View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12579_low_7 (Length: 554)
Name: NF12579_low_7
Description: NF12579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12579_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 3878923 - 3879335
Alignment:
| Q |
1 |
cttttagaattcctcaaataccaaagaatgagcagggacctcaacaatttcaacctagctccagctttaacaatatgatgccacctccagctgctcattt |
100 |
Q |
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| T |
3878923 |
cttttagaattcctcaaataccaaagaatgagcagggacctcaacaatttcaacctagctccagctttaacaatatgatgccacctccagctgctcattt |
3879022 |
T |
|
| Q |
101 |
gatttctccgagattgtacaataatgatcaccttggaaatgttgctgaacaagttgatccaattttgcttgctctcatcaatggaaatggaaatgcaaat |
200 |
Q |
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| T |
3879023 |
gatttctccgagattgtacattaatgatcaccttggaaatgttgctgaacaagttgatccaattttgcttgctctcatcaatggaaatggaaatgcaaat |
3879122 |
T |
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| Q |
201 |
aacccgaacttcttcttagggagtagttcaatgtaattgtaaagatgcatattttcaattttgaatgattatcttgtgattattgttttctcacttatgc |
300 |
Q |
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| T |
3879123 |
aacccgaacttcttcttagggagtagttcaatgtaattgtaaagatgcatattttcaattttgaatgattatcttgtgattattgttttctcacttatgc |
3879222 |
T |
|
| Q |
301 |
agatctttcaaacccacatgtgaaatagtttacaataggtccttttacctgtagtgagtctagtgacacttaactgtgctgcttcctctttcataggcat |
400 |
Q |
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| T |
3879223 |
agatctttcaaacccacatgtgaaatagtttacaataggtccttttacctgtagtgagtctagtgacacttaactgtgctgcttcctctttcataggcat |
3879322 |
T |
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| Q |
401 |
tgatttgttttag |
413 |
Q |
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| T |
3879323 |
tgatttgttttag |
3879335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 474 - 540
Target Start/End: Original strand, 3879358 - 3879424
Alignment:
| Q |
474 |
tgcacattttaatacatgaaataccctcactatttctctttacgcacttttattttgttttgtcagt |
540 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3879358 |
tgcacattttaatacatgaaataccctcactgtttctctttacgcacttttattttgttttgtcagt |
3879424 |
T |
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