View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_20 (Length: 403)
Name: NF12579_low_20
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 29246210 - 29245988
Alignment:
| Q |
5 |
agaagcagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatata |
104 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29246210 |
agaaccagagacgatccatatttgacccaagctgaattcatttgggctttcaacatggggggcccacacgtttattatagcctgtgctccatagtatata |
29246111 |
T |
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| Q |
105 |
tcccctctcacatatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaacatacttt |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
29246110 |
tcccctctcacaaatccaactgaatgctatgcagtgtggagcaatttgttatcattggttagcatataaataaatgaaatcaaaatttagaccatacatt |
29246011 |
T |
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| Q |
205 |
tttgtacagttaatgcgtaaggagact |
231 |
Q |
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||||||| |||||||||||||||| |
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| T |
29246010 |
tttgtac----aatgcgtaaggagact |
29245988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 29254441 - 29254311
Alignment:
| Q |
10 |
cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc |
109 |
Q |
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||||||||||||| ||||| |||||||| ||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||| |||| |||| || |
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| T |
29254441 |
cagagacgatccacatttgtgccaagcttaattcatctaggttttcaacatggggggcccacacatttatggtagcctgtgctccatggtatctatctcc |
29254342 |
T |
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| Q |
110 |
tctcacatatccaactgaatgctatgcagtg |
140 |
Q |
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| T |
29254341 |
agtcacagacccaattgaatgctgtgcagtg |
29254311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 29245873 - 29245824
Alignment:
| Q |
341 |
tttgagagacaaaatatataagtttctatgattgcataccagatgtccat |
390 |
Q |
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| T |
29245873 |
tttgagagacaaaatatataagtttctatgattgcataccagatgtccat |
29245824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 29224481 - 29224386
Alignment:
| Q |
14 |
gacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc |
109 |
Q |
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||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| ||| |||| ||| |||||||| |
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| T |
29224481 |
gacgatccacatttgagccaagctgaattcattagggctttccacatgcggggcccacacgcttatggtagcctttgcgccatggtagatatcccc |
29224386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 29364783 - 29364704
Alignment:
| Q |
17 |
gatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccat |
96 |
Q |
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|||||| |||||||||||||||||||||| | | ||||| || |||||||||||||||||||| |||||| |||||||| |
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| T |
29364783 |
gatccacatttgagccaagctgaattcatttggactttccacttggggggcccacacgtttattgtagcctttgctccat |
29364704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 29213783 - 29213910
Alignment:
| Q |
10 |
cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccc |
109 |
Q |
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|||||| |||||||||||||| ||||||||||||| | | ||||| || || ||| ||||||| ||||| |||| | ||||||||| || |||||| |
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| T |
29213783 |
cagagatgatccatatttgagataagctgaattcatatggactttccacttgtgggacccacacatttatgctagcttttgctccataatactcatcccc |
29213882 |
T |
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| Q |
110 |
tctcacatatccaactgaatgctatgca |
137 |
Q |
| |
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|||||||||||||||| ||||| |||| |
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| T |
29213883 |
actcacatatccaactgcatgctgtgca |
29213910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 14496644 - 14496744
Alignment:
| Q |
32 |
caagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatatccaactgaatgc |
131 |
Q |
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|||||||||||||| |||| || | ||| | ||||||||||||||||| |||||| ||||||||||||| || || ||||||||||||||| |||| |
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| T |
14496644 |
caagctgaattcatattggtttgctacacgtggggcccacacgtttatgctagcctttgctccatagtattgatttccagtcacatatccaactgcatgc |
14496743 |
T |
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| Q |
132 |
t |
132 |
Q |
| |
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| |
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| T |
14496744 |
t |
14496744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 43814554 - 43814619
Alignment:
| Q |
10 |
cagagacgatccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgttta |
78 |
Q |
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|||||| || ||||||||||||||| |||||| ||||| ||||| ||||| |||||||||||||||| |
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| T |
43814554 |
cagagaggacccatatttgagccaaactgaat---tcttgactttccacatgtggggcccacacgttta |
43814619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 30928679 - 30928808
Alignment:
| Q |
20 |
ccatatttgagccaagctgaattcatcttggctttcaacatggggggcccacacgtttataatagcctgtgctccatagtatatatcccctctcacatat |
119 |
Q |
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||||||||||| |||||||||||||| || ||| ||||| || ||||||| ||||| |||||| ||||||||||||| ||| || ||||| | |
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| T |
30928679 |
ccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctccagtcacagac |
30928778 |
T |
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| Q |
120 |
ccaactgaatgctatgcagtgtggagcaat |
149 |
Q |
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||| |||||||| |||||||| ||||||| |
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| T |
30928779 |
ccatatgaatgctgtgcagtgtagagcaat |
30928808 |
T |
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