View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1257_low_11 (Length: 326)

Name: NF1257_low_11
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1257_low_11
NF1257_low_11
[»] chr6 (9 HSPs)
chr6 (1-319)||(2621300-2621618)
chr6 (1-319)||(2589733-2590051)
chr6 (1-316)||(2674891-2675206)
chr6 (17-319)||(2435903-2436205)
chr6 (1-319)||(2571400-2571718)
chr6 (16-319)||(2449082-2449385)
chr6 (16-316)||(2643057-2643357)
chr6 (136-319)||(2598288-2598471)
chr6 (231-319)||(33788355-33788443)
[»] chr8 (1 HSPs)
chr8 (201-319)||(27731256-27731374)
[»] chr4 (1 HSPs)
chr4 (222-267)||(31440455-31440500)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2621618 - 2621300
Alignment:
Q  1 atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621618 atggggtgtcatcggtttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt 2621519  T
Q  101 ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggct 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2621518 ttccgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcgatgatgatggtggtgcgtccaacggtggct 2621419  T
Q  201 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2621418 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaaaagaatttttggcatttttatgatagctcttg 2621319  T
Q  301 caatggaaatcctttgctt 319  Q
    |||||||||||||||||||    
T  2621318 caatggaaatcctttgctt 2621300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2590051 - 2589733
Alignment:
Q  1 atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt 100  Q
    |||||||||| ||  ||| |||| |||||||||| || ||||||||||||||||| ||||  |||||||||| ||||| ||||||||| ||||||||| |    
T  2590051 atggggtgtcgtcagtttcgtccctttttgtttgttgaagacgaacaagggaggcataaattgaattgtcatcttgcacgaggctttcgtgagatcctat 2589952  T
Q  101 ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggct 200  Q
    |||    ||| |||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||| |||    
T  2589951 ttccataatcttaccattttgaacaactgcaatgatgtctgcattttggatggtagataggcggtgagcgatgatgatggtggtgcgtccaacggtagct 2589852  T
Q  201 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 300  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2589851 ttgtctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 2589752  T
Q  301 caatggaaatcctttgctt 319  Q
    |||||| ||||||||||||    
T  2589751 caatggcaatcctttgctt 2589733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 2674891 - 2675206
Alignment:
Q  1 atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt 100  Q
    |||| ||||||||  |||| || ||| | ||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||| ||    
T  2674891 atggagtgtcatcagtttgatcatttctagtttgttggagacgaacgagggaggtgtaaagagaattttcattttgcatgaggctttcgtgagatcccgt 2674990  T
Q  101 ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggct 200  Q
    |||   |||| |||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |  |||    
T  2674991 ttccatgatcttaccattttggacaactgcaatgatgtctgcattttggatggttgataagcggtgagcgatgatgatggtggtgcgtccaaccgccgct 2675090  T
Q  201 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 300  Q
    ||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| || |||||||    
T  2675091 ttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcacttgttgcttcatctagtaataaaattttaggcatttttattatggctcttg 2675190  T
Q  301 caatggaaatcctttg 316  Q
    |||||| |||||||||    
T  2675191 caatggcaatcctttg 2675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 2436205 - 2435903
Alignment:
Q  17 ttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacca 116  Q
    |||||| ||||| || || |||||| |||| ||||| | |||||  ||| |||||||||||||||||||||| ||||||||||||||   |||| |||||    
T  2436205 ttggtcatttttggtgtgttggagatgaactagggatgtgtaaatggaactgtcattttgcatgaggctttcgtgagatcctgtttccatgatcttacca 2436106  T
Q  117 ttttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttctt 216  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    |||||||||| ||||||||    
T  2436105 ttttgaacaactgcaatgatgtctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttctt 2436006  T
Q  217 ggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttg 316  Q
    ||||||||| ||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||  || ||||||||||||| |||||||||    
T  2436005 ggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttg 2435906  T
Q  317 ctt 319  Q
    |||    
T  2435905 ctt 2435903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2571400 - 2571718
Alignment:
Q  1 atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt 100  Q
    |||| ||||||||  ||||||| ||| | ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||  |    
T  2571400 atggagtgtcatcactttggtcatttctagtttgttggagacgaacaagggatgtgtaaagagaattgtcattttgcatgaggctatcgtgagatcccat 2571499  T
Q  101 ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggct 200  Q
    |||   || || |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |  |||    
T  2571500 ttccatgaccagaccattttgaacgaccgcaataatgtctgcattttggatggtagataagcggtgagcgatgatgatggtggttcgtccaactgcagct 2571599  T
Q  201 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 300  Q
    ||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  2571600 ttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttg 2571699  T
Q  301 caatggaaatcctttgctt 319  Q
    |||| | ||| ||||||||    
T  2571700 caattgcaattctttgctt 2571718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 2449385 - 2449082
Alignment:
Q  16 tttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacc 115  Q
    ||||||| ||| | ||||| || |||||||| ||||||| |||||||||  ||||||||||||| |||||||| ||||||||||||||  ||||| ||||    
T  2449385 tttggtcatttctagtttgttgaagacgaacgagggaggtgtaaagagagctgtcattttgcataaggctttcgtgagatcctgtttccacgatcttacc 2449286  T
Q  116 attttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttct 215  Q
    ||||||||| |  |||||||| |||||| ||   |||||||||||||||||||| ||||| |||||||||||| |||| |||||||| || |||||||||    
T  2449285 attttgaacgattgcaatgatatctgcagttctgatggtggataagcggtgagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttct 2449186  T
Q  216 tggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatccttt 315  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||  |||| || || ||||||||||||||||||||||    
T  2449185 tggacaactcgttcggattcaaaatctagtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatccttt 2449086  T
Q  316 gctt 319  Q
    ||||    
T  2449085 gctt 2449082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 2643057 - 2643357
Alignment:
Q  16 tttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacc 115  Q
    ||||||| ||| | ||||| ||||||||||| || |||| |||||||||||| |||| ||||  |||||||||||||| |||||||||    ||| | ||    
T  2643057 tttggtcatttctagtttgttggagacgaacgagagaggtgtaaagagaattttcatcttgcgcgaggctttcatgagttcctgtttccattatcttgcc 2643156  T
Q  116 attttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttct 215  Q
    ||||||||  || ||||||||||| |||||||| |||||||||| ||| ||||| ||||||||||| ||||||||||| | | ||||||||| ||| |||    
T  2643157 attttgaaacactgcaatgatgtcagcattttggatggtggataggcgatgagcgatgatgatggttgtgcgtccaactgcgactttgtctagagcgtct 2643256  T
Q  216 tggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatccttt 315  Q
    ||||||| || ||||||||||||||| ||||||||||| ||||| || | ||||| |||||| ||||||||||| || ||||||||||||| ||||||||    
T  2643257 tggacaattcgttcggattcagaatcaagtgcacttgtcgcttcgtccaacaataaaattttaggcatttttattatggctcttgcaatggcaatccttt 2643356  T
Q  316 g 316  Q
    |    
T  2643357 g 2643357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 2598288 - 2598471
Alignment:
Q  136 tgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattc 235  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||||||||| |||||||||||| |||| |||||||||    
T  2598288 tgtctgcattttggatggtagataatcggtgagcgatgatgatggtggtgcgtccaactgaagctttgtctagagcttcttggacgactcgttcggattc 2598387  T
Q  236 agaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgctt 319  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||    
T  2598388 agaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttgcaattgcaattctttgctt 2598471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 33788355 - 33788443
Alignment:
Q  231 gattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgctt 319  Q
    |||||||| || |||||||| ||||||||||| ||||  ||||||  |||  ||||||||||||||||||||||||  || ||||||||    
T  33788355 gattcagagtcaagtgcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgctt 33788443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 27731374 - 27731256
Alignment:
Q  201 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 300  Q
    ||||||||||||| ||| ||||| | ||| |||||   |||||||||||||||||||||||| |||||||  ||||| ||  || |||  ||||||||||    
T  27731374 ttgtctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttg 27731275  T
Q  301 caatggaaatcctttgctt 319  Q
    ||||||  | |||||||||    
T  27731274 caatggccaccctttgctt 27731256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 31440500 - 31440455
Alignment:
Q  222 actctttcggattcagaatctagtgcacttgttgcttcatctagca 267  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  31440500 actctttcggattgagaatccagtgcacttgttgcttcatcaagca 31440455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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