View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_38 (Length: 294)
Name: NF12579_low_38
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 2727110 - 2726965
Alignment:
| Q |
12 |
aagcagagacattaaattaaatggaatgaaacaaagatcaagtccagtaaaaagtacatgtgttgtacaccaaatagatgccagacacctaatccaatca |
111 |
Q |
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| T |
2727110 |
aagcagagacattaaattaaatggaatgaaacaaagatcaagtccagtaaaaagtacatgtgttgtacaccaaatagatgccagacacctaatccaatca |
2727011 |
T |
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| Q |
112 |
caataaaatatattgcttgctatgtatattttagaagtgagagaga |
157 |
Q |
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| T |
2727010 |
caataaaatatattgcttgctatgtatattttagaagtgagagaga |
2726965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 2726919 - 2726832
Alignment:
| Q |
207 |
cttccagaaggaaaacaaattcatcaagcagtgatccataagaaaaaacagagattatggctacacagtatgatgtccatctcattga |
294 |
Q |
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| T |
2726919 |
cttccagaaggaaaacaaattcatcaagcagtgatccataagaaaaaacagagattatggctacacagtatggtgtcactctcattga |
2726832 |
T |
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