View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_high_2 (Length: 393)
Name: NF1257_high_2
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 30 - 345
Target Start/End: Original strand, 2912284 - 2912599
Alignment:
| Q |
30 |
gtaccaaactgcaatgagaacgtttcagggcatgaaagatcaaagctcaaagtgtgattcaacaatcaagtctctaagggattctacttcttcaaagcaa |
129 |
Q |
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| T |
2912284 |
gtaccaaactgcaatgagaacgtttcagggcatgaaagatcaaagctcaaagtgtgattcaacaatcaagtctctaagggattctacttcttcaaagcaa |
2912383 |
T |
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| Q |
130 |
gtcaaggctagggttttctcaaataatactgcttttgaaaattcatcttctgctttcaaaggtagcaacagtgacaaggtaaaacgtgctgaagagtctc |
229 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912384 |
gttaaggctagggttttctcaaataatactgcttttgaaaattcatcttctgctttcaaaggtagcaacagtgacaaggtaaaacgtgctgaagagtctc |
2912483 |
T |
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| Q |
230 |
ttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaattctattttgtagcttcggaatctatgta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912484 |
ttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaattctattttgtagcttcggaatctatgta |
2912583 |
T |
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| Q |
330 |
aaagctttgtaaatct |
345 |
Q |
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|||||||||||||||| |
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| T |
2912584 |
aaagctttgtaaatct |
2912599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 38025146 - 38025194
Alignment:
| Q |
223 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
271 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38025146 |
gagtctctaaggactgtcatgtacttgagctgctggggtcctaattgat |
38025194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 38031886 - 38031934
Alignment:
| Q |
223 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
271 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38031886 |
gagtctttgaggactgtcatgtacttgagctgctggggtcctaattgat |
38031934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 38003635 - 38003683
Alignment:
| Q |
223 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
271 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38003635 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
38003683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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