View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_22 (Length: 385)
Name: NF12579_low_22
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 1088208 - 1087857
Alignment:
| Q |
15 |
gagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1088208 |
gagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaac |
1088109 |
T |
|
| Q |
115 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
214 |
Q |
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| T |
1088108 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
1088009 |
T |
|
| Q |
215 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcaccttt |
314 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
1088008 |
tatttgcatcaacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccacatctccaatcttcgtcaccttt |
1087909 |
T |
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| Q |
315 |
gcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
366 |
Q |
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| T |
1087908 |
gcgcacacatccttgtgtccaatttgatgcgtcccaattttttggcgattta |
1087857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 1047734 - 1047383
Alignment:
| Q |
15 |
gagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||| |
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| T |
1047734 |
gagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaac |
1047635 |
T |
|
| Q |
115 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
1047634 |
catatagaacaaccactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtca |
1047535 |
T |
|
| Q |
215 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcaccttt |
314 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || |||||||||||||||| ||||| |||| |||||| ||||| |
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| T |
1047534 |
tattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgccttt |
1047435 |
T |
|
| Q |
315 |
gcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1047434 |
gcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggtgattta |
1047383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 1072544 - 1072196
Alignment:
| Q |
15 |
gagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaac |
114 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||| |
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| T |
1072544 |
gagaagaatatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaac |
1072445 |
T |
|
| Q |
115 |
catatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
214 |
Q |
| |
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||||| ||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1072444 |
catatggaacatccactaccatcact---cacatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtca |
1072348 |
T |
|
| Q |
215 |
tattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcaccttt |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || ||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
1072347 |
tattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttcaccttt |
1072248 |
T |
|
| Q |
315 |
gcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
1072247 |
gcgcacacatccttgtgtccaatttgatgcgtaccaattttgtggtgattta |
1072196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 1104748 - 1104410
Alignment:
| Q |
28 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaac |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||| | |||||||| |||||||| | |||||||||||||||||||||||||||| |
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| T |
1104748 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
1104649 |
T |
|
| Q |
128 |
cactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaac |
227 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
1104648 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
1104549 |
T |
|
| Q |
228 |
ccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacctttgcgcacacatcct |
327 |
Q |
| |
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||||| ||||| ||| || ||||||||||| | | ||||| || |||||||||||||||| ||||| |||| |||||| ||||| |||||||||||| |
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| T |
1104548 |
ccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgccttttcgcacacatcct |
1104449 |
T |
|
| Q |
328 |
tgtgtccaatttgatgcgtcccaattttgtggcgattta |
366 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||| |
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| T |
1104448 |
tgtgtccaattaaatgtgtcccaattttgtggcgattta |
1104410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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