View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_4 (Length: 584)
Name: NF12579_low_4
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 14 - 567
Target Start/End: Complemental strand, 11763380 - 11762827
Alignment:
| Q |
14 |
atgaaaggtatcagctttctgaaatgacaaagtctgctattgctgttgctgagcaaaaggcaagtagtgctggatccgctatcatgagcaattcttatgt |
113 |
Q |
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| T |
11763380 |
atgaaaggtatcagctttctgaaatgacaaagtctgctattgctgttgctgagcaaaaggcaagtagtgctggatccgctatcatgagcaattcttatgt |
11763281 |
T |
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| Q |
114 |
cttaaccggagcttcatggctgtcgagtgcgtttagcgttgttgccaaggcagctgaggatgtcagcacgatgaccatggagaaggttgaacaagctgag |
213 |
Q |
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| T |
11763280 |
cttaactggagctttatggctgtcgagtgcgtttagcgttgttgccaaggcagctgaggatgtcagcacgatgaccatggagaaggttgaacaagctgag |
11763181 |
T |
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| Q |
214 |
gtggaaaataaggagatcatttacagtgaaagaaaagggacggttgatgaatatgctcagatgaactttgaggactctttaaacggcggccctgcagtag |
313 |
Q |
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| T |
11763180 |
gtggaaaataaggagatcatttacagtgaaagaaaagggacggttgatgaatatgctcagatgaactttgaggactctttaaacggcggccctgcagtag |
11763081 |
T |
|
| Q |
314 |
ttcctgttagttctgaaaatgacaataaagctagtaattttctaacttgaactgactcacaattctttaacatccttaaaagcacagctggattgacctt |
413 |
Q |
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| T |
11763080 |
ttcctgttagttctgaaaatgacggtaaagctagtaattttctaacttgaactgactcacaattctttaacatccttaaaagcacagctggattgacctt |
11762981 |
T |
|
| Q |
414 |
catggagtagttattttcatttttcagttgctgcaaatttgttgtacaatgaaaagtttgttgattgttatagtgatgtaaaggtttttcctacagatat |
513 |
Q |
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| T |
11762980 |
gatggaatagttattttcatttttcagttgctgcaaatttgttgtacaatgaaaagtttgttgattgttatagtgatgtaaaggtttttcctacagatat |
11762881 |
T |
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| Q |
514 |
gattcataaacatgatcatcattcatatatactcattctttgttatttcctatc |
567 |
Q |
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| T |
11762880 |
gattcataaacatgatcatcattcatatatactcattctttgttattttctatc |
11762827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 44706467 - 44706246
Alignment:
| Q |
24 |
tcagctttctgaaatgacaaagtctgctattgctgttgctgagcaaaaggcaagtagtgctggatccgctatcatgagcaattcttatgtcttaaccgga |
123 |
Q |
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|||| ||||||||| |||||||||| | ||| ||||||||||||||||||||| ||||||||| || |||||||||||| ||||||| | ||||||| |
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| T |
44706467 |
tcaggtttctgaaaaaacaaagtctgtttatgcggttgctgagcaaaaggcaagtgatgctggatctgcaatcatgagcaatccttatgtatcaaccgga |
44706368 |
T |
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| Q |
124 |
gcttcatggctgtcgagtgcgtttagcgttgttgccaaggcagctgaggatgtcagcacgatgaccatggagaaggttgaacaagctgaggtggaaaata |
223 |
Q |
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||||| ||| |||||||||| ||| |||||||| || |||||||| ||||| | ||| ||||||||||||||||||||| || ||||| || || | |
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| T |
44706367 |
gcttcgtgggtgtcgagtgcaattactgttgttgcaaaagcagctgaagatgtaaccacaatgaccatggagaaggttgaaatggccgaggttgataaga |
44706268 |
T |
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| Q |
224 |
aggagatcatttacagtgaaag |
245 |
Q |
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| |||||||||||||||||||| |
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| T |
44706267 |
aagagatcatttacagtgaaag |
44706246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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