View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_39 (Length: 285)
Name: NF12579_low_39
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_39 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 7083883 - 7084139
Alignment:
| Q |
14 |
agagactgtgtacatgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7083883 |
agagactgtgtacatgcatcaacccatggggtttagggatccgaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcc |
7083982 |
T |
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| Q |
114 |
cctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacag |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7083983 |
cctcgggcttggtacaagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacag |
7084082 |
T |
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| Q |
214 |
ctatggcttacattcttttatatgtggatgatattatactgacaacctcctctgatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7084083 |
ctatggcttacattcttttatatgtggatgatattatactgacagcctcctctgatg |
7084139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 1852772 - 1853028
Alignment:
| Q |
14 |
agagactgtgtacatgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcc |
113 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1852772 |
agagactgtgtacatgcatcaacccctggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcc |
1852871 |
T |
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| Q |
114 |
cctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacag |
213 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1852872 |
cctcgggcttggtacaagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggcacaa |
1852971 |
T |
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| Q |
214 |
ctatggcttacattcttttatatgtggatgatattatactgacaacctcctctgatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1852972 |
ctatggcttacattcttttatatgtggatgatattatactgacagcctcctctgatg |
1853028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 36649221 - 36649477
Alignment:
| Q |
14 |
agagactgtgtacatgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36649221 |
agagactgtgtacatgcatcaacccatggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggcc |
36649320 |
T |
|
| Q |
114 |
cctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacag |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
36649321 |
cctcgggcttggtacaagagatttgctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccagaaaggcacaa |
36649420 |
T |
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| Q |
214 |
ctatggcttacattcttttatatgtggatgatattatactgacaacctcctctgatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36649421 |
ctatggcttacattcttttatatgtggatgatattatactgacagcctcctctgatg |
36649477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 18392563 - 18392719
Alignment:
| Q |
94 |
tatatgggctcaaacaggcccctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctt |
193 |
Q |
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||||||| || |||||||| ||| | ||||||| || ||||| | |||||||||| | | |||||||||||||| || | || ||||| |||||||| |
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| T |
18392563 |
tatatggtctaaaacaggctcctagaacttggtataaacgatttgcagattatgtttattcaattggtttttctcaaagaaattgtgatcactctctctt |
18392662 |
T |
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| Q |
194 |
tatttaccggaaaggtacagctatggcttacattcttttatatgtggatgatattat |
250 |
Q |
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||| ||| ||||||||| ||| |||||| | || |||||||||||||||||||| |
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| T |
18392663 |
tatctacaagaaaggtactcatatagcttacctcctcttatatgtggatgatattat |
18392719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 21603 - 21859
Alignment:
| Q |
14 |
agagactgtgtacatgcatcaacccatggggtttcgggatccgaatcttcctaatcatgtatgcttgttnnnnnnntctctatatgggctcaaacaggcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21603 |
agagactgtgtacatgcatcaacccatggggtttagggatccaaatcttcctaatcatgtatgcttgttaaagaaatctctatatgggctcaaacaggaa |
21702 |
T |
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| Q |
114 |
cctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctttatttaccggaaaggtacag |
213 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21703 |
cctcgggcttggtacaagagatttgctgattatgtttatactattggtttttctcacagtacttcggatcattctctctttatttaccagaaaggtacat |
21802 |
T |
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| Q |
214 |
ctatggcttacattcttttatatgtggatgatattatactgacaacctcctctgatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21803 |
ctatggcttacattcttttatatgtggatgatattatactgacagcctcctctgatg |
21859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 28080644 - 28080800
Alignment:
| Q |
94 |
tatatgggctcaaacaggcccctcgggcttggtacaagagattttctgattatgtttctactattggtttttctcacagtacttcggatcattctctctt |
193 |
Q |
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||||||| || |||||||| ||| | |||||||||| ||||| | |||||||||||| | ||||| || ||||| || | || ||||| |||||||| |
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| T |
28080644 |
tatatggtctaaaacaggctcctagaacttggtacaaacgatttgcagattatgtttcttcaattggcttctctcaaagcaattgtgatcactctctctt |
28080743 |
T |
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| Q |
194 |
tatttaccggaaaggtacagctatggcttacattcttttatatgtggatgatattat |
250 |
Q |
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|| ||| |||||| || ||| |||||| | || |||||||||||||||||||| |
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| T |
28080744 |
tagctacaagaaaggcactcatatagcttacctcctcttatatgtggatgatattat |
28080800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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