View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1257_high_1 (Length: 419)

Name: NF1257_high_1
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1257_high_1
NF1257_high_1
[»] chr3 (2 HSPs)
chr3 (63-280)||(54712646-54712862)
chr3 (344-406)||(54712508-54712572)
[»] chr1 (3 HSPs)
chr1 (156-280)||(41664389-41664512)
chr1 (63-145)||(41664565-41664647)
chr1 (344-406)||(41664176-41664238)
[»] chr5 (3 HSPs)
chr5 (154-280)||(32972446-32972571)
chr5 (63-146)||(32972313-32972396)
chr5 (344-387)||(32976738-32976781)
[»] chr4 (1 HSPs)
chr4 (364-404)||(31887946-31887985)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 63 - 280
Target Start/End: Complemental strand, 54712862 - 54712646
Alignment:
Q  63 aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatactagagatttgcaatatt 162  Q
    ||||||| || ||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54712862 aactatgtgtagttaaatgattgtagatttgaatttttttatgaaaactacagattccaatttttcttataaaaattacatactagagatttgcaatatt 54712763  T
Q  163 tcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccagaggtgtga 262  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  54712762 tcattgatttttt-tggaggagaataaatgacgaagaagattgtttcatcacttttgtataatttactatagttatcaaacccattacccagaggtgtga 54712664  T
Q  263 tatgaaggaaagaggatg 280  Q
     ||||| |||||||||||    
T  54712663 catgaaagaaagaggatg 54712646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 54712572 - 54712508
Alignment:
Q  344 gtgtgaaaatactataaagtccatgccac--ataggagtggtacaattaaaagggtgtccatgtc 406  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  54712572 gtgtaaaaatactataaagtccatgccacatataggagtggtacaagaaaaagggtgtccatgtc 54712508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 41664512 - 41664389
Alignment:
Q  156 caatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccaga 255  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  41664512 caatatttcattgatttatt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacccaga 41664414  T
Q  256 ggtgtgatatgaaggaaagaggatg 280  Q
    |||||||||||||||||||||||||    
T  41664413 ggtgtgatatgaaggaaagaggatg 41664389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 41664647 - 41664565
Alignment:
Q  63 aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatac 145  Q
    |||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||    
T  41664647 aactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcatattccaatttttcttataaaaattacatac 41664565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 41664238 - 41664176
Alignment:
Q  344 gtgtgaaaatactataaagtccatgccacataggagtggtacaattaaaagggtgtccatgtc 406  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   ||| ||||||||||||    
T  41664238 gtgtgaaaatactataaagcccatgccacataggagtggtacaaaagaaatggtgtccatgtc 41664176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 280
Target Start/End: Original strand, 32972446 - 32972571
Alignment:
Q  154 tgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattaccca 253  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||    
T  32972446 tgcaatatttcattgatttctt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacaca 32972544  T
Q  254 gaggtgtgatatgaaggaaagaggatg 280  Q
    |||||||||||||||||||||||||||    
T  32972545 gaggtgtgatatgaaggaaagaggatg 32972571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 32972313 - 32972396
Alignment:
Q  63 aactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaatttttcttataaaaattacatact 146  Q
    |||||||||||||||||||||||||||||||||       ||||||||| || ||| |||||||||||||||||||||||||||    
T  32972313 aactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcagatttcaatttttcttataaaaattacatact 32972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 32976738 - 32976781
Alignment:
Q  344 gtgtgaaaatactataaagtccatgccacataggagtggtacaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32976738 gtgtgaaaatactataaagtccatgccacataggagtggtacaa 32976781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 31887985 - 31887946
Alignment:
Q  364 ccatgccacataggagtggtacaattaaaagggtgtccatg 404  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  31887985 ccatgccacatagg-gtggtacaaataaaagggtgtccatg 31887946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University