View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_3 (Length: 610)
Name: NF12579_low_3
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 11545505 - 11546078
Alignment:
| Q |
19 |
attatatatgctccatctgacagacaaactatggatgtggctttaagaggtgaagactctaaagagctaccaatccttccatatggttttgttgtatgtt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11545505 |
attatatatgctccatctgacagacaaactatggatgtggctttaagaggtgaagactctaaagagctaccaatccttccatatggttttgttgtctgtt |
11545604 |
T |
|
| Q |
119 |
caaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtcc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545605 |
caaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtcc |
11545704 |
T |
|
| Q |
219 |
acatgaaattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545705 |
acatgaaattgaccaagtgcttaatgtggaagatattactgatatcaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctct |
11545804 |
T |
|
| Q |
319 |
atttaacaatttggac--gtagttgttcattttgttgcttaagcaaacaaaataaatcaacgcttttctttgtattatgttataattaagtttgcttgac |
416 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
11545805 |
atttaacaatttggacgtgtagttgttcattttgttgcttaagcaaacaaaataaatcaatgcttttctttgtattatgtta----taagtttgcttgac |
11545900 |
T |
|
| Q |
417 |
attttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545901 |
attttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttat |
11546000 |
T |
|
| Q |
517 |
tgctcaaaaagttagagctgttaatttggttcaagagaatttccttgattgtgggagcatttgagggttccatttcca |
594 |
Q |
| |
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| T |
11546001 |
tgctcaaaaagttagagctgttaatttggttcaagagaatttccttgattgtgggagcatttgagagttccatttcca |
11546078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 11558951 - 11559292
Alignment:
| Q |
20 |
ttatatatgctccatctgacagacaaactatggatgtggctttaagaggtgaagactctaaagagctaccaatccttccatatggttttgttgtatgttc |
119 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||| ||||| |
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| T |
11558951 |
ttatatatgctccaattgacagaaaaactatggatgtggctttaagaggtgaagactccaaagagttaccaatccttccatatggtcttattgtctgttc |
11559050 |
T |
|
| Q |
120 |
aaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtcca |
219 |
Q |
| |
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||||| |||| |||||||||| |||||||||||||| ||||| | |||||||||||||| ||| | || ||||||||||||| || |
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| T |
11559051 |
aaagaaccaagcaaatcttaatgcaccatttggagcatctaagagcattgaagatggctcattgattactttggcagcccaaa---------------ca |
11559135 |
T |
|
| Q |
220 |
catgaaattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctcta |
319 |
Q |
| |
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||| ||||| |||||||||||||||||| | ||| |||||| |||| || |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
11559136 |
tatgcaattggccaagtgcttaatgtggattctcttaatgatatcaacagtcaattggcatctactattctaaatgtgaaggatgctcttatgagttcta |
11559235 |
T |
|
| Q |
320 |
tttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11559236 |
tttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
11559292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 403 - 552
Target Start/End: Original strand, 11559350 - 11559493
Alignment:
| Q |
403 |
taagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatcta-ttctatgttattgttatcagtta |
501 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||| |
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| T |
11559350 |
taagtttgcttgacattttaaatcttataataatacatgactttggtcttttctctatgaatgatgaattgatctatttcta------tgttttcagtta |
11559443 |
T |
|
| Q |
502 |
aagctgttaatttattgctcaaaaagttagagctgttaatttggttcaaga |
552 |
Q |
| |
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|||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11559444 |
gagctattgatttattg-tcaaaaagttagagcagttaatttggttcaaga |
11559493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 20915824 - 20915470
Alignment:
| Q |
20 |
ttatatatgctccatctgacagacaaactatggatgtggctttaagaggtgaagactctaaagagctaccaatccttccatatggttttgttgtatgttc |
119 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
20915824 |
ttatatatgctccaattgacagaaaaactatgaatgtggctttaataggtgaagactctaaagatttaccaatccttccatatggttttgttgtgtgttc |
20915725 |
T |
|
| Q |
120 |
aaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtcca |
219 |
Q |
| |
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|||||||||||||||| |||| ||| ||||| ||| |||||||||| | ||||||||| |||||||| |||||| |||||||| |||| |||| |||| |
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| T |
20915724 |
aaagagccaaccaaatattaatgcagtatttgaagcatctaacaataattgagatggctcattgttaactttggcatcccaaattatgagtactaatcca |
20915625 |
T |
|
| Q |
220 |
catgaaattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctcta |
319 |
Q |
| |
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||| ||||||||||||| ||||| |||| || |||||||||| ||||| || ||||||||||||||||| | ||| |||||||| || |||||| || |
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| T |
20915624 |
tatgcaattgaccaagtggttaatttggattatgttactgatatcaacacccaattggcaactactattctgcaagtg-aggatgcttttttgagctata |
20915526 |
T |
|
| Q |
320 |
tttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
376 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20915525 |
tttaacaatttgga-atagttgttcattttgttgcttaagcaaacaaaataaatcaa |
20915470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 20916276 - 20916589
Alignment:
| Q |
20 |
ttatatatgctccatctgacagacaaactatggatgtggctttaagaggtgaagactctaaagagctaccaatccttccatatggttttgttgtatgttc |
119 |
Q |
| |
|
||||||||||| || ||| ||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
20916276 |
ttatatatgcttcaattgatagaaaaactatgaatgtggctttaaggggtgaagactctaaagatttaccaatccttccatatggttttgttgtctgttc |
20916375 |
T |
|
| Q |
120 |
aaagagccaaccaaatcttaacgcaccatttggagcgtctaacaatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtcca |
219 |
Q |
| |
|
||||||||||| |||| | || ||| |||||| ||| ||||||| ||||| ||||||||| |||||||| |||||| |||||||| ||| ||||||||| |
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|
| T |
20916376 |
aaagagccaactaaatatgaatgcaacatttgaagcatctaacagtattggagatggctcattgttaactttggcatcccaaatttcgagtactagtcca |
20916475 |
T |
|
| Q |
220 |
catgaaattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctcta |
319 |
Q |
| |
|
||| ||||||| ||||||||||| | || || |||||||||| ||||| || ||||||||||||||||| | |||||||||||||| ||||||| || |
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| T |
20916476 |
tatgcaattgactaagtgcttaattttgattatgttactgatatgaacacccaattggcaactactattctgcaagtgaaggatgctctcatgagctata |
20916575 |
T |
|
| Q |
320 |
tttaacaatttgga |
333 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
20916576 |
tttaacagtttgga |
20916589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 12064035 - 12063987
Alignment:
| Q |
17 |
atattatatatgctccatctgacagacaaactatggatgtggctttaag |
65 |
Q |
| |
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||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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|
| T |
12064035 |
atattatatatgctccaattgacagaaaaactgtggatgtggctttaag |
12063987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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