View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12579_low_60 (Length: 228)

Name: NF12579_low_60
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12579_low_60
NF12579_low_60
[»] chr3 (3 HSPs)
chr3 (20-112)||(2237581-2237673)
chr3 (27-85)||(10995159-10995217)
chr3 (184-228)||(2237465-2237509)
[»] chr1 (3 HSPs)
chr1 (20-112)||(34807435-34807527)
chr1 (32-112)||(44025253-44025333)
chr1 (184-228)||(34807319-34807363)
[»] chr6 (1 HSPs)
chr6 (36-112)||(14707443-14707519)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 2237673 - 2237581
Alignment:
Q  20 tggtatagtgacgttcttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtactaatcatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2237673 tggtatagtgacgttcttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtgctaatcatct 2237581  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 10995159 - 10995217
Alignment:
Q  27 gtgacgttcttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaa 85  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  10995159 gtgaagttcttgaagcataaggttactggtaaagtgaggcttctcatgaggcaatcgaa 10995217  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 2237509 - 2237465
Alignment:
Q  184 taaacatatccattcccaatcttatggtttacctgttgttccttc 228  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  2237509 taaacctatccattcccaatcttatggtttacctgttgttccttc 2237465  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 34807527 - 34807435
Alignment:
Q  20 tggtatagtgacgttcttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtactaatcatct 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34807527 tggtatagtaacgttcttgaagcataagtttactggtaaagtaaagcttcttatgaggcaatcgaaaacccttaagatttgtgctaatcatct 34807435  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 44025253 - 44025333
Alignment:
Q  32 gttcttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtactaatcatct 112  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||||||||| || || ||||| ||  ||||||||||    
T  44025253 gttcttgaagcataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaagatctgcgctaatcatct 44025333  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34807363 - 34807319
Alignment:
Q  184 taaacatatccattcccaatcttatggtttacctgttgttccttc 228  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  34807363 taaacctatccattcccaatcttatggtttacctgttgttccttc 34807319  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 14707519 - 14707443
Alignment:
Q  36 ttgaagcataagtttactggtaaagtgaagcttcttatgaggcaatcgaaaacccttaagatttgtactaatcatct 112  Q
    |||||||||||| ||||||| ||||| | |||| ||||||| ||||| || || |||||||| ||| ||||||||||    
T  14707519 ttgaagcataaggttactggaaaagttaggcttgttatgagacaatcaaagactcttaagatctgtgctaatcatct 14707443  T

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