View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_2 (Length: 727)

Name: NF12579_low_2
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_2
NF12579_low_2
[»] chr1 (50 HSPs)
chr1 (18-360)||(30043501-30043845)
chr1 (573-711)||(30043854-30043992)
chr1 (482-552)||(41195187-41195256)
chr1 (442-565)||(49938741-49938866)
chr1 (484-621)||(24915046-24915182)
chr1 (481-557)||(51688707-51688782)
chr1 (507-557)||(7137016-7137066)
chr1 (117-171)||(37047003-37047057)
chr1 (122-191)||(20999300-20999368)
chr1 (507-554)||(12564517-12564564)
chr1 (507-615)||(34952160-34952267)
chr1 (80-159)||(47360481-47360559)
chr1 (120-186)||(15581148-15581214)
chr1 (507-557)||(26779943-26779993)
chr1 (507-557)||(34290238-34290288)
chr1 (507-557)||(37842373-37842423)
chr1 (117-167)||(39964527-39964577)
chr1 (502-552)||(45975697-45975747)
chr1 (502-552)||(51695508-51695558)
chr1 (480-557)||(17603375-17603452)
chr1 (117-186)||(24857834-24857903)
chr1 (502-555)||(49888771-49888824)
chr1 (480-557)||(51929530-51929607)
chr1 (484-544)||(37473418-37473478)
chr1 (480-544)||(37631550-37631614)
chr1 (481-557)||(42174857-42174933)
chr1 (117-161)||(44417465-44417509)
chr1 (502-557)||(7218087-7218142)
chr1 (502-557)||(11893200-11893255)
chr1 (187-222)||(40357995-40358030)
chr1 (507-557)||(7472313-7472363)
chr1 (577-615)||(9507087-9507125)
chr1 (507-557)||(10809347-10809397)
chr1 (507-557)||(25479583-25479633)
chr1 (502-552)||(27820350-27820400)
chr1 (502-552)||(35058445-35058495)
chr1 (511-557)||(38116100-38116146)
chr1 (507-557)||(38503483-38503533)
chr1 (124-170)||(41470621-41470667)
chr1 (507-561)||(43332482-43332536)
chr1 (512-553)||(1432521-1432562)
chr1 (484-557)||(3234010-3234083)
chr1 (190-227)||(13037793-13037830)
chr1 (120-169)||(18928352-18928401)
chr1 (190-227)||(23895265-23895302)
chr1 (480-557)||(30286510-30286587)
chr1 (480-564)||(36872262-36872344)
chr1 (488-557)||(43230769-43230838)
chr1 (124-169)||(45232081-45232126)
chr1 (574-623)||(47432033-47432082)
[»] chr3 (42 HSPs)
chr3 (480-624)||(53789452-53789595)
chr3 (489-624)||(18405831-18405966)
chr3 (480-557)||(21367669-21367746)
chr3 (480-552)||(3845554-3845625)
chr3 (502-556)||(26990504-26990558)
chr3 (120-186)||(34844374-34844440)
chr3 (120-186)||(42799754-42799820)
chr3 (480-557)||(30443895-30443972)
chr3 (522-624)||(30956659-30956760)
chr3 (522-624)||(30972471-30972572)
chr3 (480-557)||(39980731-39980808)
chr3 (442-552)||(46778142-46778253)
chr3 (480-552)||(20880483-20880555)
chr3 (507-656)||(39602228-39602369)
chr3 (192-227)||(2304345-2304380)
chr3 (502-557)||(44747421-44747476)
chr3 (510-552)||(2719475-2719517)
chr3 (120-186)||(10682950-10683016)
chr3 (519-557)||(22203432-22203470)
chr3 (507-557)||(36887506-36887556)
chr3 (512-615)||(44061046-44061148)
chr3 (117-167)||(53167795-53167845)
chr3 (480-557)||(402533-402610)
chr3 (502-550)||(466202-466250)
chr3 (507-559)||(2825147-2825199)
chr3 (481-557)||(36631043-36631119)
chr3 (117-181)||(43303766-43303830)
chr3 (502-553)||(901930-901981)
chr3 (119-166)||(26158834-26158881)
chr3 (507-554)||(33883768-33883815)
chr3 (117-171)||(44069776-44069831)
chr3 (481-557)||(46478689-46478767)
chr3 (502-557)||(50600191-50600246)
chr3 (629-659)||(3845736-3845766)
chr3 (507-557)||(34610824-34610874)
chr3 (120-186)||(53863874-53863940)
chr3 (512-549)||(584056-584093)
chr3 (502-559)||(2128271-2128328)
chr3 (120-189)||(15034345-15034414)
chr3 (124-169)||(35623277-35623322)
chr3 (507-552)||(37273141-37273186)
chr3 (190-227)||(41028955-41028992)
[»] chr7 (40 HSPs)
chr7 (480-565)||(17944334-17944419)
chr7 (480-557)||(33601401-33601477)
chr7 (480-545)||(33602018-33602083)
chr7 (480-557)||(38499904-38499981)
chr7 (117-186)||(5579237-5579307)
chr7 (484-553)||(11619153-11619222)
chr7 (480-565)||(40377843-40377928)
chr7 (97-171)||(13585657-13585731)
chr7 (124-166)||(21050151-21050193)
chr7 (507-557)||(43648242-43648292)
chr7 (507-557)||(47130803-47130853)
chr7 (511-557)||(48917368-48917414)
chr7 (443-553)||(21568447-21568559)
chr7 (484-557)||(34744030-34744103)
chr7 (480-557)||(48470046-48470123)
chr7 (481-557)||(5947186-5947262)
chr7 (505-557)||(14696405-14696456)
chr7 (116-172)||(33128540-33128596)
chr7 (485-552)||(48507729-48507797)
chr7 (120-171)||(8677578-8677629)
chr7 (505-552)||(9050642-9050689)
chr7 (187-222)||(27481403-27481438)
chr7 (480-535)||(30570922-30570977)
chr7 (510-565)||(40252128-40252183)
chr7 (502-557)||(46280285-46280340)
chr7 (574-620)||(119850-119896)
chr7 (188-230)||(7087481-7087523)
chr7 (507-557)||(18965728-18965778)
chr7 (507-557)||(20881654-20881704)
chr7 (124-186)||(21035179-21035241)
chr7 (629-659)||(28210321-28210351)
chr7 (507-545)||(39280983-39281021)
chr7 (629-659)||(45593414-45593444)
chr7 (519-565)||(46139926-46139972)
chr7 (507-552)||(7244687-7244732)
chr7 (484-557)||(19022580-19022653)
chr7 (117-186)||(35328878-35328947)
chr7 (480-557)||(39967922-39967999)
chr7 (484-557)||(45790421-45790493)
chr7 (190-231)||(46213732-46213773)
[»] chr4 (47 HSPs)
chr4 (480-557)||(17822856-17822933)
chr4 (442-565)||(54426037-54426162)
chr4 (480-615)||(55414411-55414545)
chr4 (96-181)||(25434643-25434725)
chr4 (117-186)||(38206129-38206198)
chr4 (480-556)||(30668358-30668433)
chr4 (502-557)||(2996575-2996630)
chr4 (445-557)||(39603124-39603238)
chr4 (480-557)||(41512653-41512730)
chr4 (480-557)||(55302251-55302328)
chr4 (487-624)||(50681087-50681223)
chr4 (117-168)||(4686131-4686182)
chr4 (480-543)||(13126567-13126630)
chr4 (117-168)||(25414218-25414269)
chr4 (482-552)||(24169270-24169340)
chr4 (120-190)||(37980154-37980224)
chr4 (480-557)||(21731647-21731724)
chr4 (480-557)||(40831021-40831097)
chr4 (117-170)||(42281237-42281290)
chr4 (507-551)||(825508-825552)
chr4 (444-545)||(25904176-25904279)
chr4 (187-231)||(55994287-55994331)
chr4 (506-557)||(16199998-16200049)
chr4 (127-186)||(29195098-29195157)
chr4 (120-171)||(56409969-56410020)
chr4 (502-556)||(4798579-4798633)
chr4 (189-231)||(24936238-24936280)
chr4 (507-565)||(29912942-29913000)
chr4 (194-224)||(36823938-36823968)
chr4 (120-178)||(47183333-47183391)
chr4 (507-557)||(47800625-47800675)
chr4 (629-659)||(49803098-49803128)
chr4 (507-557)||(52734805-52734855)
chr4 (480-552)||(1407963-1408036)
chr4 (512-557)||(2111073-2111118)
chr4 (480-545)||(2244065-2244130)
chr4 (190-227)||(2980575-2980612)
chr4 (574-615)||(3155548-3155589)
chr4 (190-227)||(4191668-4191705)
chr4 (190-227)||(7749186-7749223)
chr4 (480-557)||(35571622-35571699)
chr4 (508-557)||(42121490-42121539)
chr4 (636-665)||(47399403-47399432)
chr4 (190-227)||(47970247-47970284)
chr4 (507-552)||(50004162-50004207)
chr4 (507-552)||(53673676-53673721)
chr4 (508-557)||(55084500-55084549)
[»] chr6 (25 HSPs)
chr6 (480-556)||(9763563-9763639)
chr6 (480-565)||(34430452-34430537)
chr6 (507-551)||(835267-835311)
chr6 (509-620)||(6909892-6910003)
chr6 (507-546)||(31813174-31813213)
chr6 (507-557)||(837234-837284)
chr6 (120-190)||(6691557-6691627)
chr6 (507-565)||(26694872-26694930)
chr6 (124-181)||(3869704-3869761)
chr6 (508-557)||(20368199-20368248)
chr6 (530-624)||(24626231-24626324)
chr6 (480-557)||(24982707-24982784)
chr6 (512-557)||(31812036-31812081)
chr6 (120-167)||(6384009-6384056)
chr6 (97-184)||(27869695-27869781)
chr6 (187-226)||(31420884-31420923)
chr6 (193-227)||(2514634-2514668)
chr6 (483-557)||(2735071-2735145)
chr6 (529-559)||(10476161-10476191)
chr6 (507-557)||(13907587-13907637)
chr6 (190-231)||(10452460-10452501)
chr6 (190-231)||(29249403-29249444)
chr6 (480-557)||(31624092-31624168)
chr6 (190-227)||(31668789-31668826)
chr6 (190-227)||(34405034-34405071)
[»] chr2 (46 HSPs)
chr2 (450-557)||(41851537-41851646)
chr2 (502-624)||(41241145-41241266)
chr2 (484-553)||(45229517-45229586)
chr2 (502-623)||(12464486-12464606)
chr2 (480-557)||(43279520-43279597)
chr2 (482-552)||(33319807-33319875)
chr2 (484-557)||(26202030-26202103)
chr2 (507-559)||(26143658-26143710)
chr2 (482-557)||(1625902-1625977)
chr2 (483-541)||(33981140-33981198)
chr2 (507-557)||(40279199-40279249)
chr2 (507-557)||(40279269-40279319)
chr2 (507-557)||(40279339-40279389)
chr2 (507-557)||(40279409-40279459)
chr2 (507-557)||(43985021-43985071)
chr2 (480-557)||(18066130-18066207)
chr2 (117-186)||(18825344-18825413)
chr2 (482-624)||(32592523-32592663)
chr2 (507-552)||(35379034-35379079)
chr2 (507-548)||(42457959-42458000)
chr2 (187-227)||(10150681-10150721)
chr2 (116-180)||(13747636-13747700)
chr2 (502-557)||(6772533-6772588)
chr2 (629-664)||(9174685-9174720)
chr2 (502-557)||(11513900-11513955)
chr2 (480-563)||(12289793-12289876)
chr2 (457-557)||(16451120-16451222)
chr2 (506-557)||(29510594-29510645)
chr2 (139-186)||(30359657-30359704)
chr2 (507-550)||(44443330-44443373)
chr2 (480-550)||(680512-680581)
chr2 (482-552)||(26626880-26626950)
chr2 (193-231)||(27237959-27237997)
chr2 (507-557)||(29316793-29316843)
chr2 (191-229)||(35755604-35755642)
chr2 (507-557)||(44590036-44590086)
chr2 (507-552)||(3611233-3611278)
chr2 (120-161)||(6099525-6099566)
chr2 (61-154)||(7250264-7250356)
chr2 (519-552)||(8017441-8017474)
chr2 (484-557)||(9174817-9174890)
chr2 (574-615)||(13220395-13220436)
chr2 (190-227)||(13864579-13864616)
chr2 (504-557)||(20952357-20952410)
chr2 (480-557)||(40158720-40158796)
chr2 (480-549)||(41812083-41812151)
[»] chr5 (39 HSPs)
chr5 (480-556)||(37954689-37954765)
chr5 (480-552)||(39105471-39105543)
chr5 (502-557)||(4014437-4014492)
chr5 (120-186)||(16172990-16173056)
chr5 (450-557)||(29925843-29925952)
chr5 (480-557)||(16937874-16937951)
chr5 (480-557)||(43300880-43300957)
chr5 (120-180)||(14656650-14656710)
chr5 (481-565)||(25461085-25461169)
chr5 (480-555)||(10639957-10640032)
chr5 (116-171)||(18351776-18351831)
chr5 (188-231)||(29588807-29588850)
chr5 (502-557)||(36318776-36318831)
chr5 (510-552)||(7319029-7319071)
chr5 (507-557)||(7907883-7907933)
chr5 (480-557)||(9202739-9202816)
chr5 (120-169)||(16247136-16247185)
chr5 (480-557)||(32703268-32703344)
chr5 (502-550)||(7984978-7985026)
chr5 (191-227)||(14714943-14714979)
chr5 (128-171)||(19373257-19373300)
chr5 (95-162)||(32340319-32340385)
chr5 (507-615)||(39594753-39594859)
chr5 (480-559)||(40426765-40426844)
chr5 (507-557)||(10272449-10272499)
chr5 (507-553)||(12242728-12242774)
chr5 (507-557)||(12425573-12425623)
chr5 (450-557)||(16457938-16458047)
chr5 (507-557)||(17368678-17368728)
chr5 (507-557)||(18543215-18543264)
chr5 (519-557)||(32942620-32942658)
chr5 (527-557)||(36145280-36145310)
chr5 (507-552)||(7674655-7674700)
chr5 (480-545)||(7705989-7706054)
chr5 (504-545)||(12857720-12857761)
chr5 (120-161)||(15485426-15485467)
chr5 (581-614)||(32544878-32544911)
chr5 (190-227)||(37611295-37611332)
chr5 (190-227)||(37788025-37788062)
[»] scaffold0050 (1 HSPs)
scaffold0050 (485-555)||(58746-58816)
[»] chr8 (29 HSPs)
chr8 (480-557)||(27028833-27028910)
chr8 (480-565)||(38648345-38648430)
chr8 (487-624)||(25930552-25930688)
chr8 (480-564)||(35534604-35534688)
chr8 (507-557)||(9956832-9956882)
chr8 (480-565)||(30251445-30251530)
chr8 (502-557)||(38874648-38874703)
chr8 (507-557)||(10114491-10114541)
chr8 (117-171)||(34778753-34778807)
chr8 (117-186)||(22268937-22269006)
chr8 (117-166)||(40136966-40137015)
chr8 (496-557)||(43504753-43504814)
chr8 (187-227)||(4558724-4558764)
chr8 (190-229)||(8536150-8536189)
chr8 (120-186)||(26688868-26688935)
chr8 (502-557)||(43717950-43718005)
chr8 (487-553)||(16347196-16347262)
chr8 (529-559)||(29891061-29891091)
chr8 (480-546)||(31716218-31716284)
chr8 (190-227)||(1433474-1433511)
chr8 (480-557)||(1930037-1930114)
chr8 (190-231)||(3645916-3645957)
chr8 (507-556)||(4762512-4762561)
chr8 (574-615)||(7646151-7646192)
chr8 (519-552)||(26215496-26215529)
chr8 (629-662)||(34236035-34236068)
chr8 (190-227)||(35534965-35535002)
chr8 (138-171)||(43533744-43533777)
chr8 (507-552)||(44236841-44236886)
[»] scaffold0221 (1 HSPs)
scaffold0221 (480-557)||(22233-22310)
[»] scaffold0024 (2 HSPs)
scaffold0024 (574-614)||(58883-58923)
scaffold0024 (574-615)||(21362-21403)
[»] scaffold0167 (1 HSPs)
scaffold0167 (527-557)||(17278-17308)
[»] scaffold0590 (1 HSPs)
scaffold0590 (190-227)||(1178-1215)
[»] scaffold0275 (1 HSPs)
scaffold0275 (190-227)||(2760-2797)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 30043501 - 30043845
Alignment:
Q  18 agaccaactaatatgagggaaccaatcctactgtctactagcaggggcccatttaaaaccaatatggactagcccttagaaattggcattgggaggattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30043501 agaccaactaatatgagggaaccaatcctactgtctactagcaggggctcatttaaaaccaatatggactagcccttagaaattggcattgggaggattt 30043600  T
Q  118 caaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtggattatataagtgattatgtataagctatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30043601 caaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgggttatataagtgattatgtataagctatttc 30043700  T
Q  218 tataataaaatatagtcgacatgttttcgcataagctataaacatttttcataagttatcctaaacagtatattgacatgtcataagttgttttcgtaga 317  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30043701 tataataaaatatagtcgacatgttttcacataagctataaacatttttcataggttatcctaaacagtatattgacatgtcataagttgttttcgtaga 30043800  T
Q  318 cattctcgcaagt--ttacgatggtagataagctcaaatcaatca 360  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||    
T  30043801 cattctcacaagtgattacgatggtagataagctcaaatcaatca 30043845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 573 - 711
Target Start/End: Original strand, 30043854 - 30043992
Alignment:
Q  573 gcaatttaacattattttaacttttcctatagaaatagcttatttaagcttaaagtctgcaaataagttgtttatccaaacagggccataataaagtatg 672  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30043854 gcaatttaacattattttatcttttcctatagaaatagcttatttaagcttaaagtctgaaaataagttgtttatccaaacagggccataataaagtatg 30043953  T
Q  673 cacctttatatttgaaggggacaacttgattgaatcatt 711  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30043954 cacctttatatttgaaggggacaacttgattgaatcatt 30043992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 482 - 552
Target Start/End: Original strand, 41195187 - 41195256
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| |||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  41195187 agcttatgaca-ttttaataagcttttttcagcttattttcataagttctccaagatagtttatgaaaaca 41195256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 442 - 565
Target Start/End: Complemental strand, 49938866 - 49938741
Alignment:
Q  442 ggcataaattttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagata 539  Q
    ||||||| |||||| |||  | ||||||||||||| | |  |||||||||||| |||| |  ||||||||||| |||| ||||||| |||||| || |||    
T  49938866 ggcataagttttgtgagattgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcttttttcaacttattttcataagttctctaatata 49938767  T
Q  540 gcttatgaaaacaacttacaacatat 565  Q
    |||||| ||||||||||| |||||||    
T  49938766 gcttataaaaacaacttataacatat 49938741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 621
Target Start/End: Original strand, 24915046 - 24915182
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaaca 583  Q
    ||||||||| |||| || ||||||||||| |||| ||||| | ||||||||||| |||||||||||||| |||| | |||||        |||||||||     
T  24915046 cttatgacatttttcataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaa-caatttaact 24915144  T
Q  584 ttattttaacttttcctatagaaatagcttatttaagc 621  Q
    |||||||| ||| | |||||||||||| |||| |||||    
T  24915145 ttattttatcttctgctatagaaatagtttatgtaagc 24915182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 51688782 - 51688707
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||||||| |  || ||||||||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  51688782 cagcttatgacacttttcagaagtttttttcagcttaatttcataag-tctccacgatagcttacgaaaacaactta 51688707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 7137016 - 7137066
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagctta 7137066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 37047057 - 37047003
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    |||||||||||||||||| || |||||||||||||||| |||||| |||||||||    
T  37047057 tcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccacca 37047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 20999300 - 20999368
Alignment:
Q  122 cctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtggattat 191  Q
    ||||||| ||||| | |||||||||||||| || |||||||||||||||| ||||||||| |||||||||    
T  20999300 cctgagatcttgagaaaagcacactccaagatc-caagcctacaccaccaggtcaacccaagtggattat 20999368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 554
Target Start/End: Original strand, 12564517 - 12564564
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaac 554  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaac 12564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 615
Target Start/End: Complemental strand, 34952267 - 34952160
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaa 606  Q
    ||||||||||| ||||||| ||||||   |||||||||||||||||||||||| | |||        ||||||||| |||||||||||| | || |||||    
T  34952267 ttttcagcttattttcataagttctctttgatagcttatgaaaacaacttacagcttattcgaaaa-caatttaactttattttaacttctgctctagaa 34952169  T
Q  607 atagcttat 615  Q
    |||||||||    
T  34952168 atagcttat 34952160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 47360481 - 47360559
Alignment:
Q  80 tatggactagcccttagaaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaag 159  Q
    |||||||||||||  |||||||| || |||||||||| | ||||||||| ||||| || |||||||||||||||| ||||    
T  47360481 tatggactagcccgcagaaattgacactgggaggatt-cgaacctgagatcttgagaggagcacactccaaggtcccaag 47360559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 15581148 - 15581214
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||||||||||| | || |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  15581148 aacctgagacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 15581214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 26779943 - 26779993
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| |||| ||||||| ||||| |||||||||||||||||||||||||    
T  26779943 ttttcaacttattttcataagttcttcaagatagcttatgaaaacaactta 26779993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 34290288 - 34290238
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||| ||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagctta 34290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 37842373 - 37842423
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||| ||| ||||| |||||||||||||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaacaactta 37842423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 39964577 - 39964527
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacacc 167  Q
    |||||||||||||||||| || |||||||||||||||| |||||| |||||    
T  39964577 tcaaacctgagaccttgagaggagcacactccaaggtcgcaagccaacacc 39964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 45975747 - 45975697
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| ||||||||||| |||||||  |||||||||||||||||||||||||    
T  45975747 agctgttttcagcttattttcataaattctccaagatagcttatgaaaaca 45975697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 51695508 - 51695558
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| ||||||||||| |||||||  |||||||||||||||||||||||||    
T  51695508 agctattttcagcttattttcataaattctccaagatagcttatgaaaaca 51695558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 17603375 - 17603452
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || | |||||| || |||| ||||| | ||||||||| ||||||||| |||||||||||    
T  17603375 acagcttatgacaattttcataaactttttacaacttattttcagaagttctccaatatagcttataaaaacaactta 17603452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 24857834 - 24857903
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||||||| ||||| |||||| |||||||||||| | |||| ||||||||| | ||||||| ||||    
T  24857834 tcaaacctgagagcttgagagaagcccactccaaggtccctagccaacaccaccaggccaacccaagtgg 24857903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 555
Target Start/End: Complemental strand, 49888824 - 49888771
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaact 555  Q
    |||| ||||| ||||| ||||||| |||||| ||||||||||||||||||||||    
T  49888824 agctattttcggcttattttcataagttctctaagatagcttatgaaaacaact 49888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 51929530 - 51929607
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || ||||||||||| |||| || |||| ||||||||| |||| |||| |||||| ||||    
T  51929530 acagcttatgacaattttcataagcttttttcaacttatttccataagttctccaatatagtttataaaaacagctta 51929607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 37473478 - 37473418
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagctta 544  Q
    ||||||||| |||| || |||||||| ||||||| ||||||| ||||||||||||| ||||    
T  37473478 cttatgacatttttcataagctttttccagcttattttcataagttctccaagataactta 37473418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 544
Target Start/End: Original strand, 37631550 - 37631614
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagctta 544  Q
    ||||||| ||||| |||| |  |||||||||||||||| ||||||| ||||||||| ||||||||    
T  37631550 acagcttctgacaattttcacaagcttttttcagcttattttcataagttctccaatatagctta 37631614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 42174933 - 42174857
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||| |||| || |||| |||| | |||| ||||||| ||||||||| ||| ||||| |||||||||||    
T  42174933 cagcttatgacaattttcataagctgtttttaacttattttcataagttctccaatataacttataaaaacaactta 42174857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 44417465 - 44417509
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcc 161  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  44417465 tcaaacctgagaccttgagagcagcacactccaaggtcccaagcc 44417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 7218087 - 7218142
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| |||||| |||| ||||||| |||||||| ||||| ||||||||||||||||    
T  7218087 agctgttttcaacttattttcataagttctccaggataggttatgaaaacaactta 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 11893255 - 11893200
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||| | ||||||  ||||| ||| |||||||||||||||||||||    
T  11893255 agcttttttcagctaattttcattagttcttcaacatagcttatgaaaacaactta 11893200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 40358030 - 40357995
Alignment:
Q  187 attatataagtgattatgtataagctatttctataa 222  Q
    ||||||||||||| ||||||||||||||||||||||    
T  40358030 attatataagtgactatgtataagctatttctataa 40357995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 7472363 - 7472313
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||| ||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagctta 7472313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 615
Target Start/End: Original strand, 9507087 - 9507125
Alignment:
Q  577 tttaacattattttaacttttcctatagaaatagcttat 615  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  9507087 tttaacattattttaacttttgttatagaaatagcttat 9507125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 10809397 - 10809347
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| ||||||||| |||||| |||| |||||||||    
T  10809397 ttttcagcttattttcataagttctccaatatagctgatgagaacaactta 10809347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 25479633 - 25479583
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| | |||| | ||||||||||||||||||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaactta 25479583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 27820350 - 27820400
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| ||||||||||| |||||||  |||||||||||||||||| ||||||    
T  27820350 agctattttcagcttattttcataaattctccaagatagcttataaaaaca 27820400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 35058445 - 35058495
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| ||||||||||| |||| || ||||||||||||||||| ||||||||    
T  35058445 agctgttttcagcttactttcgtaagttctccaagatagcttctgaaaaca 35058495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 38116100 - 38116146
Alignment:
Q  511 cagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||| ||||||| ||||||||||||| |||| ||||||||||||    
T  38116100 cagcttactttcataagttctccaagataacttaagaaaacaactta 38116146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 38503483 - 38503533
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| |||||||||||||||| |  |||||||||||    
T  38503483 ttttcagcttattttcataagttctccaagatagctaacaaaaacaactta 38503533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 41470621 - 41470667
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacaccacc 170  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||||    
T  41470621 tgagaccttgagaggagcatactccaaggtctcaagccaacaccacc 41470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 561
Target Start/End: Complemental strand, 43332536 - 43332482
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaac 561  Q
    ||||||||||| ||| ||| | ||| |||||||||||||||||||| ||||||||    
T  43332536 ttttcagcttattttaataagctcttcaagatagcttatgaaaacagcttacaac 43332482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 1432562 - 1432521
Alignment:
Q  512 agcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    |||||| ||||||| |||||||||||||| ||||||||||||    
T  1432562 agcttactttcataagttctccaagatagtttatgaaaacaa 1432521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 557
Target Start/End: Original strand, 3234010 - 3234083
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| ||| |||| || || |||||||  |||| ||||||| ||||||||| ||||||||| |||||||||||    
T  3234010 cttataacagttttcataagtttttttctacttattttcataagttctccaatatagcttataaaaacaactta 3234083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 13037793 - 13037830
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  13037793 atataagtgcttatgtataagctatttctataacaaaa 13037830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 18928401 - 18928352
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccac 169  Q
    ||||||||||||||| || ||||||||  ||||||||||||| |||||||    
T  18928401 aacctgagaccttgagaggagcacactttaaggtctcaagccaacaccac 18928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 23895265 - 23895302
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  23895265 atataagttattatgtataagctatttctataacaaaa 23895302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 30286510 - 30286587
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || ||||||||||| || |||||  |  ||||| ||| ||||||||| |||||||||||    
T  30286510 acagcttatgacaattttcataagcttttttcaactaaattttcttagttcttcaaaatagcttataaaaacaactta 30286587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 36872344 - 36872262
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacata 564  Q
    ||||||||| | | |||| || ||||||||||| ||||||||||||||  |||||| ||||||  | ||||||||||| ||||||    
T  36872344 acagcttattataattttcataagcttttttcaacttaatttcatatg--ctccaatatagctagtaaaaacaacttataacata 36872262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 557
Target Start/End: Original strand, 43230769 - 43230838
Alignment:
Q  488 tgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| ||||||| ||||||||||| |||| ||||||  ||||||||| ||||| ||| | |||||||||    
T  43230769 tgacagtttttataagcttttttcaacttattttcattagttctccaatatagcctataagaacaactta 43230838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 45232126 - 45232081
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacaccac 169  Q
    ||||||||||| || ||| ||||||||||||| |||||||||||||    
T  45232126 tgagaccttgagaggagcgcactccaaggtcttaagcctacaccac 45232081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 623
Target Start/End: Complemental strand, 47432082 - 47432033
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttatttaagctt 623  Q
    ||||||||| |||||||| ||||| ||||| ||||||||||| |||||||    
T  47432082 caatttaactttattttatctttttctataaaaatagcttatgtaagctt 47432033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 624
Target Start/End: Original strand, 53789452 - 53789595
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaattt 579  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| | |||||        || |||    
T  53789452 acagcttatgacacttttcataagcttttttcagcttaatttcataagttctccatgatagcttatgataacaacttatagcatataccaaaa-catttt 53789550  T
Q  580 aacattattttaacttttcctatagaaatagcttatttaagctta 624  Q
    ||  ||| || | ||||||||||||||||||||||| ||||||||    
T  53789551 aattttagttcatcttttcctatagaaatagcttatgtaagctta 53789595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 18405831 - 18405966
Alignment:
Q  489 gacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattatt 588  Q
    ||||||||| || | ||||||  |||||||||||||| ||||||||||||||||||||||||||||||| | |||||         |||| |||  ||||    
T  18405831 gacacttttcataatctttttcaagcttaatttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaaaaaattcaacgatatt 18405930  T
Q  589 ttaacttttcctatagaaatagcttatttaagctta 624  Q
    ||| ||||||||||| ||||| ||||| ||||||||    
T  18405931 ttatcttttcctatataaataacttatgtaagctta 18405966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 21367746 - 21367669
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| | || |  |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  21367746 acagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactta 21367669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 552
Target Start/End: Original strand, 3845554 - 3845625
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| |||||||| ||||||| | |||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  3845554 acagattatgaca-tttttataatcttttttcagcttattttcataagttctccaagataacttatgaaaaca 3845625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 556
Target Start/End: Original strand, 26990504 - 26990558
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    |||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||    
T  26990504 agcttttttcagcttattttcataagttctccgagatagcttaggaaaacaactt 26990558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 34844440 - 34844374
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||| ||||| | ||||||| ||||    
T  34844440 aacctgagaccttgagaggagcacactccaaggtctcaagccaacaacaccagggcaacccaagtgg 34844374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 42799754 - 42799820
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||||||||||||| || |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  42799754 aacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 42799820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 30443972 - 30443895
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| |  |||||||||||||||| ||||||| ||||||||| |||| |||| |||||| ||||    
T  30443972 acagcttatgacaattttcacaagcttttttcagcttattttcataagttctccaatatagtttataaaaacagctta 30443895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 624
Target Start/End: Original strand, 30956659 - 30956760
Alignment:
Q  522 catatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaaatagcttatttaagc 621  Q
    |||| ||||||||||||||||| ||||||||||||| | | |||        ||||||||| |||||||| ||||| ||||||||||||||||| |||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaa-caatttaactttattttatcttttgctatagaaatagcttatgtaagc 30956757  T
Q  622 tta 624  Q
    |||    
T  30956758 tta 30956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 624
Target Start/End: Original strand, 30972471 - 30972572
Alignment:
Q  522 catatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaaatagcttatttaagc 621  Q
    |||| ||||||||||||||||| ||||||||||||| | | |||        ||||||||| |||||||| ||||| ||||||||||||||||| |||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaa-caatttaactttattttatcttttgctatagaaatagcttatgtaagc 30972569  T
Q  622 tta 624  Q
    |||    
T  30972570 tta 30972572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 39980808 - 39980731
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||   ||| || ||||||||||| |||| ||||||| ||||||||| ||||||||| |||||||||||    
T  39980808 acagcttatgactggtttcataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaactta 39980731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 552
Target Start/End: Original strand, 46778142 - 46778253
Alignment:
Q  442 ggcataaattttgtaagaccgattgggagaactta--agcacagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagata 539  Q
    |||||||||||||| | |||| |||||||||||||  |  ||| ||||||||| |||| || || ||| |||||||| |||||||| ||| |||||||||    
T  46778142 ggcataaattttgtgaaaccgtttgggagaacttatgaaaacaacttatgacatttttcataagttttgttcagctt-atttcataagttgtccaagata 46778240  T
Q  540 gcttatgaaaaca 552  Q
    | |||||||||||    
T  46778241 gtttatgaaaaca 46778253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 20880555 - 20880483
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||||| |||| || ||||||||| |||||| ||||||| ||||||||| ||||||| | ||||||    
T  20880555 acagcttatgacaattttcataagcttttttgagcttattttcataagttctccaatatagcttttaaaaaca 20880483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 656
Target Start/End: Original strand, 39602228 - 39602369
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaa 606  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||||| |||| ||| |||        ||||||||| |||| ||| ||||| ||||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttatacgcaa--caatttaactttatgttatctttttctatagaa 39602325  T
Q  607 atagcttatttaagcttaaagtctgcaaataagttgtttatccaaacagg 656  Q
    |||||||||    || |||   ||||||||||||||||||||||| ||||    
T  39602326 atagcttat----gcataa--gctgcaaataagttgtttatccaatcagg 39602369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 2304380 - 2304345
Alignment:
Q  192 ataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  2304380 ataagtgattatgtataagctatttctataataaaa 2304345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 44747421 - 44747476
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| |||||||||| ||||||| ||| |||||||||||||||||||||| ||||    
T  44747421 agcttctttcagcttattttcataagttttccaagatagcttatgaaaacagctta 44747476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 552
Target Start/End: Complemental strand, 2719517 - 2719475
Alignment:
Q  510 tcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  2719517 tcagcttattttcataagttctccaagatagcttatgaaaaca 2719475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 10682950 - 10683016
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||||| |||| |||||||||||||||||||||||||| | ||||| |  |||||||| ||||    
T  10682950 aacctgagactttgagagaagcacactccaaggtctcaagccaataccactagatcaacccaagtgg 10683016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 557
Target Start/End: Complemental strand, 22203470 - 22203432
Alignment:
Q  519 tttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  22203470 tttcataagttctccaagatagcttatgaaaacaactta 22203432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 36887556 - 36887506
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| ||||| |||||| ||||||||||||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttatgaaaacaactta 36887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 615
Target Start/End: Original strand, 44061046 - 44061148
Alignment:
Q  512 agcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaaatagc 611  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||| | | |||        ||||||||| |||||||| ||||| |||||||||||||    
T  44061046 agcttaatttcataagttctctaagatatcatatgaaaacaacttatagcttatagaaaaa-caatttaaccttattttatcttttgctatagaaatagc 44061144  T
Q  612 ttat 615  Q
    ||||    
T  44061145 ttat 44061148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 53167795 - 53167845
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacacc 167  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  53167795 tcaaacttgagaccttgagagaagcacactccatggtctcaagccaacacc 53167845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 402533 - 402610
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| | || || |||| ||||||||||||||||| | ||||| |||||||| |||| |||||| ||||    
T  402533 acagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagctta 402610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 466250 - 466202
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaa 550  Q
    ||||||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  466250 agctttttttagcttattttcataagttctccaacatagcttatgaaaa 466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 2825199 - 2825147
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttaca 559  Q
    |||| |||||| ||||||| | |||||||||||||||||||||| ||||||||    
T  2825199 ttttaagcttattttcataagctctccaagatagcttatgaaaataacttaca 2825147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 557
Target Start/End: Original strand, 36631043 - 36631119
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||  |||| |  |||||||||| ||||| ||||||| ||||||||| |||||| || |||||||||||    
T  36631043 cagcttatgacgattttcaaaagcttttttctgcttattttcataagttctccaatatagctcataaaaacaactta 36631119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 43303830 - 43303766
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaaccca 181  Q
    ||||||||||||||| || || ||||| |||||||||||||||||  |||||||| | |||||||    
T  43303830 tcaaacctgagacctggagaggagcacgctccaaggtctcaagccatcaccaccaggccaaccca 43303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 901981 - 901930
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||||| |||||||    
T  901981 agcttttttcaacttattttcataagttctccaatatagcttataaaaacaa 901930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 26158881 - 26158834
Alignment:
Q  119 aaacctgagaccttgatagaagcacactccaaggtctcaagcctacac 166  Q
    |||||||||||||||| || ||||||||||||| ||||||||| ||||    
T  26158881 aaacctgagaccttgagaggagcacactccaagatctcaagccaacac 26158834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 554
Target Start/End: Original strand, 33883768 - 33883815
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaac 554  Q
    ||||||||||| ||||||| |||||| ||||||||||||| |||||||    
T  33883768 ttttcagcttattttcataagttctctaagatagcttatgtaaacaac 33883815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 44069831 - 44069776
Alignment:
Q  117 tcaaacctgagaccttgat-agaagcacactccaaggtctcaagcctacaccacca 171  Q
    ||||||||||||||||||  || ||||||||||||| ||||||||| |||||||||    
T  44069831 tcaaacctgagaccttgaggaggagcacactccaagatctcaagccaacaccacca 44069776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 46478767 - 46478689
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctcca--agatagcttatgaaaacaactta 557  Q
    |||||||||||| |||| || ||||||||||| |||| ||||||| ||||||||  | ||||||||| ||| |||||||    
T  46478767 cagcttatgacagttttcataagcttttttcaacttattttcataagttctccaatatatagcttataaaaccaactta 46478689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 50600191 - 50600246
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| ||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  50600191 agctgttttcagcttattttcataagttctccaatatagctgatgaaaacagctta 50600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 659
Target Start/End: Original strand, 3845736 - 3845766
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggcc 659  Q
    |||||||||||||||||||||||||||||||    
T  3845736 ctgcaaataagttgtttatccaaacagggcc 3845766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 34610824 - 34610874
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| | ||||||| |||| |||||||||||||||||| |||||||    
T  34610824 ttttcagctgattttcataagttcgccaagatagcttatgaaagcaactta 34610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 53863874 - 53863940
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||| ||||||||| || |||||||||||||||| |||||| ||| ||||| | ||||||| ||||    
T  53863874 aacctaagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggacaacccaagtgg 53863940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 584093 - 584056
Alignment:
Q  512 agcttaatttcatatgttctccaagatagcttatgaaa 549  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  584093 agcttaatttcataagttcttcaagatagcttatgaaa 584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 2128271 - 2128328
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttaca 559  Q
    |||| ||||||||||| ||||||| |||||  ||||| ||||||||||||| ||||||    
T  2128271 agctgttttcagcttattttcatacgttctaaaagatggcttatgaaaacagcttaca 2128328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 15034414 - 15034345
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtggatt 189  Q
    ||||||||||||||| || | ||| |||||||||| |||| | ||||||||| | ||||||| |||||||    
T  15034414 aacctgagaccttgagaggatcaccctccaaggtcccaaggcaacaccaccaggccaacccaagtggatt 15034345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 35623277 - 35623322
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacaccac 169  Q
    ||||||||||| || |||||||||||||||| |||||| |||||||    
T  35623277 tgagaccttgagaggagcacactccaaggtcccaagccaacaccac 35623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 37273186 - 37273141
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||    
T  37273186 ttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 41028992 - 41028955
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  41028992 atataagtgcttatgtataagctatttctataacaaaa 41028955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 17944334 - 17944419
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||    
T  17944334 acagcttatgacacttttcatatgcttttttcagcttaatttcataaattatccaagataacttatgaaaacaacttacaacatat 17944419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 33601401 - 33601477
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||||||| || ||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||    
T  33601401 acagcttatgacacttttcataagcttttttcagcttaaattcataagttctctaagatagcttat-aaaacaactta 33601477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 33602018 - 33602083
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttat 545  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||| |||||| ||||||||||||    
T  33602018 acagcttatgacacttttcataagcctttttcagcttaaattcataagttctctaagatagcttat 33602083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 38499904 - 38499981
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || |||||||| ||||||| ||||||| |||||||||||| ||||||||| ||| ||||    
T  38499904 acagcttatgacatttttcataagctttttccagcttattttcataagttctccaagattgcttatgaagacagctta 38499981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 5579237 - 5579307
Alignment:
Q  117 tcaaacctgagaccttgat-agaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||||||||||||||||  || |||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  5579237 tcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgg 5579307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 11619153 - 11619222
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    ||||||||| |||| || ||||||||||| |||||||||||| |||||||||  |||||||| |||||||    
T  11619153 cttatgacaattttcataagcttttttcaacttaatttcataagttctccaacgtagcttataaaaacaa 11619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 40377843 - 40377928
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||| ||||  |||| || ||||||||| || ||| ||||||| ||||||||| |||| ||||||||||||||| ||||||||    
T  40377843 acagcttttgactattttaataagcttttttgagtttattttcataagttctccaatataggttatgaaaacaacttgcaacatat 40377928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 13585731 - 13585657
Alignment:
Q  97 aaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    |||||||||  || ||||||| ||||||| |||||||| || |||| ||||||||||||||| |||||| |||||    
T  13585731 aaattggcaccggaaggatttgaaacctgcgaccttgagaggagcaaactccaaggtctcaaacctacatcacca 13585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 21050151 - 21050193
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacac 166  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  21050151 tgagaccttgagaggagcacactccaaggtctcaagcctacac 21050193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 43648292 - 43648242
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||| ||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagctta 43648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 47130803 - 47130853
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| |||| ||||| | |||||||||||||||||||||||||||||||    
T  47130803 ttttcaacttattttcacaagttctccaagatagcttatgaaaacaactta 47130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 48917368 - 48917414
Alignment:
Q  511 cagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaacaactta 48917414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 553
Target Start/End: Original strand, 21568447 - 21568559
Alignment:
Q  443 gcataaattttgtaagaccgattgggagaactta--agcacagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatag 540  Q
    ||||| ||||||| |||| | |||||||||||||  |  ||||||||| ||| |||| || |||| |||||| |||| || |||| ||||||||| ||||    
T  21568447 gcatatattttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctcttttcaacttagttccataagttctccaatatag 21568546  T
Q  541 cttatgaaaacaa 553  Q
    ||||| |||||||    
T  21568547 cttataaaaacaa 21568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 34744103 - 34744030
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| |||| |  ||||||||||  |||| ||| ||| ||||||||| |||||||||||||||||||||    
T  34744103 cttatgacaattttcacaagcttttttcgccttatttttataagttctccaatatagcttatgaaaacaactta 34744030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 48470123 - 48470046
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||| || |||| || ||||||||| ||||||  |||||| ||| | ||| |||||||||||||||||||||    
T  48470123 acagcttatggcatttttcataagcttttttgagcttatgttcataagttattcaaaatagcttatgaaaacaactta 48470046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 5947262 - 5947186
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| || |||| || |||| ||||||||||| |||||||  |||||| |||||||||||||| ||| ||||    
T  5947262 cagcttatggcatttttcataagctcttttcagcttattttcataacttctcctagatagcttatgaatacagctta 5947186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 557
Target Start/End: Original strand, 14696405 - 14696456
Alignment:
Q  505 ttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  14696405 ttttttcagctta-tttcataagttgtccaacatagcttatgaaaacaactta 14696456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 33128540 - 33128596
Alignment:
Q  116 ttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaa 172  Q
    ||||||||||||||| ||| || | ||||||||||||||||||| ||||||| ||||    
T  33128540 ttcaaacctgagaccatgagaggatcacactccaaggtctcaaggctacaccgccaa 33128596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 48507797 - 48507729
Alignment:
Q  485 ttatgacactttttatcagcttttttcagcttaatttcatatgttctccaa-gatagcttatgaaaaca 552  Q
    |||||||| ||||||| ||  |||||||||||||||||||| |||||| || ||| |||||||||||||    
T  48507797 ttatgacattttttataagtatttttcagcttaatttcataagttctctaaggatggcttatgaaaaca 48507729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 8677578 - 8677629
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    |||||||||||| || || ||||| |||| ||||||||||||||||||||||    
T  8677578 aacctgagacctagagaggagcaccctcctaggtctcaagcctacaccacca 8677629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 552
Target Start/End: Complemental strand, 9050689 - 9050642
Alignment:
Q  505 ttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||    
T  9050689 ttttttcagcttattttcacaagttctccaagatagtttatgaaaaca 9050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 27481438 - 27481403
Alignment:
Q  187 attatataagtgattatgtataagctatttctataa 222  Q
    |||||||||||| |||||||||||||||||||||||    
T  27481438 attatataagtgtttatgtataagctatttctataa 27481403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 535
Target Start/End: Original strand, 30570922 - 30570977
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaa 535  Q
    ||||||||||||| |||| || |||||||||||  ||||||||||| |||||||||    
T  30570922 acagcttatgacaattttcataagcttttttcatgttaatttcataagttctccaa 30570977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 565
Target Start/End: Original strand, 40252128 - 40252183
Alignment:
Q  510 tcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    |||||||| ||||||| ||||||||||||| |||||||||| | |||| |||||||    
T  40252128 tcagcttattttcataagttctccaagataacttatgaaaagagcttataacatat 40252183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 46280285 - 46280340
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| || ||||||| ||||||||| ||||||||| |||||| ||||    
T  46280285 agcttttttcagcctattttcataagttctccaatatagcttataaaaacagctta 46280340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 119896 - 119850
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttatttaag 620  Q
    ||||||||| |||||||| |||||||| |||||||||||||| ||||    
T  119896 caatttaactttattttatcttttcctgtagaaatagcttatgtaag 119850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 7087523 - 7087481
Alignment:
Q  188 ttatataagtgattatgtataagctatttctataataaaatat 230  Q
    |||||| |||||||||||||||||||||| ||||| |||||||    
T  7087523 ttatatgagtgattatgtataagctatttttataaaaaaatat 7087481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 18965728 - 18965778
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||  ||||||| |  ||||||||||||||||||||||||||||    
T  18965728 ttttcagcttgttttcataagacctccaagatagcttatgaaaacaactta 18965778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 20881654 - 20881704
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| |||||  ||||||| ||||||||||||||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaacaactta 20881704  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 21035179 - 21035241
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||| |||||| || |||||||||||||||||||||| ||||| || | | ||||||||||||    
T  21035179 tgagtccttgagaggagcacactccaaggtctcaagcttacacaacgaggccaacccatgtgg 21035241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 659
Target Start/End: Complemental strand, 28210351 - 28210321
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggcc 659  Q
    |||||||||||||||||||||||||||||||    
T  28210351 ctgcaaataagttgtttatccaaacagggcc 28210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 545
Target Start/End: Complemental strand, 39281021 - 39280983
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttat 545  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  39281021 ttttcagcttatttccatatgttctccaagatagcttat 39280983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 659
Target Start/End: Complemental strand, 45593444 - 45593414
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggcc 659  Q
    |||||||||||||||||||||||||||||||    
T  45593444 ctgcaaataagttgtttatccaaacagggcc 45593414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 565
Target Start/End: Complemental strand, 46139972 - 46139926
Alignment:
Q  519 tttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||| |||||||||||||||||||| || || ||||||||||||    
T  46139972 tttcataagttctccaagatagcttatgtaagcagcttacaacatat 46139926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 7244732 - 7244687
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  7244732 ttttcagcttattttcataagctctccaatatagcttatgaaaaca 7244687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 557
Target Start/End: Original strand, 19022580 - 19022653
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| |||| || || | | |||| |||| ||||||| ||||||||| ||||||||| |||||||||||    
T  19022580 cttatgacaattttcataagttgtcttcaacttattttcataagttctccaatatagcttataaaaacaactta 19022653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 35328878 - 35328947
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||| | ||||||| |||||||||||| |||||  |||||| ||||||||| | ||||||| ||||    
T  35328878 tcaaacctaaaaccttgagagaagcacactcgaaggttccaagccaacaccaccaggccaacccaagtgg 35328947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 39967999 - 39967922
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||| || | || || |||| |||||| |||| ||||||  ||||||  |||||||||||||||||||||||    
T  39967999 acagcttatggcattgttcataagctgttttcaacttattttcattagttctctcagatagcttatgaaaacaactta 39967922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 557
Target Start/End: Original strand, 45790421 - 45790493
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| ||||||  ||||||| |||||||| ||||||| ||| ||||| |||| |||| |||||||||||    
T  45790421 cttatgacaatttttaaaagctttt-tcagcttattttcataagttatccaatatagtttataaaaacaactta 45790493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 46213732 - 46213773
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaatata 231  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||    
T  46213732 atataagtgcttatgtaaaagctatttctataacaaaatata 46213773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 17822856 - 17822933
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||    
T  17822856 acagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaactta 17822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 565
Target Start/End: Complemental strand, 54426162 - 54426037
Alignment:
Q  442 ggcataaattttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagata 539  Q
    ||||||| |||||| |||| | ||||||||||||| | |  |||||||||||| |||| || |||||||||||  ||| ||||||| ||||||||| |||    
T  54426162 ggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgacaattttcataagcttttttcaagttattttcataagttctccaatata 54426063  T
Q  540 gcttatgaaaacaacttacaacatat 565  Q
    | |||| ||||||||||| |||||||    
T  54426062 gattataaaaacaacttataacatat 54426037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 615
Target Start/End: Original strand, 55414411 - 55414545
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaattt 579  Q
    ||||||||||||| |||| || ||||||||||| |||| ||||||| ||||||||||||| ||||||||||||| ||| | |||||         || ||    
T  55414411 acagcttatgacatttttcataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttatagcatatgcaaaaa-aaaatt 55414509  T
Q  580 aacattattttaacttttcctatagaaatagcttat 615  Q
    ||| |||||||| ||||||| |||||||||||||||    
T  55414510 aactttattttatcttttccaatagaaatagcttat 55414545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 25434643 - 25434725
Alignment:
Q  96 gaaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaaccca 181  Q
    |||||||||| |||||| ||  ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  25434643 gaaattggcaatgggagaat--caaacctgagaccttgagagaagcacactccaaggtcccaagcc-acaccaccaggccaaccca 25434725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 38206129 - 38206198
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||||||||||||| || |||||||||||||||| ||||||  |||||||| ||||||||| ||||    
T  38206129 tcaaacctgagaccttgagaggagcacactccaaggtcccaagccagcaccaccaggtcaacccaagtgg 38206198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 556
Target Start/End: Original strand, 30668358 - 30668433
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||   | ||||||||||||||| ||||||||||    
T  30668358 acagcttatgacacttttcataagctttt-tcagcttaatttcataaactatccaagatagcttataaaaacaactt 30668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 2996630 - 2996575
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  2996630 agcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaactta 2996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 445 - 557
Target Start/End: Original strand, 39603124 - 39603238
Alignment:
Q  445 ataaattttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagct 542  Q
    |||| |||||| |||| | ||||||||||||| | |  |||||||||||| ||||||| ||||||||| |  ||| ||||||| ||||||||| ||| ||    
T  39603124 ataagttttgtgagactgtttgggagaacttaggaaaacagcttatgacaatttttataagctttttttaagttattttcataagttctccaatatacct 39603223  T
Q  543 tatgaaaacaactta 557  Q
    ||| |||||||||||    
T  39603224 tataaaaacaactta 39603238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 41512730 - 41512653
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| |||||||| || ||||||| ||| |||| ||||||| ||||| | ||| |||||||||||||||||||    
T  41512730 acagcttataacacttttcataagcttttatcatcttattttcataagttcttccagaaagcttatgaaaacaactta 41512653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 55302328 - 55302251
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| ||||  | |||||||||||||||| ||||||| ||| ||||| ||||||||||| |||| ||||    
T  55302328 acagcttatgacaattttcgtaagcttttttcagcttattttcataagttttccaacatagcttatgataacagctta 55302251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 624
Target Start/End: Original strand, 50681087 - 50681223
Alignment:
Q  487 atgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacatta 586  Q
    |||||| |||| || |||||||||||  ||| |||||||  |||||||| |||||||||  |||||||||| | |||||        |||||||||||||    
T  50681087 atgacaattttcataagcttttttcaatttattttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaa-caatttaacatta 50681185  T
Q  587 ttttaacttttcctatagaaatagcttatttaagctta 624  Q
    ||||| ||| ||||||| ||||||||| | ||||||||    
T  50681186 ttttatcttatcctataaaaatagcttttgtaagctta 50681223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 4686131 - 4686182
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacacca 168  Q
    ||||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  4686131 tcaaacctgagacattgagaggagcacactccaaggtctcaagccaacacca 4686182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 13126567 - 13126630
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagctt 543  Q
    ||||||||||||| || | || |||||||||||||||| ||||||| |||||| ||||||||||    
T  13126567 acagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagctt 13126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 25414218 - 25414269
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacacca 168  Q
    ||||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  25414218 tcaaacctgagactttgagaggagcacactccaaggtctcaagccaacacca 25414269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 552
Target Start/End: Complemental strand, 24169340 - 24169270
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| |||| || || |||||||| |||| ||||||| | ||||||||||||||| ||||||||    
T  24169340 agcttatgacatttttcataagattttttcaacttattttcataagctctccaagatagcttgtgaaaaca 24169270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 37980154 - 37980224
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtggatta 190  Q
    ||||||||||||||| || |||||||||||||||| |||||| ||| ||||| | ||||||| ||| ||||    
T  37980154 aacctgagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaacccaagtgaatta 37980224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 21731647 - 21731724
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| ||| |||| || | ||||||||| |||| |||||||  |||||||| ||||||||| |||||||||||    
T  21731647 acagcttatcacaattttcataaacttttttcaacttactttcataaattctccaatatagcttataaaaacaactta 21731724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 40831021 - 40831097
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||| ||||  |||||| ||||||||||| |||| ||||||| |||||||||  |||||||| |||||||||||    
T  40831021 acagcttacgacaacttttataagcttttttcaactta-tttcataagttctccaatctagcttataaaaacaactta 40831097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 42281237 - 42281290
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacc 170  Q
    |||||||||||||||||| || |||||||| ||||||| |||||| ||||||||    
T  42281237 tcaaacctgagaccttgagaggagcacactacaaggtcccaagccaacaccacc 42281290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 825508 - 825552
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaac 551  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||    
T  825508 ttttcagcttattttcataagttctccaaaatagcttatgaaaac 825552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 545
Target Start/End: Original strand, 25904176 - 25904279
Alignment:
Q  444 cataaattttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagc 541  Q
    |||||||||||| |||| | |||||||| |||| | |  ||||||||| || |||| || |||||||||||||||| ||| ||| ||||||||| | |||    
T  25904176 cataaattttgtgagactgtttgggagagcttatgaaaacagcttatgccatttttcataagcttttttcagcttatttttataagttctccaaaacagc 25904275  T
Q  542 ttat 545  Q
    ||||    
T  25904276 ttat 25904279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 55994331 - 55994287
Alignment:
Q  187 attatataagtgattatgtataagctatttctataataaaatata 231  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||    
T  55994331 attatataaatgcttatgtataagctatttctataagaaaatata 55994287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 557
Target Start/End: Original strand, 16199998 - 16200049
Alignment:
Q  506 tttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| |||||| ||||||| || ||||||||||||||||||||||| ||||    
T  16199998 ttttttagcttattttcataagtcctccaagatagcttatgaaaacagctta 16200049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 29195157 - 29195098
Alignment:
Q  127 gaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||| || |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  29195157 gaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 29195098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 56410020 - 56409969
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    ||||||||||||||| || |||||||||||||||| |||||| ||| |||||    
T  56410020 aacctgagaccttgagaggagcacactccaaggtcccaagccaacagcacca 56409969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 556
Target Start/End: Original strand, 4798579 - 4798633
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    |||| |||| |||||| || |||| | ||||||||||||||||||||||||||||    
T  4798579 agctgttttgagcttatttgcataagctctccaagatagcttatgaaaacaactt 4798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 24936238 - 24936280
Alignment:
Q  189 tatataagtgattatgtataagctatttctataataaaatata 231  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||    
T  24936238 tatataagtggttatgtataagttatttctataacaaaatata 24936280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 29913000 - 29912942
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||||||| ||| ||| ||| ||||||||||||||||||||| ||||  |||||||    
T  29913000 ttttcagcttatttttataagttgtccaagatagcttatgaaaacgacttttaacatat 29912942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 36823938 - 36823968
Alignment:
Q  194 aagtgattatgtataagctatttctataata 224  Q
    |||||||||||||||||||||||||||||||    
T  36823938 aagtgattatgtataagctatttctataata 36823968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 47183391 - 47183333
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaac 178  Q
    ||||||||| ||||| || | ||||||||||||||||||||| |||||| || ||||||    
T  47183391 aacctgagatcttgagaggatcacactccaaggtctcaagccaacaccatcaggtcaac 47183333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 47800675 - 47800625
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| | ||| |||||||||||||||||||| ||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagctta 47800625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 659
Target Start/End: Complemental strand, 49803128 - 49803098
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggcc 659  Q
    |||||||||||||||||||||||||||||||    
T  49803128 ctgcaaataagttgtttatccaaacagggcc 49803098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 52734855 - 52734805
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| |||||| || |||||||||| || ||||||||||||||||||||||    
T  52734855 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaactta 52734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 1408036 - 1407963
Alignment:
Q  480 acagcttatgacactttttatcagct-tttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||||| |||| || |||| ||||||||||||  ||||||  || ||| ||||||||||||||||||    
T  1408036 acagcttatgacatttttcataagctgtttttcagcttatcttcataaattttcctagatagcttatgaaaaca 1407963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 2111073 - 2111118
Alignment:
Q  512 agcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| ||||||| || || |||||||||||||||||||||||||    
T  2111073 agcttattttcataagtccttcaagatagcttatgaaaacaactta 2111118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 2244130 - 2244065
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttat 545  Q
    ||||||||||||| | || || | ||||||||| |||| ||||||| ||||||||| |||||||||    
T  2244130 acagcttatgacaatattcataaacttttttcaccttattttcataagttctccaatatagcttat 2244065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 2980612 - 2980575
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  2980612 atataagtgcttatgtataagctatttctataacaaaa 2980575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Complemental strand, 3155589 - 3155548
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttat 615  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  3155589 caatttaactttattttatcttttgctatagaaatagcttat 3155548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 4191668 - 4191705
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  4191668 atataagtgcttatgtataagctatttctataacaaaa 4191705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 7749223 - 7749186
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  7749223 atataagtgtttatgtatacgctatttctataataaaa 7749186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 35571622 - 35571699
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| ||||| || || ||||  ||||| |||| ||||| | |||||| ||||||||||||||||||| ||||    
T  35571622 acagcttattacactgttcatgagctggtttcaacttattttcacaagttctctaagatagcttatgaaaacagctta 35571699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 42121539 - 42121490
Alignment:
Q  508 tttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||| || || | |||||||||||||||| ||||||||||||||    
T  42121539 tttcagcttatttccacaagttctccaagatagctcatgaaaacaactta 42121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 665
Target Start/End: Complemental strand, 47399432 - 47399403
Alignment:
Q  636 taagttgtttatccaaacagggccataata 665  Q
    ||||||||||||||||||||||||||||||    
T  47399432 taagttgtttatccaaacagggccataata 47399403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 47970247 - 47970284
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  47970247 atataagtgcttatgtataagctatttctataacaaaa 47970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 50004162 - 50004207
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||||| ||||||||||||| |||| |||||||    
T  50004162 ttttcagcttattttcataagttctccaagataacttaggaaaaca 50004207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 53673676 - 53673721
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| || |||| | ||||||||||||||||||||||||    
T  53673676 ttttcagcttatttacataagctctccaagatagcttatgaaaaca 53673721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 55084500 - 55084549
Alignment:
Q  508 tttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||| ||||||| | |||| ||||||||| ||||||||||||||    
T  55084500 tttcagcttattttcataagctctctaagatagctcatgaaaacaactta 55084549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 9763639 - 9763563
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||    
T  9763639 acagcttatgacacttttgataagcttttttcaacttaatttcataagttctacaatatagcttatgaaaacaactt 9763563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 34430452 - 34430537
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||||||||| || | || |||||||||||||||| |||||||  ||||||||||||||||||||||||| |||| |||||||    
T  34430452 acagcttatgacatttatcataagcttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatat 34430537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 835267 - 835311
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaac 551  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatgaaaac 835311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 509 - 620
Target Start/End: Original strand, 6909892 - 6910003
Alignment:
Q  509 ttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacatta-ttttaacttttcctatagaaa 607  Q
    |||||||||||||||||  ||||||||||||  |||||||||||||||| | |||||        ||||||||| ||| ||||  |||||||||||||||    
T  6909892 ttcagcttaatttcataaattctccaagatatgttatgaaaacaacttatagcatatacaaaaa-caatttaactttatttttttcttttcctatagaaa 6909990  T
Q  608 tagcttatttaag 620  Q
    |||||||| ||||    
T  6909991 tagcttatgtaag 6910003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 546
Target Start/End: Complemental strand, 31813213 - 31813174
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatg 546  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  31813213 ttttcagcttattttcatatgttctccaagatagcttatg 31813174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 837234 - 837284
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||| |||||    
T  837234 ttttcagcttattttcataagttctccaagatagctaatgaaaactactta 837284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 6691557 - 6691627
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtggatta 190  Q
    ||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | ||||||| || |||||    
T  6691557 aacctgagaccttgagaggagcacactccaaggtctaaagtcaacaccaccaggccaacccaagttgatta 6691627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 26694930 - 26694872
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| |||||||    
T  26694930 ttttcagcttattttcataagttcttcaagatagtttatgaaaacaatttataacatat 26694872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 3869761 - 3869704
Alignment:
Q  124 tgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaaccca 181  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||| || | |||||||    
T  3869761 tgagaccttgatagaagcacactcgaagatctcaagccaacaccatcaggccaaccca 3869704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 20368199 - 20368248
Alignment:
Q  508 tttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| |||| ||||||| ||||||||||| |||||||||||||||||||    
T  20368199 tttcaacttattttcataagttctccaagaaagcttatgaaaacaactta 20368248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 624
Target Start/End: Complemental strand, 24626324 - 24626231
Alignment:
Q  530 ctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaaatagcttatttaagctta 624  Q
    |||||||||||||||||||||||||||| |  ||||        ||||||||| || ||||| | ||||||||||||||||||||| ||||||||    
T  24626324 ctccaagatagcttatgaaaacaacttatagaatatacaaaaa-caatttaactttgttttatcctttcctatagaaatagcttatgtaagctta 24626231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 24982784 - 24982707
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || ||||||||| ||||||   ||||| ||||||||| ||| |||||||||||| ||||    
T  24982784 acagcttatgacatttttaatgagctttttttagcttaccctcataagttctccaaaataacttatgaaaacagctta 24982707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 31812036 - 31812081
Alignment:
Q  512 agcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaacaactta 31812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 6384009 - 6384056
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacacc 167  Q
    ||||||||||||||| || |||||||||||||||| |||||| |||||    
T  6384009 aacctgagaccttgagaggagcacactccaaggtcccaagccaacacc 6384056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 27869695 - 27869781
Alignment:
Q  97 aaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgt 184  Q
    ||||||||||| |||||| | ||| ||||||| ||||| || ||||||||| || ||| |||||| | ||||||| ||||||||||||    
T  27869695 aaattggcattaggaggactccaa-cctgagatcttgagaggagcacactctaaagtcccaagcccataccaccaggtcaacccatgt 27869781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 31420884 - 31420923
Alignment:
Q  187 attatataagtgattatgtataagctatttctataataaa 226  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  31420884 attatataagtgtttatttataagctatttctataataaa 31420923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 2514634 - 2514668
Alignment:
Q  193 taagtgattatgtataagctatttctataataaaa 227  Q
    |||||| ||||||||||||||||||||||||||||    
T  2514634 taagtgcttatgtataagctatttctataataaaa 2514668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 483 - 557
Target Start/End: Complemental strand, 2735145 - 2735071
Alignment:
Q  483 gcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||| |||| || |||| ||||| ||||| ||||||| ||| | |||||| ||||||||||||| ||||    
T  2735145 gcttatgacatttttcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagctta 2735071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 559
Target Start/End: Original strand, 10476161 - 10476191
Alignment:
Q  529 tctccaagatagcttatgaaaacaacttaca 559  Q
    |||||||||||||||||||||||||||||||    
T  10476161 tctccaagatagcttatgaaaacaacttaca 10476191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 13907637 - 13907587
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||| ||| |||||||  ||||||||||| ||||||||||||||||||    
T  13907637 ttttcagtttattttcataatttctccaagatggcttatgaaaacaactta 13907587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 10452501 - 10452460
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaatata 231  Q
    |||| |||| ||||||||||||||||||||||| ||||||||    
T  10452501 atatcagtgcttatgtataagctatttctataacaaaatata 10452460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 29249403 - 29249444
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaatata 231  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  29249403 atataagtgcttatgtatcagctatttctataacaaaatata 29249444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 31624168 - 31624092
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| | || || |||| |||||| |||| |||||||  |||||||||||||| |||||||||| ||||    
T  31624168 acagcttatgaca-tgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagctta 31624092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 31668826 - 31668789
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  31668826 atataagtgcttatgtataagctatttctataacaaaa 31668789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 34405034 - 34405071
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  34405034 atataagtgtttatctataagctatttctataataaaa 34405071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 450 - 557
Target Start/End: Complemental strand, 41851646 - 41851537
Alignment:
Q  450 ttttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatga 547  Q
    |||||| |||| ||||||||||| ||| | |  || |||||||||||||| || ||||||| ||||||||||||||||  |||||||||||||||| |||    
T  41851646 ttttgtgagactgattgggagaatttatggaaacaacttatgacacttttcataagcttttctcagcttaatttcataaattctccaagatagcttctga 41851547  T
Q  548 aaacaactta 557  Q
    ||||||||||    
T  41851546 aaacaactta 41851537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 502 - 624
Target Start/End: Original strand, 41241145 - 41241266
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttccta 601  Q
    |||||||||||||||||||||| | ||| ||||||||| |||| |||||| ||||| | |||||        ||||||||| | |||||| |||||||||    
T  41241145 agcttttttcagcttaatttcacaagttttccaagataacttaggaaaactacttatagcatatacaaaaa-caatttaacttcattttatcttttccta 41241243  T
Q  602 tagaaatagcttatttaagctta 624  Q
    |||||||||||||| ||||||||    
T  41241244 tagaaatagcttatgtaagctta 41241266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 45229586 - 45229517
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    ||||||||| |||| || |||||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  45229586 cttatgacatttttcattagcttttttcagcttattttcataagttctcgaagatagcttatgaaaacaa 45229517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 623
Target Start/End: Original strand, 12464486 - 12464606
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttccta 601  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||| | |||| | |||||        ||||||||| |||||||| ||||| |||    
T  12464486 agcttttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaa-caatttaactttattttatctttttcta 12464584  T
Q  602 tagaaatagcttatttaagctt 623  Q
     ||||||||||||| |||||||    
T  12464585 cagaaatagcttatgtaagctt 12464606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 43279520 - 43279597
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |||| || ||||||||||| |||| ||||| | ||||||||| ||||||||| |||||||||||    
T  43279520 acagcttatgacaattttcataagcttttttcaacttattttcacaagttctccaatatagcttataaaaacaactta 43279597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 482 - 552
Target Start/End: Original strand, 33319807 - 33319875
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||||||||||  ||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  33319807 agcttatgaca--tttaataagcttttttcagcttattttcataagttctccaagatagtttatgaaaaca 33319875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 26202103 - 26202030
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| |||| || ||||||||||| |||| ||||||| ||||||||| ||| ||||| |||||||||||    
T  26202103 cttatgacaattttcataagcttttttcaacttattttcataagttctccaatatatcttataaaaacaactta 26202030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 26143658 - 26143710
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttaca 559  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||    
T  26143658 ttttcagcttattttcataagttctccaagttagcttatgaaaacagcttaca 26143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 482 - 557
Target Start/End: Complemental strand, 1625977 - 1625902
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| | || || || | ||||||||| | |||| || |||||||||||||||||||||||||||||||    
T  1625977 agcttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaactta 1625902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 541
Target Start/End: Complemental strand, 33981198 - 33981140
Alignment:
Q  483 gcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagc 541  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||  ||||||||||||||    
T  33981198 gcttatgacacatttcataagcttttttcaacttaatttcataaattctccaagatagc 33981140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 40279249 - 40279199
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| | ||||||| ||||||||| |||||||||||||||||||||    
T  40279249 ttttcagctaattttcataagttctccaacatagcttatgaaaacaactta 40279199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 40279319 - 40279269
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| | ||||||| ||||||||| |||||||||||||||||||||    
T  40279319 ttttcagctaattttcataagttctccaatatagcttatgaaaacaactta 40279269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 40279389 - 40279339
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| | ||||||| ||||||||| |||||||||||||||||||||    
T  40279389 ttttcagctaattttcataagttctccaatatagcttatgaaaacaactta 40279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 40279459 - 40279409
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||||||||||    
T  40279459 ttttcaacttattttcataagttctccaatatagcttatgaaaacaactta 40279409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 43985021 - 43985071
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| | ||| |||||||||||||||||||||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaactta 43985071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 18066207 - 18066130
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| |  | || |||| |||||| |||| |||| || |||||||||||||||||||||||||| ||||    
T  18066207 acagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagctta 18066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 18825413 - 18825344
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||| ||||||||||| || |||||||||| ||||| |||||| ||||||||| || |||||| ||||    
T  18825413 tcaaacttgagaccttgagaggagcacactcctaggtcccaagccaacaccaccaggtaaacccaagtgg 18825344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 624
Target Start/End: Complemental strand, 32592663 - 32592523
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaa 581  Q
    |||||| |||| |||| || ||||||| ||| |||| ||||||| ||||||||| || |||||| ||||||||||| | | |||        ||||||||    
T  32592663 agcttacgacaattttcataagcttttctcaacttattttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa--caatttaa 32592566  T
Q  582 cattattttaacttttcctatagaaatagcttatttaagctta 624  Q
    |||||||||| ||||| ||||| |||||| ||||  |||||||    
T  32592565 cattattttatctttttctataaaaatagtttatgcaagctta 32592523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 35379034 - 35379079
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||    
T  35379034 ttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 42458000 - 42457959
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaa 548  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  42458000 ttttcagcttattttcatatgttctctaagatagcttatgaa 42457959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10150681 - 10150721
Alignment:
Q  187 attatataagtgattatgtataagctatttctataataaaa 227  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  10150681 attatataagtgtttatgtataagttatttctataataaaa 10150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 13747636 - 13747700
Alignment:
Q  116 ttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaaccc 180  Q
    ||||||||||||||||||  || |||| ||||||||||| |||||| ||||||| ||| ||||||    
T  13747636 ttcaaacctgagaccttgggaggagcatactccaaggtcccaagccaacaccactaagccaaccc 13747700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 6772533 - 6772588
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||||| ||||||| | ||||| ||||| |||||||||| ||||||    
T  6772533 agcttttttcagcttactttcataagctctcctagataccttatgaaaataactta 6772588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 664
Target Start/End: Complemental strand, 9174720 - 9174685
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggccataat 664  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9174720 ctgcaaataagttgtttatccaaacagagccataat 9174685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 11513955 - 11513900
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| ||||||||||| || || | |||||||| ||||||||||||||||||||||    
T  11513955 agctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaactta 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 563
Target Start/End: Complemental strand, 12289876 - 12289793
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacat 563  Q
    |||| |||||||| | || || ||||||||||| |||| ||||||| ||||||||| |||  |||| ||||||||||| |||||    
T  12289876 acagtttatgacaatattcataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataacat 12289793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 557
Target Start/End: Complemental strand, 16451222 - 16451120
Alignment:
Q  457 agaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaac 554  Q
    |||||| ||||||||||||| | |  || ||||||||| | || || |||| ||||||||||| |||||   |||||||||||||||||| ||||||| |    
T  16451222 agaccgtttgggagaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagcttacgaaaacagc 16451123  T
Q  555 tta 557  Q
    |||    
T  16451122 tta 16451120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 29510645 - 29510594
Alignment:
Q  506 tttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| ||||||||||||| | |||| ||||||||||| ||||||||||||    
T  29510645 tttttcggcttaatttcataagctctcaaagatagcttaggaaaacaactta 29510594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 30359704 - 30359657
Alignment:
Q  139 agcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| ||||    
T  30359704 agcacactccaaggtcccaagccaacaccaccaagccaacccaagtgg 30359657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 550
Target Start/End: Complemental strand, 44443373 - 44443330
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaa 550  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||    
T  44443373 ttttcagcttattttcatatgctctcaaagatagcttatgaaaa 44443330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 680581 - 680512
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaa 550  Q
    ||||||||||||| | ||||| | || ||||||||||| ||||| | ||||| ||||||||||||||||||    
T  680581 acagcttatgaca-tgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaa 680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 552
Target Start/End: Complemental strand, 26626950 - 26626880
Alignment:
Q  482 agcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| | || || | || ||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  26626950 agcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaaca 26626880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 27237997 - 27237959
Alignment:
Q  193 taagtgattatgtataagctatttctataataaaatata 231  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  27237997 taagtgcttatgtataagctatttcaataataaaatata 27237959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 29316793 - 29316843
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| || |||| |||||||||||||||| ||||||||| ||||    
T  29316793 ttttcagcttatttccataagttctccaagatagctgatgaaaacagctta 29316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 35755642 - 35755604
Alignment:
Q  191 tataagtgattatgtataagctatttctataataaaata 229  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  35755642 tataagtgtttatgtataagctatttctataatcaaata 35755604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 44590086 - 44590036
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| | ||| | ||||| |||||||||||||||||||||||||    
T  44590086 ttttcagcttattctcacaagttcttcaagatagcttatgaaaacaactta 44590036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 3611278 - 3611233
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  3611278 tttttagcttattttcataagttctccaagatagcttgtgaaaaca 3611233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 6099525 - 6099566
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcc 161  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  6099525 aacctgagaccttgagaggagcacactccaaggtcccaagcc 6099566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 7250356 - 7250264
Alignment:
Q  61 ggggcccatttaaaaccaatatggactagcccttagaaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtc 154  Q
    |||||||||||||| ||| |||| ||||||||   |||||||||   ||||||| | ||||| ||||| ||||| || ||||||||||||||||    
T  7250356 ggggcccatttaaagccattatgaactagcccaccgaaattggctccgggaggaat-caaacttgagatcttgagaggagcacactccaaggtc 7250264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 552
Target Start/End: Complemental strand, 8017474 - 8017441
Alignment:
Q  519 tttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||| ||||||||||||||||||||||||||    
T  8017474 tttcataagttctccaagatagcttatgaaaaca 8017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 9174890 - 9174817
Alignment:
Q  484 cttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| | || || |||| ||||||||||| ||||||| | |||  ||||||||||||||||||| ||||    
T  9174890 cttatgacattgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagctta 9174817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Complemental strand, 13220436 - 13220395
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttat 615  Q
    |||| |||| |||||||||||||| |||||||||||||||||    
T  13220436 caatctaactttattttaactttttctatagaaatagcttat 13220395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 13864579 - 13864616
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  13864579 atataagtgtttatgtataagctatttctataacaaaa 13864616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 20952410 - 20952357
Alignment:
Q  504 cttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||| |||| ||||||| ||||||||| |||||| || |||||||||||    
T  20952410 cttttttcaacttattttcataagttctccaatatagctaataaaaacaactta 20952357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 40158796 - 40158720
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| | ||||| || | |||||||||||||| |||| | ||||||  ||| |||||||||||||||||    
T  40158796 acagcttatgaca-tgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaacaactta 40158720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 549
Target Start/End: Original strand, 41812083 - 41812151
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaa 549  Q
    ||||||||||||| |||| || ||||||||||| ||| ||||| || ||| ||||||||||||| |||||    
T  41812083 acagcttatgacatttttcataagcttttttcaactt-atttcctaagttttccaagatagcttttgaaa 41812151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 37954765 - 37954689
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    ||||||||||| | |||| || ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||    
T  37954765 acagcttatgaaaattttcattagcttttttcaacttattttcatatgttctccaatatagcttataaaaacaactt 37954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 39105543 - 39105471
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||||| | || || |||| |||| |||||| ||||||| ||||||||||||||||||||||||||    
T  39105543 acagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaaca 39105471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 4014437 - 4014492
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  4014437 agctgttttcagcttattttcataagttctccaagatagcttatgaaaacagctta 4014492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 16172990 - 16173056
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||| |||| | ||||||| ||||    
T  16172990 aacctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaacccaagtgg 16173056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 557
Target Start/End: Complemental strand, 29925952 - 29925843
Alignment:
Q  450 ttttgtaagaccgattgggagaactta--agcacagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatga 547  Q
    |||||| |||||| |||||||||||||  |  ||||||||||||| | || ||  | |||||||| |||| ||||||| ||||||||| ||||||||||     
T  29925952 ttttgtgagaccgtttgggagaacttatgaaaacagcttatgacaatgttcatgtgtttttttcaacttattttcataagttctccaatatagcttatgt 29925853  T
Q  548 aaacaactta 557  Q
    ||||||||||    
T  29925852 aaacaactta 29925843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 16937874 - 16937951
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||  ||| || |||||||||||||||| |||| || ||||||||| ||||| ||| |||||||||||    
T  16937874 acagcttatgacaaatttcataagcttttttcagcttattttcctaagttctccaatatagcgtataaaaacaactta 16937951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 43300957 - 43300880
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| ||||||| ||| ||| ||| | |||||||||| ||||||| ||||||||||||||||||  |||||||||||    
T  43300957 acagcctatgacattttatataagcatgtttcagcttattttcataagttctccaagatagcttacaaaaacaactta 43300880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 14656650 - 14656710
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaaccc 180  Q
    ||||||||||||||| || |||| |||||||||||||||||| |||| |||| ||||||||    
T  14656650 aacctgagaccttgagaggagcaaactccaaggtctcaagccaacacaaccaggtcaaccc 14656710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 25461169 - 25461085
Alignment:
Q  481 cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    ||||||||| || |||| || | | |||||||||||| ||||||  ||||||||| | ||||||||||||||||||| |||||||    
T  25461169 cagcttatggcaattttcataaacgtttttcagcttattttcatcagttctccaatagagcttatgaaaacaacttataacatat 25461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 555
Target Start/End: Complemental strand, 10640032 - 10639957
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaact 555  Q
    ||||||||||||| |||| || ||||||||  |||||| ||||||| ||||||||| |||| ||||| ||||||||    
T  10640032 acagcttatgacatttttcataagctttttctagcttattttcataagttctccaaaatagtttatgtaaacaact 10639957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 18351776 - 18351831
Alignment:
Q  116 ttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| |||||||||||    
T  18351776 ttcaaacttgagaccttgagacaagcacacttcaaggtctcaagtctacaccacca 18351831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 29588807 - 29588850
Alignment:
Q  188 ttatataagtgattatgtataagctatttctataataaaatata 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  29588807 ttatataagtgcttatgtataagctatttctataacaaaatata 29588850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 36318831 - 36318776
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| ||||||||||| || ||||  ||||||||||||||||||||||||||||||    
T  36318831 agctgttttcagcttatttacataaattctccaagatagcttatgaaaacaactta 36318776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 552
Target Start/End: Original strand, 7319029 - 7319071
Alignment:
Q  510 tcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  7319029 tcagcttattttcataagttctccaagatagcttatgaaaaca 7319071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 7907933 - 7907883
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||||||||| | ||||||||| ||||||| |||||||||||    
T  7907933 ttttcagcttaatttcataagctctccaagacagcttatcaaaacaactta 7907883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 9202739 - 9202816
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| | || || |||| ||| ||||||| ||||||| ||||| ||||||| |||||||||||| ||||    
T  9202739 acagcttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagctta 9202816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 16247136 - 16247185
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcctacaccac 169  Q
    |||||||||||||||||| |||||||| ||||||| |||||| |||||||    
T  16247136 aacctgagaccttgataggagcacactgcaaggtcccaagccaacaccac 16247185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 32703268 - 32703344
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||| ||| || | || ||||||||||| ||| |||  |||||| |||||||||||||||||||||||    
T  32703268 acagcttatgacacgttt-ataaactgttttcagcttatttttataaattctcctagatagcttatgaaaacaactta 32703344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 7985026 - 7984978
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaa 550  Q
    |||| ||||||||||| |||||||  |||||||||||||||||||||||    
T  7985026 agctgttttcagcttattttcataaattctccaagatagcttatgaaaa 7984978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 14714979 - 14714943
Alignment:
Q  191 tataagtgattatgtataagctatttctataataaaa 227  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14714979 tataagtgattatgtataagctatttctataacaaaa 14714943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 19373300 - 19373257
Alignment:
Q  128 accttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  19373300 accttgagagtagcacactccaaggtctcaagccaacaccacca 19373257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 32340319 - 32340385
Alignment:
Q  95 agaaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcct 162  Q
    |||||||||||| || |||||| | ||||| ||||||||| || |||||||||||||||| |||||||    
T  32340319 agaaattggcatcggtaggatt-cgaacctaagaccttgagaggagcacactccaaggtcccaagcct 32340385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 615
Target Start/End: Complemental strand, 39594859 - 39594753
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacattattttaacttttcctatagaa 606  Q
    ||||||||||| ||||||| ||||  ||||||| |||||||||||| |||||||| |||        |||||| || |||||||| ||||| ||||||||    
T  39594859 ttttcagcttattttcataagttcaacaagatatcttatgaaaacagcttacaacttatgcgaaaa-caattt-actttattttatctttttctatagaa 39594762  T
Q  607 atagcttat 615  Q
    |||||||||    
T  39594761 atagcttat 39594753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 559
Target Start/End: Complemental strand, 40426844 - 40426765
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttaca 559  Q
    |||||||||| || |||| || ||||||||| |||||| |||| || ||||||||||| |||||| | ||||| ||||||    
T  40426844 acagcttatgccatttttcataagcttttttaagcttattttcgtaagttctccaagacagcttacggaaacagcttaca 40426765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 10272449 - 10272499
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| |||||||   |||||||||| ||||||||||||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaactta 10272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 12242728 - 12242774
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    ||||||||||| || |||| | |||||||||||||||||||||||||    
T  12242728 ttttcagcttacttccataagctctccaagatagcttatgaaaacaa 12242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 12425623 - 12425573
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||| |||| ||||||| ||||||||||||||||| |||||||| ||||    
T  12425623 ttttcaacttattttcataagttctccaagatagcttgtgaaaacagctta 12425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 557
Target Start/End: Original strand, 16457938 - 16458047
Alignment:
Q  450 ttttgtaagaccgattgggagaacttaagca--cagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatga 547  Q
    |||||| |||| | ||||||||||||| | |  |||||||||||| |||| || |||| ||||||| ||| ||||| | |||||||||  ||||| || |    
T  16457938 ttttgtgagactgtttgggagaacttatgaaaacagcttatgacagttttcataagctcttttcagtttattttcacaagttctccaatttagctcataa 16458037  T
Q  548 aaacaactta 557  Q
    ||||||||||    
T  16458038 aaacaactta 16458047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 17368728 - 17368678
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| || ||||   |||||||||||||||||||||||||||||    
T  17368728 ttttcagcttatttccataacctctccaagatagcttatgaaaacaactta 17368678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 18543215 - 18543264
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| | |||||| ||||||||||||||||||||||    
T  18543215 ttttcagctta-tttcataagctctccaggatagcttatgaaaacaactta 18543264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 557
Target Start/End: Complemental strand, 32942658 - 32942620
Alignment:
Q  519 tttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  32942658 tttcataagttctccaagatagcttatgaaaacagctta 32942620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 557
Target Start/End: Complemental strand, 36145310 - 36145280
Alignment:
Q  527 gttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||||||||||||||||||||    
T  36145310 gttctccaagatagcttatgaaaacaactta 36145280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 7674700 - 7674655
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||| |  |||||||||||||||||||||||||    
T  7674700 ttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 545
Target Start/End: Original strand, 7705989 - 7706054
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttat 545  Q
    ||||||||||||| |||| | | ||||||||| ||||| ||||| | ||||||||| |||||||||    
T  7705989 acagcttatgacagttttcacctgcttttttcggcttattttcacaagttctccaatatagcttat 7706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 545
Target Start/End: Original strand, 12857720 - 12857761
Alignment:
Q  504 cttttttcagcttaatttcatatgttctccaagatagcttat 545  Q
    |||||||||||||| ||||||| ||||||||| |||||||||    
T  12857720 cttttttcagcttattttcataagttctccaatatagcttat 12857761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 15485426 - 15485467
Alignment:
Q  120 aacctgagaccttgatagaagcacactccaaggtctcaagcc 161  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  15485426 aacctgagaccttgagaggagcacactccaaggtcccaagcc 15485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 614
Target Start/End: Original strand, 32544878 - 32544911
Alignment:
Q  581 acattattttaacttttcctatagaaatagctta 614  Q
    ||||||||||||||||| ||||||||||||||||    
T  32544878 acattattttaactttttctatagaaatagctta 32544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 37611332 - 37611295
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  37611332 atataagtgcttatgtaaaagctatttctataataaaa 37611295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 37788062 - 37788025
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  37788062 atataagtgcttatgtaaaagctatttctataataaaa 37788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 555
Target Start/End: Complemental strand, 58816 - 58746
Alignment:
Q  485 ttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaact 555  Q
    |||||||| |||| || ||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||    
T  58816 ttatgacaattttcataagcttttttcaacttaatttcataagttcttcaacatagcttatgaaaacaact 58746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 27028910 - 27028833
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||||||| |||| |||| || |||| ||||||||||| ||||||| | |||||||||||||||||||||||| ||||    
T  27028910 acagcttaggacatttttcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagctta 27028833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 38648430 - 38648345
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    |||||| |||||| || | || ||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||| | |||||||    
T  38648430 acagctcatgacagttctcataagcttttttaagcgtaatttcataagttctacaagatagcttatgaaaacaactcataacatat 38648345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 487 - 624
Target Start/End: Original strand, 25930552 - 25930688
Alignment:
Q  487 atgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatatnnnnnnngcaatttaacatta 586  Q
    |||||||||||  | |||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||| | |||||        || |||||  |||    
T  25930552 atgacacttttcgtaagcttttttcagcttactatcacaagttctccaagatagcttatgaaaacaatttaaagcatatacaaaaa-cattttaatttta 25930650  T
Q  587 ttttaacttttcctatagaaatagcttatttaagctta 624  Q
    ||| | | ||||||||||||||||||||| ||||||||    
T  25930651 tttcatcctttcctatagaaatagcttatgtaagctta 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 564
Target Start/End: Original strand, 35534604 - 35534688
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacata 564  Q
    ||||||||||||| |||| |  |||||||||| ||||| ||||||| ||||||||| ||| |||||||||||||| || ||||||    
T  35534604 acagcttatgacaattttaacaagcttttttcggcttactttcataagttctccaatataacttatgaaaacaacatataacata 35534688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 9956832 - 9956882
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaactta 9956882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 30251445 - 30251530
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaacttacaacatat 565  Q
    |||||||||  || |||| || |||||||| ||||||| ||||||| ||  |||||||||||||||||||||| |||| |||||||    
T  30251445 acagcttattgcatttttcataagctttttacagcttattttcataagtggtccaagatagcttatgaaaacagcttataacatat 30251530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 38874703 - 38874648
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| |||| |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  38874703 agctatttttagcttattttcatatgttctccaaaatagcttatgaaaacagctta 38874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 557
Target Start/End: Complemental strand, 10114541 - 10114491
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||| ||||    
T  10114541 ttttcagcttattttcatatgttctccaatatagctaatgaaaacagctta 10114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 34778807 - 34778753
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca 171  Q
    |||||| ||||||||||| || |||||||| |||||||||||||| |||||||||    
T  34778807 tcaaacttgagaccttgaaaggagcacactgcaaggtctcaagccaacaccacca 34778753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 22268937 - 22269006
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||| ||||||||||| |  |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  22268937 tcaaacttgagaccttgagaagagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 22269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 40136966 - 40137015
Alignment:
Q  117 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacac 166  Q
    |||||||||||||||||| || |||||||||||||||| |||||| ||||    
T  40136966 tcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacac 40137015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 43504814 - 43504753
Alignment:
Q  496 tttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||| |||| ||||||||||| || |||| ||||||||||||||||||| |||||| ||||    
T  43504814 tttataagctgttttcagcttatttccataagttctccaagatagcttataaaaacatctta 43504753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 4558724 - 4558764
Alignment:
Q  187 attatataagtgattatgtataagctatttctataataaaa 227  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  4558724 attatgtaagtgtttatgtataagctatttctataataaaa 4558764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 8536189 - 8536150
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaata 229  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  8536189 atataagtgcttatgtataagctatttctataacaaaata 8536150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 26688935 - 26688868
Alignment:
Q  120 aacctgagaccttgat-agaagcacactccaaggtctcaagcctacaccaccaagtcaacccatgtgg 186  Q
    |||||||||||||||  || |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  26688935 aacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 26688868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 43717950 - 43718005
Alignment:
Q  502 agcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| |||| |||||| ||||||| |||||||||||||||||||| ||||| ||||    
T  43717950 agctgtttttagcttactttcataagttctccaagatagcttatgcaaacagctta 43718005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 553
Target Start/End: Complemental strand, 16347262 - 16347196
Alignment:
Q  487 atgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaa 553  Q
    ||||||||||| || |||||| ||||||||||| ||||| ||||  |||||||| |||| |||||||    
T  16347262 atgacacttttcataagctttattcagcttaatatcataagttcaacaagatagtttataaaaacaa 16347196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 559
Target Start/End: Original strand, 29891061 - 29891091
Alignment:
Q  529 tctccaagatagcttatgaaaacaacttaca 559  Q
    |||||||||||||||||||||||||||||||    
T  29891061 tctccaagatagcttatgaaaacaacttaca 29891091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 31716218 - 31716284
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatg 546  Q
    ||||||||||||| | || || |||||||||||||||| ||  |||  |||||||||||||||||||    
T  31716218 acagcttatgacattcttcataagcttttttcagcttatttctataacttctccaagatagcttatg 31716284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 1433474 - 1433511
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  1433474 atataagtggttatgtataagttatttctataataaaa 1433511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 1930114 - 1930037
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    |||| |||||||| | || || |||| ||||||||||| ||||| | | || ||||||||||||||||||||| ||||    
T  1930114 acagtttatgacattgttcataagctgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagctta 1930037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 3645957 - 3645916
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaatata 231  Q
    ||||||||| || |||||||||||||||||||| ||||||||    
T  3645957 atataagtgcttgtgtataagctatttctataagaaaatata 3645916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 556
Target Start/End: Complemental strand, 4762561 - 4762512
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactt 556  Q
    ||||||||||| || |||| | ||| ||||||||||||||||||||||||    
T  4762561 ttttcagcttatttacataagctcttcaagatagcttatgaaaacaactt 4762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Complemental strand, 7646192 - 7646151
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttat 615  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  7646192 caatttaactttattttaccttttcttatagaaatagcttat 7646151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 552
Target Start/End: Complemental strand, 26215529 - 26215496
Alignment:
Q  519 tttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||||||||||||||||||||    
T  26215529 tttcatatgttttccaagatagcttatgaaaaca 26215496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Complemental strand, 34236068 - 34236035
Alignment:
Q  629 ctgcaaataagttgtttatccaaacagggccata 662  Q
    |||||||||||||||||||||||||||| |||||    
T  34236068 ctgcaaataagttgtttatccaaacaggaccata 34236035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 35535002 - 35534965
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  35535002 atataagtgcttatatataagctatttctataataaaa 35534965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 43533744 - 43533777
Alignment:
Q  138 aagcacactccaaggtctcaagcctacaccacca 171  Q
    |||||||||||||||||||||||| |||||||||    
T  43533744 aagcacactccaaggtctcaagccaacaccacca 43533777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 44236841 - 44236886
Alignment:
Q  507 ttttcagcttaatttcatatgttctccaagatagcttatgaaaaca 552  Q
    ||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  44236841 ttttcagcttattttcataagctctccaatatagcttatgaaaaca 44236886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 22310 - 22233
Alignment:
Q  480 acagcttatgacactttttatcagcttttttcagcttaatttcatatgttctccaagatagcttatgaaaacaactta 557  Q
    ||||||||||||| ||||  | |||||||||||||||| ||||||| ||| ||||| ||||||||||| |||| ||||    
T  22310 acagcttatgacaattttcgtaagcttttttcagcttattttcataagttttccaacatagcttatgataacagctta 22233  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 614
Target Start/End: Complemental strand, 58923 - 58883
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagctta 614  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  58923 caatttaactttattttaacttttcctataaaaatagctta 58883  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Original strand, 21362 - 21403
Alignment:
Q  574 caatttaacattattttaacttttcctatagaaatagcttat 615  Q
    ||||||||| |||||||| ||||||||||| |||||||||||    
T  21362 caatttaactttattttatcttttcctataaaaatagcttat 21403  T

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Target: scaffold0167 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 557
Target Start/End: Complemental strand, 17308 - 17278
Alignment:
Q  527 gttctccaagatagcttatgaaaacaactta 557  Q
    |||||||||||||||||||||||||||||||    
T  17308 gttctccaagatagcttatgaaaacaactta 17278  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 1215 - 1178
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  1215 atataagtgcttatgtataagctatttctataacaaaa 1178  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 2760 - 2797
Alignment:
Q  190 atataagtgattatgtataagctatttctataataaaa 227  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  2760 atataagtgcttatgtataagctatttctataacaaaa 2797  T

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