View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_53 (Length: 239)
Name: NF12579_low_53
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_53 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 32547753 - 32547980
Alignment:
| Q |
12 |
acatcatgaaaattaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatga |
111 |
Q |
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| T |
32547753 |
acatcatgaaaattaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatga |
32547852 |
T |
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| Q |
112 |
ataggagtctgaagctgtaatcttgtcttcactagccaaacaggatttgtgaacaaggaaacctgaaaataggtgaaggaaattaaaatgattgcaggtt |
211 |
Q |
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| T |
32547853 |
ataggagtctgaagctgtaatcttgtcttcactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggtt |
32547952 |
T |
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| Q |
212 |
catatcttgacaccatccaggaatgtac |
239 |
Q |
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| T |
32547953 |
catatcttgacaccattcaggaatgtac |
32547980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 32520619 - 32520752
Alignment:
| Q |
12 |
acatcatgaaaattaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatga |
111 |
Q |
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| T |
32520619 |
acatgatgaaagttaacccaaaagtgaacagttcagaatatatagttaatttaagatggagagcagaccatatatcccagagtatggccgtgcctgatga |
32520718 |
T |
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| Q |
112 |
ataggagtctgaagctgtaatcttgtcttcacta |
145 |
Q |
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| T |
32520719 |
agcggtgtctgaagctgcaatcttgtcttcacta |
32520752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 32532325 - 32532489
Alignment:
| Q |
41 |
agttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtctt |
140 |
Q |
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| T |
32532325 |
agttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgatgaagaggcgtctgaagctgcaaccttgtctt |
32532424 |
T |
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| Q |
141 |
cactagccaaacaggatttgtgaacaaggaaacctgaaaataggtgaaggaaattaaaatgattg |
205 |
Q |
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| T |
32532425 |
cactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattg |
32532489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 23482548 - 23482709
Alignment:
| Q |
40 |
cagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtct |
139 |
Q |
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| T |
23482548 |
cagttcaaaatatatagccaatgtaagatggagatcagaccatatagcctagagtatggtcgtgcatgatgaagagg-gtttcaagctgcaaccttgtct |
23482646 |
T |
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| Q |
140 |
tcactagccaaacaggatttgtgaacaaggaaacctgaaaataggtgaaggaaattaaaatga |
202 |
Q |
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| T |
23482647 |
tcactacaaaaaaaggatttgtgcacaagcaaacctaacaacagctgaaggaaaccaaaatga |
23482709 |
T |
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