View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_50 (Length: 248)

Name: NF12579_low_50
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_50
NF12579_low_50
[»] chr6 (2 HSPs)
chr6 (1-93)||(3215996-3216088)
chr6 (179-237)||(3215852-3215910)
[»] chr7 (1 HSPs)
chr7 (179-237)||(2032976-2033034)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3216088 - 3215996
Alignment:
Q  1 acttaaatttctttttggtcctgccctaatggctgctgcctccattgtgattggattaagagatacaatgctcaaagtggcaattgttcaagt 93  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3216088 acttaaatttctttttggtcctgccctaatggctgttgcctccattgtgattggattaagagatacaatgctcaaagtggcaattgttcaagt 3215996  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 3215910 - 3215852
Alignment:
Q  179 ggcagctctaccccaaggaattgttccttttgtttttgcaagagagtatgatgtccatc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3215910 ggcagctctaccccaaggaattgttccttttgtttttgcaagagagtataatgtccatc 3215852  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 2033034 - 2032976
Alignment:
Q  179 ggcagctctaccccaaggaattgttccttttgtttttgcaagagagtatgatgtccatc 237  Q
    |||||||||||| |||||||||||||||||||||||||| | ||| ||| |||||||||    
T  2033034 ggcagctctaccacaaggaattgttccttttgtttttgctaaagaatataatgtccatc 2032976  T

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