View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12579_low_46 (Length: 254)
Name: NF12579_low_46
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_46 |
 | |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0897 (1 HSPs) |
| | |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0304 (2 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 10787275 - 10787023
Alignment:
| Q |
2 |
acggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggga |
101 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10787275 |
acggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcgggga |
10787176 |
T |
|
| Q |
102 |
cacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggat |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||| || || |||||||| |||||| |||||||| |
|
|
| T |
10787175 |
cacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggat |
10787076 |
T |
|
| Q |
202 |
ggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10787075 |
ggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatga |
10787023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 14688517 - 14688770
Alignment:
| Q |
1 |
gacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggg |
100 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
14688517 |
gacggtatcacacctgataccgctacactttttcatgatttttggtctcttttggagacaagaaacgtcgcgcgctatcgcagagatataacgggcgggg |
14688616 |
T |
|
| Q |
101 |
acacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacgggga |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||||||||||||||| ||||| |||||| |
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|
| T |
14688617 |
acacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcggttggtccgtcgtcgattctgcaacaactggcacaactggcgcgggga |
14688716 |
T |
|
| Q |
201 |
tggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14688717 |
tggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatga |
14688770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7360519 - 7360772
Alignment:
| Q |
1 |
gacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggg |
100 |
Q |
| |
|
|||||||||| || |||| ||||| |||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||| |||||||||| || |
|
|
| T |
7360519 |
gacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctcttttggagacacgaaacgtcgcgcgctatcgtagagacataacaggcgtgg |
7360618 |
T |
|
| Q |
101 |
acacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacgggga |
200 |
Q |
| |
|
||||| |||||| || |||||||||||||| || ||||||||||| ||||| || | || ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
7360619 |
acacctctttccgtttcgtttcaggctggtataaaagattactgcctcctcggttgatccgtcgtcgattctgcaacaactggcacaactgtcgcgggga |
7360718 |
T |
|
| Q |
201 |
tggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7360719 |
tgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaatatga |
7360772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 10158015 - 10157909
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||||| || || | |
|
|
| T |
10158015 |
tggtctcttttggagacgaagaatgttgcgcgttatcgcagggagataacgggaggggactcccactttcgcttcgtttcaggctggtacaaaaggttgc |
10157916 |
T |
|
| Q |
143 |
tgccccc |
149 |
Q |
| |
|
||||||| |
|
|
| T |
10157915 |
tgccccc |
10157909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 1730089 - 1729841
Alignment:
| Q |
6 |
tgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacc |
105 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1730089 |
tgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaagaaacgtcgcgcgctatcgcagagagataacaggcggggacacc |
1729990 |
T |
|
| Q |
106 |
cgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggat |
205 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||||||| ||||| |||||||| |||||| |||||||||||| |
|
|
| T |
1729989 |
cgtttccgcttcgtttcaggctggtataagagattactgcctcctcagttggtccgccgtcgattttgcaataactggcacaactgtcacggggatggat |
1729890 |
T |
|
| Q |
206 |
tgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
||||||| ||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
1729889 |
tgagacgcaactatcgaggttatcgccttgctgaggacgagcaatatga |
1729841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 14329048 - 14329301
Alignment:
| Q |
1 |
gacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggg |
100 |
Q |
| |
|
|||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||| || | || |
|
|
| T |
14329048 |
gacggtatcacacctgatgccgctacactttttcatgatttctggtctcttttggagacacgaaacgtcgcgcgctatcgcagagacataacgggtgtgg |
14329147 |
T |
|
| Q |
101 |
acacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacgggga |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||| ||||| || || | ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
14329148 |
acacccgtttccgcttcgtttcaggctggtataaaagattactgcctcctcggttgatttgtcgtcgattctgcaacaactggcacaactgtcgcgggga |
14329247 |
T |
|
| Q |
201 |
tggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14329248 |
tggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatga |
14329301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 18166725 - 18166922
Alignment:
| Q |
43 |
tggtctcttttggagacaataaac-gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagatta |
141 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| || ||||||||||||||| | || |
|
|
| T |
18166725 |
tggtctcttttggagacaaaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtctcaggctggtacaagcggttg |
18166824 |
T |
|
| Q |
142 |
ctgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
||||| || | | || | ||||||||||||||||||||||| || ||| || |||||| | || |||||||||||||| | ||| |||||||| |
|
|
| T |
18166825 |
ctgcctccccagttaatttgtcgtcgattctgcaacaactggcacaattgtcgtggagatggactaaggcgtaactatcgagggtttcatcctgctga |
18166922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 41375532 - 41375723
Alignment:
| Q |
63 |
aaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgc |
162 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41375532 |
aaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttcgc |
41375631 |
T |
|
| Q |
163 |
cgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
|||||||| ||||| |||||| | |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41375632 |
cgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatga |
41375723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 22081063 - 22080839
Alignment:
| Q |
31 |
tttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttca-ggctgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| || | | |||||| |
|
|
| T |
22081063 |
tttcatgatttctggtctcttttggagacaagaaacgtcgcgcgctatcgcagggagataacaggcggggatacccgtttccgcttcgtctaatggctgg |
22080964 |
T |
|
| Q |
130 |
tacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatc |
229 |
Q |
| |
|
||||||||||||||||| || | | | || ||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||| |||| |
|
|
| T |
22080963 |
tacaagagattactgcctccccagttaatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatc |
22080864 |
T |
|
| Q |
230 |
accctgctgaggacgagcaatatga |
254 |
Q |
| |
|
| |||||||| || || |||||||| |
|
|
| T |
22080863 |
atcctgctgaagatgaacaatatga |
22080839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 41375496 - 41375532
Alignment:
| Q |
2 |
acggtgtcagacttgataccgctacactttttcatga |
38 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
41375496 |
acggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 24954828 - 24954584
Alignment:
| Q |
1 |
gacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggg |
100 |
Q |
| |
|
|||||| ||| || |||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||| |||| |||||||||| || |
|
|
| T |
24954828 |
gacggtatcacacctgatgccgctacactttttcatgatttctggtctcttctggagacacgaaacgtcgcgcgatatcgtcgagacataacaggcgtgg |
24954729 |
T |
|
| Q |
101 |
acacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacgggga |
200 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || ||||||||||| |||||| || | || |||||||||||||||| ||||| |||||| |
|
|
| T |
24954728 |
acacctgtttccgcttcgtttcaggctggtataaaagattactgcctcctcgattgatccgtcgtcgattctgcaaca---------actgtcgcgggga |
24954638 |
T |
|
| Q |
201 |
tggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatga |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24954637 |
tggattgagacgcaactatcgaggctatcaccctgctgaggataagcaatatga |
24954584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 23621552 - 23621749
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||| ||||||||||||| || | |
|
|
| T |
23621552 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtttcatgctggtacaagaggttgc |
23621651 |
T |
|
| Q |
143 |
tgccccctcga-ctggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
||||||| | | | |||| ||||||||||||||||||||||| |||||| || |||||||| || || ||||||| ||| | ||| |||||||| |
|
|
| T |
23621652 |
tgccccccccagttaattcgtcgtcgattctgcaacaactggcacaactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctga |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 23195948 - 23196144
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| |||||| ||| |||||||||||| |||||||||| ||||| || |
|
|
| T |
23195948 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataataggaggggactcccatttccgctttgtctcaggctggtttaagaggttgt |
23196047 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
|||| || | | | |||| ||||||||||||||||||||||| |||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
23196048 |
tgcctccccaattaattcgtcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 22643433 - 22643208
Alignment:
| Q |
14 |
ttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccg |
113 |
Q |
| |
|
||||||||||| ||| || |||| || ||||||||||||||||||| ||| ||||||| ||||||||| |||| |||||| ||||| ||| ||||| |
|
|
| T |
22643433 |
ttgataccgctgaactcttcaatgacttttggtctcttttggagacaaaaaatgttgcgcattatcgcagggagacaacaggaggggagtcccatttcca |
22643334 |
T |
|
| Q |
114 |
ctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgt |
213 |
Q |
| |
|
||| || | ||||||||||||||| || || || || | |||| ||||||||||||||||||| ||| |||||| || |||||| | || || |
|
|
| T |
22643333 |
cttcgtcttaggctggtacaagaggttgcttcctcccaagttaattcgtcgtcgattctgcaacaactagcacaactgtcttggagatggactaaggcgc |
22643234 |
T |
|
| Q |
214 |
aactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
||||||||||| | ||| |||||||| |
|
|
| T |
22643233 |
aactatcgagggtttcatcctgctga |
22643208 |
T |
|
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Target: scaffold0051 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 74556 - 74318
Alignment:
| Q |
1 |
gacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcgggg |
100 |
Q |
| |
|
|||||| ||| || |||||||||| ||| || |||| || ||||||||||||||||| | ||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
74556 |
gacggtatcacacctgataccgctgaactcttcaatgagttttggtctcttttggagacgaaaaatgttgcgcgctatcgcagggagataacaggagggg |
74457 |
T |
|
| Q |
101 |
acacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacgggga |
200 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||| |||||||| || | | || ||||||||||||||||||||||| |||||| || || |
|
|
| T |
74456 |
acacccgttttcgcttcgtctcaggctggtacaagaggttactgcctcccaagttaatccgtcgtcgattctgcaacaactggcacaactgtcgtggaga |
74357 |
T |
|
| Q |
201 |
tggattgagacgtaactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
|||| | || |||||||| ||||| ||||| |||||||| |
|
|
| T |
74356 |
tggactaaggcgtaactaccgagggtatcatcctgctga |
74318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 3942 - 4138
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| ||| |||||||||| || || | |
|
|
| T |
3942 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttctgctttgtctcatgctggtacaataggttgc |
4041 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
239 |
Q |
| |
|
|||| || || | ||||| ||| ||||||||||||||||||| |||||| || |||||| | ||||| ||||||||||| | ||| |||||||| |
|
|
| T |
4042 |
tgcctccccggttagttcgtcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctga |
4138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 39018 - 38791
Alignment:
| Q |
15 |
tgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgc |
114 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| | ||| ||| ||||||| |
|
|
| T |
39018 |
tgataccgctgaacttttcaatgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgc |
38919 |
T |
|
| Q |
115 |
tttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgta |
214 |
Q |
| |
|
|| |||||||||||||||| || || |||||||||| | |||||||||||||||||||||||||||| ||||| || |||||| | || || | |
|
|
| T |
38918 |
ttcatttcaggctggtacaaaaggttgctgccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgca |
38819 |
T |
|
| Q |
215 |
actatcgaggctatcaccctgctgagga |
242 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |
|
|
| T |
38818 |
actatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 32720 - 32947
Alignment:
| Q |
15 |
tgataccgctacactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgc |
114 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| | ||| ||| ||||||| |
|
|
| T |
32720 |
tgataccgctgaacttttcaatgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgc |
32819 |
T |
|
| Q |
115 |
tttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgta |
214 |
Q |
| |
|
|| |||||||||||||||| || || |||||||||| | |||||||||||||||||||||||||||| ||||| || |||||| | || || | |
|
|
| T |
32820 |
ttcatttcaggctggtacaaaaggttgctgccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgca |
32919 |
T |
|
| Q |
215 |
actatcgaggctatcaccctgctgagga |
242 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |
|
|
| T |
32920 |
actatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 19482 - 19335
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||||| || | |
|
|
| T |
19482 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttccacttcgtttcaggctggtacaagaggttgc |
19383 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
191 |
Q |
| |
|
||||||| | | |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19382 |
tgccccc-cagttaattcgtcgtcgattctgcaacaactggcacaactg |
19335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 36072 - 35865
Alignment:
| Q |
35 |
atgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaa |
134 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| ||| || ||||| ||||||||||||||||| |
|
|
| T |
36072 |
atgacttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacaggaggggactcccactttcgcttcgtttcaggctggtacaa |
35973 |
T |
|
| Q |
135 |
gagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccct |
234 |
Q |
| |
|
||| || ||||| || | | |||| || |||||||||||||||||||| ||||| | ||||| ||||||| ||||||||||| | ||| ||| |
|
|
| T |
35972 |
gaggttgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgggctgagacgcaactatcgagggtttcatcct |
35873 |
T |
|
| Q |
235 |
gctgagga |
242 |
Q |
| |
|
|||||||| |
|
|
| T |
35872 |
gctgagga |
35865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 12379 - 12526
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| || | |
|
|
| T |
12379 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggttgc |
12478 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
191 |
Q |
| |
|
|||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
12479 |
tgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
12526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 18130 - 18277
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| || | |
|
|
| T |
18130 |
tggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggttgc |
18229 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
191 |
Q |
| |
|
|||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
18230 |
tgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
18277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 14562329 - 14562533
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| ||||| ||| ||||||||| ||||||||||||||||| || || | |
|
|
| T |
14562329 |
tggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggaggggattcccatttccgcttcgtttcaggctggtacaaaaggttgc |
14562428 |
T |
|
| Q |
143 |
tgccccctcgac-----tggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgct |
237 |
Q |
| |
|
||||||| | | | |||||||||||||||||||||||||||| ||||| || |||||| | || || ||||||||||| | ||| |||||| |
|
|
| T |
14562429 |
tgccccccccccccagttaattcgccgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgct |
14562528 |
T |
|
| Q |
238 |
gagga |
242 |
Q |
| |
|
||||| |
|
|
| T |
14562529 |
gagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 13284471 - 13284670
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattac |
142 |
Q |
| |
|
||||||||||||||||| | || ||||| ||||||||||| |||||||| || |||||| || ||| ||||| |||||||||||||||||||| || | |
|
|
| T |
13284471 |
tggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggaggggactcctattttcgcttcgtttcaggctggtacaagaggttgc |
13284570 |
T |
|
| Q |
143 |
tgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgagga |
242 |
Q |
| |
|
||||||| | |||| || |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
13284571 |
tgcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgggttgagacgcaactatcgaggaattcatcctgctgagga |
13284670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 28699 - 28605
Alignment:
| Q |
43 |
tggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagag |
137 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||| ||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
28699 |
tggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccattttcgcttcgtttcaggctggtacaagag |
28605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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