View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_1 (Length: 566)
Name: NF1257_low_1
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 11103649 - 11103450
Alignment:
| Q |
130 |
tacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggtacgtaacaaaatattacatttct |
229 |
Q |
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| T |
11103649 |
tacatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggt--taaaaaaaatattacatttct |
11103552 |
T |
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| Q |
230 |
atgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcac |
329 |
Q |
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| T |
11103551 |
atgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcac |
11103452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 11590066 - 11589893
Alignment:
| Q |
159 |
atatattaaaatcatacaatagcacaaatagg-ataactagattaaggtacgtaacaaaatattacatttctatgttgctctcatttgatgattttttgg |
257 |
Q |
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| T |
11590066 |
atatattaaaatcatacaatagcacaaatagggataactagattaaggt---taaaaaaatattacatttctatgttgctctcatttgatgattttttgg |
11589970 |
T |
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| Q |
258 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
334 |
Q |
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| T |
11589969 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
11589893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 419 - 543
Target Start/End: Complemental strand, 11103306 - 11103179
Alignment:
| Q |
419 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataataaaacccggaaacaatagcaccac- |
517 |
Q |
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| T |
11103306 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11103207 |
T |
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| Q |
518 |
--caaccttattatagattgagcctcat |
543 |
Q |
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| T |
11103206 |
aataaccttattatagattgagcctcat |
11103179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 419 - 542
Target Start/End: Complemental strand, 11589753 - 11589627
Alignment:
| Q |
419 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataataaaacccggaaacaatagcaccac- |
517 |
Q |
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| T |
11589753 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtgggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11589654 |
T |
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| Q |
518 |
--caaccttattatagattgagcctca |
542 |
Q |
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| T |
11589653 |
aataaccttattatagattgagcctca |
11589627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 11115436 - 11115341
Alignment:
| Q |
214 |
aaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
312 |
Q |
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| T |
11115436 |
aaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgta |
11115341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 11103425 - 11103338
Alignment:
| Q |
331 |
tgaatattattatgttaattaatcagcattaaatagttaatgaac--gcaagcatacaaaaagtgaaatgcataatattggactaaaa |
416 |
Q |
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| T |
11103425 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11103338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 11589871 - 11589784
Alignment:
| Q |
331 |
tgaatattattatgttaattaatcagcattaaatagttaatgaac--gcaagcatacaaaaagtgaaatgcataatattggactaaaa |
416 |
Q |
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| T |
11589871 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11589784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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