View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_34 (Length: 312)
Name: NF12579_low_34
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 47436047 - 47435754
Alignment:
| Q |
19 |
aataaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagcatg |
118 |
Q |
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| T |
47436047 |
aataaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagcatg |
47435948 |
T |
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| Q |
119 |
atagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggtttcta |
218 |
Q |
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| T |
47435947 |
atagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggtttcta |
47435848 |
T |
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| Q |
219 |
tggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggt |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435847 |
tggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggt |
47435754 |
T |
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