View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_56 (Length: 237)
Name: NF12579_low_56
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 5350992 - 5351178
Alignment:
| Q |
42 |
atctaaatatacattaattatttcaaccgtaccattcatttgcatttatatttgtataaatacccattcccttctcttccaaatcacaactcgattcaca |
141 |
Q |
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| T |
5350992 |
atctaaatatacattaattatttcaaccgtaccattcatttgcatttatatttgtataaatacccattcccttctcttccaaatcacaactcgattcaca |
5351091 |
T |
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| Q |
142 |
aatcacattacattttacatttacaacatttgccacattgattaacaagtaacatggctggagcaattaaggttgttgctatctctg |
228 |
Q |
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| T |
5351092 |
aatcacattacattttacatttacaacatttgccacattgattaacaaataacatggctggagcaattaaggttgttgctatctctg |
5351178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 5343417 - 5343504
Alignment:
| Q |
122 |
aaatcacaactcgattcacaaatcacattacattttacatttacaacatttgccacattgattaacaagtaacatggctggagcaattaaggttg |
216 |
Q |
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| T |
5343417 |
aaatcacaactcaattcacaaatcacatcacatat-------acaacatttgccacattgattcacaaaaaacatggctgggataattaaggttg |
5343504 |
T |
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