View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_27 (Length: 354)
Name: NF12579_low_27
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 38869550 - 38869215
Alignment:
| Q |
1 |
tctaaaattattttccattgaatgttgtctatcttctcattgaatctgttttctgtttttgatgcacttcaaatatatgatcaatgacgtttctgcattg |
100 |
Q |
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| T |
38869550 |
tctaaaattattttccattgaatgttgtctatcttctcgttgaatctgttttctgtttttgatgcacttcaaatatatgatcaatg-cgtttctgcatta |
38869452 |
T |
|
| Q |
101 |
tgattttaaatgataagaacgaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaa |
200 |
Q |
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| T |
38869451 |
tgattttaaatgataagaacgaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaa |
38869352 |
T |
|
| Q |
201 |
gcatattcacctgatttgttaccttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggtt |
300 |
Q |
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| T |
38869351 |
gcatattcacctgatttgttaccttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggtt |
38869252 |
T |
|
| Q |
301 |
gaagataggaaggttgtttcccttggtgggaaggtga |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38869251 |
gaagataggaaggttgtttcccttggtgggaaggtga |
38869215 |
T |
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