View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1257_low_10 (Length: 359)
Name: NF1257_low_10
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 2346965 - 2347316
Alignment:
| Q |
13 |
aatatcactaacagagggaattttatattggaaagaacatttttatacttttaaagagtcgaccacacatattccaataaaatatttctaaatttaatcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2346965 |
aatatcactaacagagggaattttatgttggaatgaacatttttatacttttaaggagtcgaccacacatattccaataaaatatttctaaatttaattc |
2347064 |
T |
|
| Q |
113 |
attggaggcacttttgtttgttatggtttctctatcaatatcaatattcaataacatatgaacttccactgatttatctgcttctgacttttgagnnnnn |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2347065 |
attggaggcacttttgtttgttatggtttctctatcaatatcaatattcaataacatatgaacttccactgatttatctgcttctgacttttgag-tttt |
2347163 |
T |
|
| Q |
213 |
nnngtttggtaaggtttctttatcaatc-aatatcaacattcaataccttc-----cacaattgtagtttcaatacatcctgacattagtgttcggtcac |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2347164 |
tttgtttggtaaggtttctttatcaatcaaatatcaacattcaataccttccacaacacaattgtagtttcaatacatccagacattagtcttcggtcac |
2347263 |
T |
|
| Q |
307 |
gaggggagtccagggaattacctatatggtgcacagagccattatacaagtga |
359 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2347264 |
gagggaagtccagggaattacctatatggtgcacagagccattatacaagtga |
2347316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 8286036 - 8286077
Alignment:
| Q |
166 |
acatatgaacttccactgatttatctgcttctgacttttgag |
207 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
8286036 |
acatatgaacttccactgatatattggcttctgacttttgag |
8286077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6710 times since January 2019
Visitors: 5992