacgtggtgtgtggaagccagcttttatgaacggaactgattgg |
45666975 |
T |
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| Q |
316 |
cctagtcctgcagctaatttatccattgttgagcaacaaatcnnnnnnnttctggcagccactggtgttgatgtcc |
391 |
Q |
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| T |
45666974 |
cctagtcctgcagctaatttatccattgtcgagcaacaaatcaaaaaaattctggcagccactggggttgatgtcc |
45666899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 7288608 - 7288717
Alignment:
| Q |
217 |
gattttcttccagcatctttggcaactattgtaagctacttatcagctgaagtaacacgtggtgtgtggaagccagcttttatgaacggaactgattggc |
316 |
Q |
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| T |
7288608 |
gattttcttcccgcatctctggcaaccataataagttacttttctgctgaagtaactcgaggagtttggaaaccagcatttatgaatggaactgattggc |
7288707 |
T |
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| Q |
317 |
ctagtcctgc |
326 |
Q |
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| T |
7288708 |
caagtcctgc |
7288717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 37650494 - 37650630
Alignment:
| Q |
217 |
gattttcttccagcatctttggcaactattgtaagctacttatcagctgaagtaacacgtggtgtgtggaagccagcttttatgaacggaactgattggc |
316 |
Q |
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|||||| ||||||||||||||| | |||| ||||||||| ||||||||||| ||| | || | |||||||||| || ||||| ||||||||||||| |
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| T |
37650494 |
gattttattccagcatctttggttgccattgcaagctacttttcagctgaagttacaaggggcatatggaagccagtattcatgaatggaactgattggc |
37650593 |
T |
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| Q |
317 |
ctagtcctgcagctaatttatccattgttgagcaaca |
353 |
Q |
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| T |
37650594 |
ctagccctgctgcaaatttatcccttgttgaacaaca |
37650630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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