View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257_low_14 (Length: 317)
Name: NF1257_low_14
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 45 - 285
Target Start/End: Complemental strand, 22841885 - 22841645
Alignment:
| Q |
45 |
agaaagattgctcaacattcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaa |
144 |
Q |
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| T |
22841885 |
agaaagattgctcaacattcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaa |
22841786 |
T |
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| Q |
145 |
cttgccagcacatatgaccgatggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaaccaatattatc |
244 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22841785 |
cttgccagcacatatgaccgacggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaaccaatattatc |
22841686 |
T |
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| Q |
245 |
tttatccacccttccaccacgtattctttcatcatattctt |
285 |
Q |
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| T |
22841685 |
tttatccacccttccaccacgtattctttcatcattttctt |
22841645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 63 - 285
Target Start/End: Complemental strand, 22877406 - 22877184
Alignment:
| Q |
63 |
tcaacaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgac |
162 |
Q |
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| T |
22877406 |
tcaacaaatatgtcaaaaactgtattttatagctgtcaatcccaagtaaattgcctcgtgatttacctccaattccccgcaacttgccagcacatatgac |
22877307 |
T |
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| Q |
163 |
cgatggaacaggctgacttgaaatggcctat-gatttttccatgaagaaaaatatgaaattttgattcaaaaccaatattatctttatccacccttccac |
261 |
Q |
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| T |
22877306 |
cgatggaacaggctgacttgaaatggccaatggatttttccatgaagaaaaatatgaaattttgattcaaaaccaacagtatctttatgcatcc-tccac |
22877208 |
T |
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| Q |
262 |
cacgtattctttcatcatattctt |
285 |
Q |
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||| ||||| |||||||| ||||| |
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| T |
22877207 |
cacttattcattcatcattttctt |
22877184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 66 - 285
Target Start/End: Complemental strand, 22895163 - 22894945
Alignment:
| Q |
66 |
acaaatatgtcaaaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgaccga |
165 |
Q |
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||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
22895163 |
acaaatatgtcaaaaactgaattttatagttgtcaatcctgagtaaattgcctcgtgatttacctccatctccctgcaacttgccagcacatatgaccaa |
22895064 |
T |
|
| Q |
166 |
tggaacaggctgacttgaaatggcctatgatttttccatgaagaaaaatatgaaattttgattcaaaaccaatattatctttatccacccttccaccacg |
265 |
Q |
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|| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||||| |
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| T |
22895063 |
tgaaacaggctgactttaattggcctacgatttttccatgaagaaaaatatgaaattttgattcaaaaccaacggtatctttatgcatcc-tccaccact |
22894965 |
T |
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| Q |
266 |
tattctttcatcatattctt |
285 |
Q |
| |
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||||| |||||||| ||||| |
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| T |
22894964 |
tattcattcatcattttctt |
22894945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 22886914 - 22886820
Alignment:
| Q |
78 |
aaaactgtattttatagctgtcaatcccgagtaaattgcctcctgatttacctccatctccgggcaacttgccagcacatatgaccgatggaaca |
172 |
Q |
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|||| ||||||||||||||||||||| |||||||||| || |||||| ||||||||||| |||| |||||| ||||| |||||||||||||| |
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| T |
22886914 |
aaaattgtattttatagctgtcaatcacgagtaaattacccggtgatttgcctccatctccctgcaatttgccaacacatgtgaccgatggaaca |
22886820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 22810722 - 22810680
Alignment:
| Q |
195 |
atttttccatgaagaaaaatatgaaattttgattcaaaaccaa |
237 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
22810722 |
atttttccataaagaaaaatatgaaattttgagtcaaaaccaa |
22810680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 22890058 - 22890022
Alignment:
| Q |
228 |
tcaaaaccaatattatctttatccacccttccaccac |
264 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |
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| T |
22890058 |
tcaaaaccaacattatctttatccatccttccaccac |
22890022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 21149648 - 21149678
Alignment:
| Q |
192 |
atgatttttccatgaagaaaaatatgaaatt |
222 |
Q |
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| T |
21149648 |
atgatttttccatgaagaaaaatatgaaatt |
21149678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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