View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_43 (Length: 261)

Name: NF12579_low_43
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_43
NF12579_low_43
[»] chr5 (5 HSPs)
chr5 (19-94)||(38166555-38166630)
chr5 (19-94)||(38173250-38173325)
chr5 (19-94)||(38200474-38200549)
chr5 (19-94)||(11491282-11491357)
chr5 (27-82)||(11484445-11484500)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 38166630 - 38166555
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacc 94  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38166630 tttgtcaccacgaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacc 38166555  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 38173250 - 38173325
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacc 94  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38173250 tttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttttcagccccttcaaaaacaacc 38173325  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 38200474 - 38200549
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacc 94  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38200474 tttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttttcagccccttcaaaaacaacc 38200549  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 11491357 - 11491282
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacc 94  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||  | ||||| || ||||||||    
T  11491357 tttgttaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacc 11491282  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 11484500 - 11484445
Alignment:
Q  27 cacaaattcttttgaaatatctttccagcgtccctttccatgttttttcagcccct 82  Q
    |||||||||| |||||||||||||||| |||||| | ||||||||||||| |||||    
T  11484500 cacaaattctcttgaaatatctttccaacgtcccctaccatgttttttcaccccct 11484445  T

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