View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_31 (Length: 328)
Name: NF12579_low_31
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2819709 - 2819388
Alignment:
| Q |
1 |
aatttggtttccctttatcaccttgaagtgtgatctcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccatcacaatcccc |
100 |
Q |
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| T |
2819709 |
aatttggtctccctttatcaccttgaagtgtgatttcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccatcacaatcccc |
2819610 |
T |
|
| Q |
101 |
agtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaattttctttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2819609 |
agtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaattttctttgtt |
2819510 |
T |
|
| Q |
201 |
tggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgctggccatattggaaagggacatttattgtgtatat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2819509 |
tggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgcaggccatattggaaagggacatttattgtgtatat |
2819410 |
T |
|
| Q |
301 |
agaatgttgcttgatgtccatc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
2819409 |
agaatgttgcttgatgtccatc |
2819388 |
T |
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