View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_13 (Length: 319)
Name: NF1257_low_13
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 52713760 - 52713952
Alignment:
| Q |
84 |
cagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctac |
183 |
Q |
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| T |
52713760 |
cagaaaaggacacactcagcaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctac |
52713859 |
T |
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| Q |
184 |
cattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaat |
276 |
Q |
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| T |
52713860 |
cattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaat |
52713952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 52722782 - 52722974
Alignment:
| Q |
84 |
cagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctac |
183 |
Q |
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||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | ||| ||||| |
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| T |
52722782 |
cagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctac |
52722881 |
T |
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| Q |
184 |
cattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaat |
276 |
Q |
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| T |
52722882 |
cattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaactaggaaacaagttcgaaat |
52722974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 52699486 - 52699651
Alignment:
| Q |
84 |
cagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctac |
183 |
Q |
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||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699486 |
cagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctac |
52699585 |
T |
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| Q |
184 |
cattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaa |
249 |
Q |
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||||||| || |||| ||||| |||||||||||||||| ||| |||||||||||| |||||||| |
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| T |
52699586 |
cattgctatttctatctctttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaa |
52699651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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