View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_21 (Length: 387)
Name: NF12579_low_21
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 37859104 - 37859456
Alignment:
| Q |
20 |
cttcataatcctcatcatcaccatcataatcaaaaacagtctcaaaaatactcaacctaagcctaccatcaacacgttctgcatggaaataaggagtagt |
119 |
Q |
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| T |
37859104 |
cttcataatcctcatcatcaccatcataatcaaaaacagtctcaaaaatactcaacctaagcctaccatcaacacgttctgcatggaaataaggagtagt |
37859203 |
T |
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| Q |
120 |
agaaggagaagcaatagcttctaatatcaacctaccaccttcgcgatgaggcctaacatgaacaccaccaaaatcagttattgatgtgagtggtggagga |
219 |
Q |
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| T |
37859204 |
agaaggagaagcaatagcttctaatatcaacctaccaccttcgcgatgaggcctaacatgaacaccaccaaaatcagttattgaagtgagtggtggagga |
37859303 |
T |
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| Q |
220 |
aagttacaagaagctttattaactcttctagacacacaattattcatgttgttattgttaacatcatttcttgtgtcagaagaaaataatgaaacatcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859304 |
aagttacaagaagctttattaactcttctagacacacaattattcatgttgttattgttaacatcatttcttgtgtcagaagaaaataatgaaacatcaa |
37859403 |
T |
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| Q |
320 |
tatcactactttcaccagcattgctaccagtttcactcccaaggctttcagtg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859404 |
tatcactactttcaccagcattgctaccagtttcactcccaaggctttcagtg |
37859456 |
T |
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