View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12579_low_47 (Length: 252)
Name: NF12579_low_47
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_47 |
 | |
|
| [»] chr6 (29 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] chr3 (1 HSPs) |
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|
| [»] scaffold0475 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 4571546 - 4571307
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571546 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcaggacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
4571447 |
T |
|
| Q |
113 |
gcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatt |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571446 |
gcaactctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatt |
4571347 |
T |
|
| Q |
213 |
gtgggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571346 |
gctggttggtgctcgcaagagaaagtattgaaccatcctt |
4571307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 4557697 - 4557460
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4557697 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacggcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
4557598 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
4557597 |
aaccctttttgtggatcattaggcccgatcttgtcatcggtggctcagttgttttgtcatcggagtttgtcaatgaaatttcagatagaggcctaatcgc |
4557498 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||| |||||| |||||||| ||||||| |||||||||| |
|
|
| T |
4557497 |
gggctggtgcccgcaagagcaagtattaaaccatcctt |
4557460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 4580004 - 4579767
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4580004 |
aaggaacctaggtctgttgtttatgtgaattttgggagcttgacagttatgactgcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
4579905 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579904 |
aaccctttttgtggatcattaggcccgatcttgtcatcggcggctcagctgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaataac |
4579805 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| | ||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
4579804 |
gagctggtgtccgcaagagcaagtactgaaccaccctt |
4579767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 4613278 - 4613515
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
4613278 |
aaggaaccgaagtccgttgtttatgtgaattttgggagcatgaccgttatgactgcagaaaaactattagagtttgcttggggtttggcgaatagcaagc |
4613377 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4613378 |
aaccctttttgtggatcattaggcctgatcttgtcattggcggctcagttgttttgtcatcagagtttgtgaatgaaatttcagatagaggcctaatcgc |
4613477 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| | ||||| | |||||| ||||||| ||||| |||| |
|
|
| T |
4613478 |
gagctggtgtcctcaagagcaagtattaaaccaccctt |
4613515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 4586210 - 4585971
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
4586210 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcacaacagttatgactacagaaaaactattagagtttgcttggggtttggccaatagcaa |
4586111 |
T |
|
| Q |
113 |
gcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatt |
212 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||||||||||||||| || | ||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
4586110 |
gcaacattttttatggatcattagacctgatcttgtcattggtggttccttggttttgtcatctgagtttaagaatgaaatttcagatagaggcctaatc |
4586011 |
T |
|
| Q |
213 |
gtgggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| |||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
4586010 |
gcgggttggtgcccgcaagagcaagtattgaaccaccctt |
4585971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 4598740 - 4598506
Alignment:
| Q |
18 |
gaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaac |
117 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| || || |||||| ||||||| ||||||| ||||| |||||||| || ||||||||| ||| |
|
|
| T |
4598740 |
gaaccaaggtctgttgtttatgtgaattttgggagcataacggtgatgactgcagaaaagttgttagactttgcttggggtttggccaatagcaagaaac |
4598641 |
T |
|
| Q |
118 |
cctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtggg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
|
|
| T |
4598640 |
cctttttgtggatcattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcttagttgcaag |
4598541 |
T |
|
| Q |
218 |
ttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||| |
|
|
| T |
4598540 |
ctggtgtctgcaagagcaagtattaaaccatcctt |
4598506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 3172298 - 3172076
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||||| || ||| ||| | ||||||||||| ||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
3172298 |
gttgtttatgtaaattttggcagcatcatagttatgtctcaagagaaattattagagtttgcttggggtttagccaacagcaagaaaccctttttgtgga |
3172199 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
3172198 |
ttattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatagcaagttggtgtccgca |
3172099 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
3172098 |
agagaaagtgttgaaccatcctt |
3172076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 4564271 - 4564046
Alignment:
| Q |
27 |
tccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| || || ||||||| || ||||| ||||| || || ||| |||| |||||||||||| |
|
|
| T |
4564271 |
tccgttgtttatgtgaattttggaagcattacagttatgacaccaaaacaactgttggaatttgcttgggggttggccaattgcaataaaccctttttgt |
4564172 |
T |
|
| Q |
127 |
ggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctc |
226 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
4564171 |
ggatcattaggcctgaccttgtcattggtggctcagtcgttttgtcatctgagtttgtgaatgaaatttcagatagaggcttaattgcaagttggtgtcc |
4564072 |
T |
|
| Q |
227 |
gcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
|| ||||||||||||||||| |||| |
|
|
| T |
4564071 |
acaggagaaagtattgaaccaccctt |
4564046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 4626523 - 4626286
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
|||||||| | ||| |||||||||||||| ||||| ||| | | |||||||||| || | ||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
4626523 |
aaggaaccaaagtctgttgtttatgtgaactttggcagcgttatagttatgactccacagaaactgttagagtttgcttggggtttggctgatagcaaga |
4626424 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| || ||| |||||| ||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
4626423 |
aaccctttttgtggatcattaggcctgatcttgtgattggtggctcatttatttcgtcatccgagtttgagaatgaaatttcagatagaggcctaatcgc |
4626324 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
4626323 |
aagctggtgtccgcaagagaaagtactgaaccatcctt |
4626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 4470360 - 4470138
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||| ||||| ||||| || ||| | ||||||||| || |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4470360 |
gttgtctatgtaaatttcggcagcgtcacagttatgtctccagagaaactgttagagtttgcttggggtttggcaaatagcaagcaaccctttttgtgga |
4470261 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||| ||||| ||| |||| |||| ||||||||||||||||||||| ||| ||||| | || |
|
|
| T |
4470260 |
tcattaggcccgatcttgtcattggcggctcggtagttttctcatcagagattgtaaatggaatttcagatagaggcctaatcgtgaactggtgtcctca |
4470161 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
|||| ||||| ||||||| |||| |
|
|
| T |
4470160 |
agagcaagtactgaaccaccctt |
4470138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 4592791 - 4592566
Alignment:
| Q |
27 |
tccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgt |
126 |
Q |
| |
|
|||||||||||||||||||| || ||| | |||||||||| | ||| ||| ||||||||||||| |||||||| || ||| |||| |||| ||||||| |
|
|
| T |
4592791 |
tccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccttttttgt |
4592692 |
T |
|
| Q |
127 |
ggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctc |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| | |
|
|
| T |
4592691 |
ggatcattaggcctgatcttgtcattggtggcacaattgttttgtcatcggagtttgtgaatgaaatttcagatagaggcgtaatcgcgagctggtgtcc |
4592592 |
T |
|
| Q |
227 |
gcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
|||||| ||||||| ||||| |||| |
|
|
| T |
4592591 |
tcaagagcaagtattaaaccaccctt |
4592566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 4461680 - 4461458
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||||||||| | || |||||||||||||||| |||||||| || |||||||| |||||||||| |||| |
|
|
| T |
4461680 |
gttgtctatgtaaattttggcagcatcacagttatgactcctgatcaactgttagagtttgcttggggtttggctgatagcaagaaaccctttttatgga |
4461581 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||| | | ||||| |||| |
|
|
| T |
4461580 |
tcattaggcctgatcttgtcattggcggctcgtttattttgtcatctgagtttgtgaatgaaatttcagatagaggcctaatagcaagctggtgtccgca |
4461481 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
|||| ||||| ||||||| |||| |
|
|
| T |
4461480 |
agagcaagtactgaaccaccctt |
4461458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 4514696 - 4514918
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||| || | || ||| ||||||||||||| |||||||| || ||||||||| || ||||||| |||| |
|
|
| T |
4514696 |
gttgtttatgttaattttggtagcatcacgattatgtctccggagaaattgttagagtttgcttggggtttggccaatagcaagaaaacctttttatgga |
4514795 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||||| | ||||||| | || |
|
|
| T |
4514796 |
tcattaggcctgatcttgtcattggtggctcagtggttttgtcgtctgagtttgtgaatgaaattgcagatagaggcctaatagcaagttggtgtccaca |
4514895 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
4514896 |
agagaaagttttgaaccaccctt |
4514918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 4506414 - 4506236
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||| || | || ||| | ||||||||||| |||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
4506414 |
gttgtttatgtgaattttggaagcatcacaattatgtctccggagaaatttttagagtttgcttggggtttggccaatagcaagaaaccctttttgtgga |
4506315 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcct |
208 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| || ||||||| |||||||||||||||||| |||| |
|
|
| T |
4506314 |
tcattaggcctgatcttgtaattggtggctcagtggttttgtcttcagagtttgcaaatgaaatttcagatagaagcct |
4506236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 4516875 - 4516656
Alignment:
| Q |
33 |
gtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatca |
132 |
Q |
| |
|
||||||||||||||||| ||||| || || |||||| |||| ||||||||||||| || |||||||| || || |||||| |||| ||||||||||| | |
|
|
| T |
4516875 |
gtttatgtgaattttggaagcatcacggtcatgactccagatcaactgttagagttcgcttggggtttggccaacagcaagaaaccttttttgtggatta |
4516776 |
T |
|
| Q |
133 |
ttaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgcaaga |
232 |
Q |
| |
|
||||||| || ||||||||||||||||| ||| |||||||||| || ||||||||||||| ||| ||||||||| |||| | | ||||| ||||||| |
|
|
| T |
4516775 |
ttaggcctgaccttgtcattggtggctcggttattttgtcatccgattttgtgaatgaaacttcggatagaggcgtaatagcaagctggtgtccgcaaga |
4516676 |
T |
|
| Q |
233 |
gaaagtattgaaccatcctt |
252 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
4516675 |
gaaagtgttgaaccatcctt |
4516656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 4574882 - 4574648
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||| ||||| || || ||||||||||| |||||||| ||||| || |||||| || ||| || || |||||||||| |||||||| || || ||||| |
|
|
| T |
4574882 |
caaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaagctcgtagagtttgcttggggtttggccaacagcaa |
4574783 |
T |
|
| Q |
113 |
gcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatt |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| || ||| |||| ||||||||||||||||| ||||| |
|
|
| T |
4574782 |
aaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctgattttttgaaagaaatttcagatagaggactaata |
4574683 |
T |
|
| Q |
213 |
gtgggttggtgctcgcaagagaaagtattgaacca |
247 |
Q |
| |
|
| ||||||| | |||||||||||||||||||| |
|
|
| T |
4574682 |
gcaagttggtgtccacaagagaaagtattgaacca |
4574648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 4259729 - 4259946
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||| |||| || | ||||||||||| ||||| || || ||||||||| ||||||||||||||| |
|
|
| T |
4259729 |
gttgtttacgtgaattttggcagcattacagttatgactccagatcaatttttagagtttgcttggggattggccaatagcaagaaaccctttttgtgga |
4259828 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| || || | ||||||||||| || |||||||||| ||||||| || ||||||||| |||||||||||||| | | | ||||| |||| |
|
|
| T |
4259829 |
tcattaggcctgacctcattattggtggctcctttattttgtcatctgagtttgagagtgaaatttcggatagaggcctaatcgcgagctggtgtccgca |
4259928 |
T |
|
| Q |
230 |
agagaaagtattgaacca |
247 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
4259929 |
agagcaagtactgaacca |
4259946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 4299396 - 4299576
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||| |||| ||||||||||| |||| |||||||| || ||| ||| | |||| |||||||||| |
|
|
| T |
4299396 |
gttgtttatgtgaattttggcagcgttacagttatgactccagagcaactgttagagattgcttggggtttggccaattgcaggaaaccatttttgtgga |
4299495 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaa |
210 |
Q |
| |
|
|||||||||| || ||||||||||| |||| || |||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4299496 |
tcattaggccagaccttgtcattggcggcttgtttattttgtcatctgagtttgagaatgaaatttcaaatagaggcctaa |
4299576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 4622698 - 4622518
Alignment:
| Q |
31 |
ttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggat |
130 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||||| ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
4622698 |
ttgtttacgtgaattttggcagcattacagtgatgactcgagatcaactattagagtttgcttggggtttggctgatagcaagaaaccctttttgtggat |
4622599 |
T |
|
| Q |
131 |
cattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaat |
211 |
Q |
| |
|
||||||||| || |||||||| || ||||| || |||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4622598 |
cattaggcctgaccttgtcatgggcggctcgtttattttgtcatctgagtttgagaatgaaatttcaggtagaggcctaat |
4622518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 4503972 - 4504147
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||| ||| ||| ||| ||||||||||||| |||||||| || ||||||||| |||| |||||||||| |
|
|
| T |
4503972 |
gttgtttatgtaaattttggcagcattacagttatgtcttaagataaattgttagagtttgcttggggtttggccaatagcaagaaaccttttttgtgga |
4504071 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagagg |
205 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||| || |||||||| || ||||||||||||| ||| ||||||| |
|
|
| T |
4504072 |
ttattaggcctgatcttgttattggtggctcagaggtgttgtcatctgattttgtgaatgaaacttctaatagagg |
4504147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 4489930 - 4490144
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||| || ||| || || |||||||||||||||||||| || || |||||| ||||||||||||||| |
|
|
| T |
4489930 |
gttgtttatgtaaattttggcagcatcactgttatgtctcgagagaagctattagagtttgcatggggtttggccaacagcaagaaaccctttttgtgga |
4490029 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| || |||||||| || ||| |||| ||||||||||||||||| ||||| | ||||||| | || |
|
|
| T |
4490030 |
tcattaggcctgatcttgttattggtggctcacaggtgttgtcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgtccaca |
4490129 |
T |
|
| Q |
230 |
agagaaagtattgaa |
244 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4490130 |
agagaaggtattgaa |
4490144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 4602349 - 4602124
Alignment:
| Q |
27 |
tccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| | | || | ||||| || || |||||||| || ||| || | |||| ||||||| |
|
|
| T |
4602349 |
tccgttgtttatgtgaattttggcagcattacagttatgacaccccatcaattattagaattcgcttggggtttggccaattgccataaaccatttttgt |
4602250 |
T |
|
| Q |
127 |
ggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctc |
226 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
4602249 |
ggatcattaggcctgatcttgtcattggtggctcagtgattttgtcatctgagtttacaaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
4602150 |
T |
|
| Q |
227 |
gcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
4602149 |
acaagagaaagtgttgaaccaccctt |
4602124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 4266724 - 4266963
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||| ||||| || || ||||||||||| |||||||| ||||| ||||||||| | ||| || || ||||||||||| |||||||| || || ||||| |
|
|
| T |
4266724 |
caaaagaaccaagatctgttgtttatgtaaattttggtagcatcacagttatgtcacgagagaagctcttagagtttgcttggggtttggccaacagcaa |
4266823 |
T |
|
| Q |
113 |
gcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatt |
212 |
Q |
| |
|
| | || ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||| | || ||||||||||||||||| ||||| |
|
|
| T |
4266824 |
gaacccttttttgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgatttttttaaagaaatttcagatagaggactaata |
4266923 |
T |
|
| Q |
213 |
gtgggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| ||||||| | ||||| ||||| |||||||| |||| |
|
|
| T |
4266924 |
gcaagttggtgtccacaagataaagtgttgaaccaccctt |
4266963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 4481250 - 4481028
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| ||||| || ||| ||||| ||||||||||| |||||||| || |||||||| || ||||||||||| |
|
|
| T |
4481250 |
gttgtttatgtaaattttggcagcatcacaattatgtctcaagagaaactcttagagtttgcttggggttttgccaatagcaaaaaaaactttttgtgga |
4481151 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
| |||||| | |||||||||||||||||||||| || |||||||| |||| | |||| ||||||||| ||||||||||||| | ||||||| | || |
|
|
| T |
4481150 |
ttattaggtctaatcttgtcattggtggctcagtggtgttgtcatctgagtatttgaaagaaatttcaaatagaggcctaatagcaagttggtgtccaca |
4481051 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
4481050 |
agagaaagttttgaaccaccctt |
4481028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 4256199 - 4256351
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||| ||||| || || ||||||||| |||| |||||||| | |
|
|
| T |
4256199 |
gttgtttacgtgaattttggcagcattacagttatgactccagatcaactgttagagtttgcttggggattggccaatagcaagaaaccatttttgtgta |
4256298 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagttt |
182 |
Q |
| |
|
|||||||||| || || |||||||||||||| || |||||||||| |||||| |
|
|
| T |
4256299 |
tcattaggcctgacctcgtcattggtggctcctttattttgtcatctgagttt |
4256351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 4458169 - 4457929
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||| ||||| | ||| ||| ||||||| |||||||| ||||| ||||||||| || ||| || || ||||| ||||| |||| ||| || || ||||| |
|
|
| T |
4458169 |
caaaagaaccaaagtctgttatttatgtaaattttggaagcatcacagttatgtctcaagagaagctcttagaatttgcttgggttttggccaacagcaa |
4458070 |
T |
|
| Q |
113 |
gcaacccttttt-gtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaat |
211 |
Q |
| |
|
| || ||||||| |||||| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
4458069 |
gaaaaccttttttgtggataactaggcctgatcttgtcattggtggctcggttgttttgtcatcggattttgtgaatgaaacttctgatagaggcttaat |
4457970 |
T |
|
| Q |
212 |
tgtgggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| ||||||| | ||||| ||||| |||||||| |||| |
|
|
| T |
4457969 |
agcaagttggtgtccacaagataaagtgttgaaccaccctt |
4457929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 247
Target Start/End: Complemental strand, 4561011 - 4560846
Alignment:
| Q |
81 |
ttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagt |
180 |
Q |
| |
|
||||||||||| |||||||| || || |||||| |||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||| || | |
|
|
| T |
4561011 |
ttagagtttgcttggggtttggccaacagcaagaaaccatttttatggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctga-t |
4560913 |
T |
|
| Q |
181 |
ttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgcaagagaaagtattgaacca |
247 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||| | ||||||| | |||||||||||||||||||| |
|
|
| T |
4560912 |
ttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaacca |
4560846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 4617579 - 4617357
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| | || || | | || ||||| |||||||| || ||| ||||| || | |||||||||| |
|
|
| T |
4617579 |
gttgtttatgtgaatttcggcagcattacagttatgacacccgagcaattactggaatttgcttggggtttggccaattgcaagaaatcatttttgtgga |
4617480 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||| ||||| |||||| ||||||||| |||||||||||||||| | ||||||| | || |
|
|
| T |
4617479 |
tcataaggcctgatcttgtcattggtggctcagtgattttctcatctgagtttacaaatgaaattgcagatagaggcctaatagcaagttggtgtccaca |
4617380 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||| ||||| |||||||| |||| |
|
|
| T |
4617379 |
agacaaagtgttgaaccaccctt |
4617357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 4568607 - 4568391
Alignment:
| Q |
33 |
gtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatca |
132 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| |||| | ||||||||| | || ||||| || || |||||| |||| ||||||||||||| |
|
|
| T |
4568607 |
gtttatgtgaattttggaagcactatggttatgactccagagca---gttagagttctcttgaggttttgccaacagcaagaaaccttttttgtggatca |
4568511 |
T |
|
| Q |
133 |
ttaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgcaaga |
232 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||| || ||| |||||||||| ||| | | ||||| ||||||| |
|
|
| T |
4568510 |
ttaggccttagcttgtcattggtggctcagttattttgtcatccgagtttgtgaatggaacttcggatagaggccaaatagcaagctggtgtccgcaaga |
4568411 |
T |
|
| Q |
233 |
gaaagtattgaaccatcctt |
252 |
Q |
| |
|
| |||| |||||||| |||| |
|
|
| T |
4568410 |
gcaagtgttgaaccaccctt |
4568391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 16685827 - 16686064
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | |||||||||| |
|
|
| T |
16685827 |
aaggaaccgagttccgttgtttatgtgaattttgggagcatgacagttatgactgcagaaaaactattagagtttgcttggggtttgaccaatagcaagc |
16685926 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
||| ||| |||||||||||| | |||||||||||| | || || || ||||||||||| |||||| ||||||||| ||||||||| ||||||| | |
|
|
| T |
16685927 |
aacattttcaatggatcattaggtctgatcttgtcatttgcggttccgtggttttgtcatctgagtttaagaatgaaatctcagatagaagcctaatcgc |
16686026 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
| | |||||| |||||||| ||||||| |||||||||| |
|
|
| T |
16686027 |
gagctggtgcccgcaagagcaagtattaaaccatcctt |
16686064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 20863459 - 20863640
Alignment:
| Q |
71 |
agaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttg |
170 |
Q |
| |
|
||||||| |||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
20863459 |
agaaaaattgttagagtttgcatggggtttggccaacagcaagaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggtgattttt |
20863558 |
T |
|
| Q |
171 |
tcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||| | | ||||||| | |||||||| || ||||||||||||| |
|
|
| T |
20863559 |
tcatctgcgtttgtgaatgaaatttcagatagaggcctaatcgcgagttggtgtccacaagagaaggtgttgaaccatcctt |
20863640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 1674783 - 1674602
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| |||| |||| || |||||||| |||||||| || || ||||| |||| |||||||||| |
|
|
| T |
1674783 |
gttgtttatgtgaatttcggtagcattattgttatgactccagatcaactattggagtttgcttggggtttggccgattgcaagaaaccttttttgtgga |
1674684 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaat |
211 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1674683 |
tcactaggcctgatcttgtcattggtggctcagtggttttgtcatctgagtttatgaaagaaatttcagatagaggcctaat |
1674602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 4261 - 4483
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||| |||| ||| | ||| | ||| || |||||||||||| |
|
|
| T |
4261 |
gttgtttatgtgaattttggaagcattacagttatgactccagatcaactgttagagtttgcttgggttttgaccaattgtaagaaatcctttttgtgga |
4360 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||| | | ||||| | || |
|
|
| T |
4361 |
tcattaggcctgaccttgtcattggcggctcgtttattttgtcatctgagtttgagaatgaaatttcagatagaggcctaattgcgagctggtgtccaca |
4460 |
T |
|
| Q |
230 |
agagaaagtattgaaccatcctt |
252 |
Q |
| |
|
|||| ||||| ||||||| |||| |
|
|
| T |
4461 |
agagcaagtactgaaccaccctt |
4483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 3294 - 3475
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||| || | |||||||||| ||||| |||||||| || |||||||| |||| |||||||||| |
|
|
| T |
3294 |
gttgtttatgtgaatttcggcagcattacagttatgactccaaatcaactgttagaatttgcttggggtttggccgatagcaagaaaccgtttttgtgga |
3393 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaat |
211 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || |||||||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
3394 |
tcattaggcctgatcttgtcattggcggctcgtttattttgtcatcagaatttgagaatgaaatttcagatagaggcctaat |
3475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 1281686 - 1281449
Alignment:
| Q |
15 |
aaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagc |
114 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || ||||| |||||||||||| |||| |||| || ||||| |||||| | || ||||||||| |
|
|
| T |
1281686 |
aaggaaccgagatctgttgtttatgtgaatttcggaagcattacagttatgactccagagcaacttcaggaatttgcttggggtctggctaatagcaaga |
1281587 |
T |
|
| Q |
115 |
aaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgt |
214 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||| |||||||| |||||||||| || |||| ||||||||||||||||||||||||||| | |
|
|
| T |
1281586 |
aaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagc |
1281487 |
T |
|
| Q |
215 |
gggttggtgctcgcaagagaaagtattgaaccatcctt |
252 |
Q |
| |
|
||||||| | ||||||||||| |||||||| |||| |
|
|
| T |
1281486 |
aagttggtgtccacaagagaaagtgttgaaccaccctt |
1281449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 3086977 - 3086763
Alignment:
| Q |
30 |
gttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
129 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||| ||| |||| ||||||||||| |||||||| || ||||||||| |||| |||||||||| |
|
|
| T |
3086977 |
gttgtttatgtgagttttggcagcattacagttatgactcaagagcaactattagagtttgcttggggtttggccaatagcaagaaaccatttttgtgga |
3086878 |
T |
|
| Q |
130 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgtgggttggtgctcgca |
229 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || || ||||||| ||||||| ||| ||||||||||||||||| ||||| | | ||||| |||| |
|
|
| T |
3086877 |
tcattaggcctgatcttgtcattggcggctcctttattatgtcatctgagtttgagaaagaaatttcagatagaggtctaatcgcaagctggtgtccgca |
3086778 |
T |
|
| Q |
230 |
agagaaagtattgaa |
244 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
3086777 |
agagcaagtattgaa |
3086763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 24103573 - 24103375
Alignment:
| Q |
13 |
caaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaa |
112 |
Q |
| |
|
|||| ||||| || || ||||||||||| |||||||| ||||| ||||||||| | ||| || || ||||||||||| |||||||| || |||||||| |
|
|
| T |
24103573 |
caaaagaaccaagatcagttgtttatgtaaattttggtagcatcacagttatgtcacgagagaagctcttagagtttgcttggggtttggccaatagcaa |
24103474 |
T |
|
| Q |
113 |
gcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaat |
211 |
Q |
| |
|
| | || ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||| | || ||| ||||||||||||| ||||| |
|
|
| T |
24103473 |
gaacccttttttgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgatttttttaaagaagtttcagatagaggactaat |
24103375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 27999753 - 27999855
Alignment:
| Q |
109 |
gcaagcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcct |
208 |
Q |
| |
|
||||| |||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
27999753 |
gcaagaaaccttttttgtggatcactaggcctaatcttgtcattggtggctcagtggttttgtcatctgagtttaggaaagaaatttcagatagaggcct |
27999852 |
T |
|
| Q |
209 |
aat |
211 |
Q |
| |
|
||| |
|
|
| T |
27999853 |
aat |
27999855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 3162 - 3261
Alignment:
| Q |
108 |
agcaagcaaccctttttgtggatcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcc |
207 |
Q |
| |
|
|||||| |||||||| |||||||||||||| | || ||||||||||| || ||| || ||||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
3162 |
agcaagaaaccctttgtgtggatcattaggtctgaccttgtcattggcggatcatgtgctttgttatatgagtttgagaatgaaacttcagatagaggcc |
3261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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