View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_48 (Length: 249)
Name: NF12579_low_48
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4999463 - 4999223
Alignment:
| Q |
1 |
tccattgcttcagcataagtcaatttctgaggtgaatccaacttcaatgctttcaatttattatatgataaaaatgcaatgcaatttgagaggggcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
4999463 |
tccattgcttcagcataagtcaatttctgaggtgaatccagcttcaatgctttcaatttattatatgataaaaatgcaatggaatttgacaggggcaact |
4999364 |
T |
|
| Q |
101 |
ctgagcaaggggtttaacagaggattagggacattctcagctggaggacttgctgttggaatgggagagttatcaggattggctggagaatgggaagaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4999363 |
ctgagcaaggggtttaacagagtattagggacattctcagctggaagacttgctgttggaatgggagagttatcagcattggctggagaatgggaagaaa |
4999264 |
T |
|
| Q |
201 |
ttatagttattagtagtacattcattgttggattctctgct |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
4999263 |
ttatagttattagtagtacattcattgttggattctgtgct |
4999223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 31807235 - 31807294
Alignment:
| Q |
95 |
gcaactctgagcaaggggtttaacagaggattagggacattctcagctggaggacttgct |
154 |
Q |
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|||||||| ||||| || | ||||||||||||||||| || |||||||||||||||||| |
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| T |
31807235 |
gcaactcttagcaaaggtctaaacagaggattagggactttatcagctggaggacttgct |
31807294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34804272 - 34804032
Alignment:
| Q |
1 |
tccattgcttcagcataagtcaatttctgaggtgaatccaacttcaatgctttcaatttattatatgataaaaatgcaatgcaatttgagaggggcaact |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34804272 |
tccattgcttcaacataagtcaatttctgaggtgaatccagcttcaatgctttcaatttattatatgataaaaatgcaatggaatttgacaggggcaact |
34804173 |
T |
|
| Q |
101 |
ctgagcaaggggtttaacagaggattagggacattctcagctggaggacttgctgttggaatgggagagttatcaggattggctggagaatgggaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
34804172 |
ctgagcaaggggtttaacagaggattagggacattctcagctggaggacttgctgttggaatgggagagttatcagcattggctgaagaatgggaagaaa |
34804073 |
T |
|
| Q |
201 |
ttatagttattagtagtacattcattgttggattctctgct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
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| T |
34804072 |
ttatagttattagtagtacattcattgttggattctgtgct |
34804032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34804407 - 34804378
Alignment:
| Q |
1 |
tccattgcttcagcataagtcaatttctga |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
34804407 |
tccattgcttcagcataagtcaatttctga |
34804378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 43830837 - 43830638
Alignment:
| Q |
42 |
cttcaatgctttcaatttattatatgataaaaatgcaatgcaatttgagaggggcaactctgagcaaggggtttaacagaggattagggacattctcagc |
141 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43830837 |
cttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggggcaactctgagcaaggggtttaacagaggattagggacattgtcagc |
43830738 |
T |
|
| Q |
142 |
tggaggacttgctgttggaatgggagagttatcaggattggctggagaatgggaagaaattatagttattagtagtacattcattgttggattctctgct |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
43830737 |
tggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggattctgtgct |
43830638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 43816614 - 43816422
Alignment:
| Q |
42 |
cttcaatgctttcaatttattatatgataaaaatgcaatgcaatttgagaggggcaactctgagcaaggggtttaacagaggattagggacattctcagc |
141 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43816614 |
cttcaacgttttcaatttattttatgataaaaatgcaatggaatttggcaggggcaactctgagcaaggggtttaacagaggattagggacattctcagc |
43816515 |
T |
|
| Q |
142 |
tggaggacttgctgttggaatgggagagttatcaggattggctggagaatgggaagaaattatagttattagtagtacattcattgttggatt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
43816514 |
tggaggacttgctgttggaatgggagagttatcagcattggcaggagaatgggaagaagttatagttataatcagtacattcattgttggatt |
43816422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 43823578 - 43823385
Alignment:
| Q |
40 |
aacttcaatgctttcaatttattatatgataaaaatgcaatgcaatttgagaggggcaactctgagcaaggggtttaacagaggattagggacattctca |
139 |
Q |
| |
|
|||||| | |||||||||||||| | |||| ||||||||||| ||||| ||| |||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
43823578 |
aacttctaagctttcaatttatt-tctgatcaaaatgcaatgaaattttgcaggagcaactctgaacagagggtttaacagaggattagggacattgtca |
43823480 |
T |
|
| Q |
140 |
gctggaggacttgctgttggaatgggagagttatcaggattggctggagaatgggaagaaattatagttattagtagtacattcattgttggatt |
234 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
43823479 |
gccggaggacttgctgtaggaatgggagagttatcagcattggctggagaatgggaagaagttatagtgattatcagtacattcattgttggatt |
43823385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2233483 - 2233427
Alignment:
| Q |
1 |
tccattgcttcagcataagtcaatttctgaggtgaatccaacttcaatgctttcaat |
57 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
2233483 |
tccattgctccagcataagtcaatttatgaggtgaatccagcttcaatactttcaat |
2233427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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